MD02G1127900.v1.1

Tetratricopeptide repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0011032
Physical Location & Seq
Reverse (-)
10362599 .. 10364559
1961 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1127900.v1.1.491

Sequence Viewer

Length: 1461 bp
ATGTTGCAGGATATGTGGAATGCTCCGCCTGGTTTCAGACCCACCAAGTCTGCTCCTTCCTCTCCGGCCAAGCCTCTCGGAGTTTCGAGGACTCGCTCTGTCGGGACGGAGTTGTTTCACGTGACTCACAAAGTCCCGGTAGGCGACAGTCCTTATGTCAGAGCCAAGAATGTTCAGCTGGTGGAGAAGGATCCGGAGAAAGCAATCCCGCTGTTTTGGGCAGCCATTAATTCTGGGGACAGAGTGGATAGTGCTTTGAAGGACATGGCGATTGTGATGAAGCAACAGAACCGGGCGGAAGAAGCTATCGAAGCCATCAAGTCGTTGAGACACCGGTGTTCGGATCAAGCCCAGGAGTCCCTTGACAACATCCTTTTGGATCTTTACAAGAGATGTGGGAGATTGGATGACCAAATAGCACTTTTGAGGCACAAGTTGTACTTGATTCAGCAAGGGATGGCTTTCAACGGAAAGCGCACGAAAACCGCCAGATCTCAGGGGAAGAAATTTCAGGTCTCTGTGGAACAAGAAGCCACTAGATTACTGGGGAACTTGGGGTGGGCTTTGATGCAGCAGAACAACTACATTGAAGCAGAAGATGCTTATCGCCGAGCACTCACAATTGCGCCGGATAACAACAAGATGTGCAACCTCGGAATCTGCCTAATGAAGCAAGGAAGAATCTCCGAGGCTAAGGAGAATCTCCGCCGCGTTAAGCCGGCAGTTGCGGATGGTCCAAGAGGGACGGATTCCCATCTCAAGGCCTATGAGAGGGCTCAGCAGATGCTCAAGGATCTCGAGTCTGAGATGATGAACAAGGGTGGAGACCGCGTCGAGCAGAGCAGACTTTTCGATGCCTTCCTGGGTTCTTCGTCGATTTGGCAGCCTCAGCCTTGCAGAGACCACCACCATACAAGCCTGCCGGCAACAGCCGAGTCTGTGAAATCTCAGCCCGATGAGTTTGCTGATGAGAATGTCAATTCTTCAAACATTTTCGCGAACCGGAAGATAGGATTTCCTCAGACTAAAAGTATTAATCAAGTCCCTCAACCAAACTCATTGAATGTGGCTGCAAAGCCTTACTTCGCAAAGTTCATTCCGGCTCCCCCAACCGCCTCTCAATTTGCTGAGACCCTTAAGAGGACAAGGTCTGGGAATGCTGCTAATTCAATGAGAGTGACCGAGGCGATTGAGATCACGAAACCTGCTGTGGATTTGGGCGTACCAGAGAACAAGACCAGAAGAAGGCTCTCTCTTGAAGAACCAGGGAATGAGTTGACAGGGTTGTTGCCCGACAACAAGGACTTCGAAGAGGCCATCATCGCCGCGGTCATTGACCCGACAAATGAGGCTGGGAACGCAATTGGAATCAGCAACAGTTCCGGGATGTTTCCGAAGAAGGTTGAGAAGAGGCTCAGGGTTTTTCAGGATATTACACTGTCTCTAAGTCCAAGGGCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TPR_1 TPR_19 TPR_2 TPR_8

Protein Analysis

487

Amino Acids

53.99

Weight (kDa)

9.29

Isoelectric Point (pI)

54.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_1 PF00515 181 - 212 3.6e-08 Tetratricopeptide repeat
TPR_2 PF07719 181 - 212 2e-07 Tetratricopeptide repeat
TPR_19 PF14559 189 - 247 1.3e-06 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51280
fragaria_vesca FvH4_1g11500 FvH4_1g11500
malus_domestica MD02G1127900.v1.1 MD15G1243100.v1.1
prunus_persica Prupe.7G171000_v2.0.a1
pyrus_communis pycom02g10000 pycom15g21420
rosa_chinensis RchiOBHm_Chr2g0099121
rosa_laevigata RLG00000016850
rosa_multiflora Rmu_sc0009113.1_g000006 Rmu_sc0012098.1_g000002 Rmu_sc0034643.1_g000001
rosa_roxburghii Rroxscaffold_2G00143420
rosa_rugosa Rorug02G0076900
rosa_samantha Rh2AG126000 Rh2BG129300 Rh2CG130300 Rh2DG130700
rosa_wichuraiana Rw2G009710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1213
AccII CGCG 4 cut(s) 711, 831, 998, 1328
AccIII TCCGGA 1 cut(s) 193
AclWI GGATC 5 cut(s) 185, 198, 351, 387, 801
AcoI YGGCCR 1 cut(s) 66
AcsI RAATTY 1 cut(s) 506
AcvI CACGTG 1 cut(s) 121
AfaI GTAC 2 cut(s) 440, 1224
AfiI CCNNNNNNNGG 5 cut(s) 340, 760, 771, 1140, 1245
AflII CTTAAG 1 cut(s) 1136
AgeI ACCGGT 1 cut(s) 333
AgsI TTSAA 7 cut(s) 259, 466, 590, 987, 1063, 1170, 1259
AjnI CCWGG 4 cut(s) 28, 351, 861, 1264
AluBI AGCT 2 cut(s) 178, 305
AluI AGCT 2 cut(s) 178, 305
Alw21I GWGCWC 1 cut(s) 616
Alw26I GTCTC 6 cut(s) 322, 520, 819, 894, 1124, 1446
AlwI GGATC 5 cut(s) 185, 198, 351, 387, 801
Ama87I CYCGRG 1 cut(s) 797
Aor13HI TCCGGA 1 cut(s) 193
AoxI GGCC 4 cut(s) 66, 762, 1314, 1455
ApeKI GCWGC 5 cut(s) 221, 571, 883, 1070, 1160
ApoI RAATTY 1 cut(s) 506
AseI ATTAAT 2 cut(s) 228, 1035
AsiGI ACCGGT 1 cut(s) 333
AspLEI GCGC 2 cut(s) 477, 628
AspS9I GGNCC 2 cut(s) 734, 1455
AsuC2I CCSGG 3 cut(s) 137, 293, 1384
AsuII TTCGAA 1 cut(s) 1308
AvaI CYCGRG 1 cut(s) 797
AvaII GGWCC 1 cut(s) 734
BamHI GGATCC 1 cut(s) 190
BanII GRGCYC 1 cut(s) 778
BbrPI CACGTG 1 cut(s) 121
Bbv12I GWGCWC 1 cut(s) 616
BbvCI CCTCAGC 1 cut(s) 888
BbvI GCAGC 5 cut(s) 233, 583, 895, 1057, 1147
BccI CCATC 5 cut(s) 323, 451, 725, 762, 1325
BcgI CGANNNNNNTGC 4 cut(s) 832, 866, 944, 978
BciT130I CCWGG 4 cut(s) 30, 353, 863, 1266
BcnI CCSGG 3 cut(s) 137, 293, 1384
BcoDI GTCTC 6 cut(s) 322, 520, 819, 894, 1124, 1446
BfaI CTAG 1 cut(s) 537
BfrI CTTAAG 1 cut(s) 1136
BfuAI ACCTGC 1 cut(s) 1213
BglII AGATCT 1 cut(s) 491
BisI GCNGC 7 cut(s) 222, 572, 709, 884, 1071, 1161, 1326
BlpI GCTNAGC 1 cut(s) 777
BlsI GCNGC 7 cut(s) 223, 573, 710, 885, 1072, 1162, 1327
Bme1390I CCNGG 7 cut(s) 30, 137, 293, 353, 863, 1266, 1384
Bme18I GGWCC 1 cut(s) 734
BmeT110I CYCGRG 1 cut(s) 797
BmgT120I GGNCC 2 cut(s) 734, 1455
BmiI GGNNCC 2 cut(s) 192, 1104
BmrFI CCNGG 7 cut(s) 30, 137, 293, 353, 863, 1266, 1384
BmrI ACTGGG 1 cut(s) 554
BmsI GCATC 4 cut(s) 558, 589, 774, 844
BmuI ACTGGG 1 cut(s) 554
Bpu10I CCTNAGC 3 cut(s) 693, 888, 1415
Bpu1102I GCTNAGC 1 cut(s) 777
Bpu14I TTCGAA 1 cut(s) 1308
BpuEI CTTGAG 2 cut(s) 743, 773
BpuMI CCSGG 3 cut(s) 137, 293, 1384
BsaAI YACGTR 1 cut(s) 121
BsaBI GATNNNNATC 3 cut(s) 603, 753, 1193
BsaI GGTCTC 4 cut(s) 520, 819, 894, 1124
BsaJI CCNNGG 8 cut(s) 351, 652, 687, 862, 1182, 1265, 1326, 1451
BsaWI WCCGGW 3 cut(s) 193, 333, 1002
BsaXI ACNNNNNCTCC 2 cut(s) 816, 846
Bsc4I CCNNNNNNNGG 5 cut(s) 340, 760, 771, 1140, 1245
Bse118I RCCGGY 3 cut(s) 333, 718, 922
Bse1I ACTGG 1 cut(s) 549
Bse8I GATNNNNATC 3 cut(s) 603, 753, 1193
BseAI TCCGGA 1 cut(s) 193
BseBI CCWGG 4 cut(s) 30, 353, 863, 1266
BseDI CCNNGG 8 cut(s) 351, 652, 687, 862, 1182, 1265, 1326, 1451
BseGI GGATG 5 cut(s) 369, 412, 462, 736, 1392
BseJI GATNNNNATC 3 cut(s) 603, 753, 1193
BseLI CCNNNNNNNGG 5 cut(s) 340, 760, 771, 1140, 1245
BseMII CTCAG 8 cut(s) 509, 791, 795, 902, 962, 1034, 1119, 1429
BseNI ACTGG 1 cut(s) 549
BseXI GCAGC 5 cut(s) 233, 583, 895, 1057, 1147
BseYI CCCAGC 1 cut(s) 1352
Bsh1236I CGCG 4 cut(s) 711, 831, 998, 1328
BshFI GGCC 4 cut(s) 68, 764, 1316, 1457
BshTI ACCGGT 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 616
BsiHKCI CYCGRG 1 cut(s) 797
BslFI GGGAC 6 cut(s) 118, 119, 251, 343, 757, 1028
BslI CCNNNNNNNGG 5 cut(s) 340, 760, 771, 1140, 1245
BsmAI GTCTC 6 cut(s) 322, 520, 819, 894, 1124, 1446
BsmFI GGGAC 6 cut(s) 118, 119, 251, 343, 757, 1028
BsmI GAATGC 2 cut(s) 25, 1162
BsnI GGCC 4 cut(s) 68, 764, 1316, 1457
Bso31I GGTCTC 4 cut(s) 520, 819, 894, 1124
BsoBI CYCGRG 1 cut(s) 797
Bsp119I TTCGAA 1 cut(s) 1308
Bsp1286I GDGCHC 2 cut(s) 616, 778
Bsp13I TCCGGA 1 cut(s) 193
Bsp143I GATC 6 cut(s) 190, 343, 379, 491, 793, 1194
Bsp1720I GCTNAGC 1 cut(s) 777
Bsp68I TCGCGA 1 cut(s) 998
BspANI GGCC 4 cut(s) 68, 764, 1316, 1457
BspCNI CTCAG 8 cut(s) 508, 790, 796, 901, 961, 1033, 1120, 1428
BspEI TCCGGA 1 cut(s) 193
BspFNI CGCG 4 cut(s) 711, 831, 998, 1328
BspLI GGNNCC 2 cut(s) 192, 1104
BspMI ACCTGC 1 cut(s) 1213
BspPI GGATC 5 cut(s) 185, 198, 351, 387, 801
BspT104I TTCGAA 1 cut(s) 1308
BspTI CTTAAG 1 cut(s) 1136
BspTNI GGTCTC 4 cut(s) 520, 819, 894, 1124
BsrFI RCCGGY 3 cut(s) 333, 718, 922
BsrI ACTGG 1 cut(s) 549
BssAI RCCGGY 3 cut(s) 333, 718, 922
BssECI CCNNGG 8 cut(s) 351, 652, 687, 862, 1182, 1265, 1326, 1451
BssMI GATC 6 cut(s) 190, 343, 379, 491, 793, 1194
BssT1I CCWWGG 1 cut(s) 1451
Bst2UI CCWGG 4 cut(s) 30, 353, 863, 1266
Bst4CI ACNGT 3 cut(s) 149, 1379, 1440
Bst6I CTCTTC 2 cut(s) 1305, 1403
BstAFI CTTAAG 1 cut(s) 1136
BstAPI GCANNNNNTGC 1 cut(s) 599
BstBAI YACGTR 1 cut(s) 121
BstBI TTCGAA 1 cut(s) 1308
BstC8I GCNNGC 3 cut(s) 720, 920, 924
BstDSI CCRYGG 1 cut(s) 1326
BstENI CCTNNNNNAGG 1 cut(s) 769
BstF5I GGATG 5 cut(s) 369, 412, 462, 736, 1392
BstFNI CGCG 4 cut(s) 711, 831, 998, 1328
BstHHI GCGC 2 cut(s) 477, 628
BstKTI GATC 6 cut(s) 193, 346, 382, 494, 796, 1197
BstMAI GTCTC 6 cut(s) 322, 520, 819, 894, 1124, 1446
BstMBI GATC 6 cut(s) 190, 343, 379, 491, 793, 1194
BstMWI GCNNNNNNNGC 6 cut(s) 302, 311, 599, 889, 1322, 1358
BstNI CCWGG 4 cut(s) 30, 353, 863, 1266
BstSCI CCNGG 7 cut(s) 28, 135, 291, 351, 861, 1264, 1382
BstUI CGCG 4 cut(s) 711, 831, 998, 1328
BstV1I GCAGC 5 cut(s) 233, 583, 895, 1057, 1147
BstX2I RGATCY 4 cut(s) 190, 379, 491, 793
BstYI RGATCY 4 cut(s) 190, 379, 491, 793
BsuRI GGCC 4 cut(s) 68, 764, 1316, 1457
BtgI CCRYGG 1 cut(s) 1326
BtgZI GCGATG 1 cut(s) 1306
BtsCI GGATG 5 cut(s) 369, 412, 462, 736, 1392
BtsIMutI CAGTG 1 cut(s) 1436
BtuMI TCGCGA 1 cut(s) 998
BveI ACCTGC 1 cut(s) 1213
Cac8I GCNNGC 3 cut(s) 720, 920, 924
CfoI GCGC 2 cut(s) 477, 628
Cfr10I RCCGGY 3 cut(s) 333, 718, 922
Cfr13I GGNCC 2 cut(s) 734, 1455
Cfr42I CCGCGG 1 cut(s) 1329
CseI GACGC 1 cut(s) 820
Csp6I GTAC 2 cut(s) 439, 1223
CspAI ACCGGT 1 cut(s) 333
CspCI CAANNNNNGTGG 2 cut(s) 376, 411
CviAII CATG 1 cut(s) 265
CviQI GTAC 2 cut(s) 439, 1223
DpnI GATC 6 cut(s) 192, 345, 381, 493, 795, 1196
DpnII GATC 6 cut(s) 190, 343, 379, 491, 793, 1194
EaeI YGGCCR 1 cut(s) 66
Eam1104I CTCTTC 2 cut(s) 1305, 1403
EarI CTCTTC 2 cut(s) 1305, 1403
EciI GGCGGA 3 cut(s) 15, 311, 695
Eco130I CCWWGG 1 cut(s) 1451
Eco147I AGGCCT 1 cut(s) 764
Eco24I GRGCYC 1 cut(s) 778
Eco31I GGTCTC 4 cut(s) 520, 819, 894, 1124
Eco47I GGWCC 1 cut(s) 734
Eco72I CACGTG 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 797
EcoNI CCTNNNNNAGG 1 cut(s) 769
EcoO109I RGGNCCY 1 cut(s) 1455
EcoRII CCWGG 4 cut(s) 28, 351, 861, 1264
EcoT14I CCWWGG 1 cut(s) 1451
EcoT38I GRGCYC 1 cut(s) 778
ErhI CCWWGG 1 cut(s) 1451
FaeI CATG 1 cut(s) 268
FaiI YATR 5 cut(s) 14, 156, 266, 768, 912
FalI AAGNNNNNCTT 4 cut(s) 425, 457, 1067, 1099
FaqI GGGAC 6 cut(s) 118, 119, 251, 343, 757, 1028
FatI CATG 1 cut(s) 264
FauI CCCGC 1 cut(s) 216
Fnu4HI GCNGC 7 cut(s) 222, 572, 709, 884, 1071, 1161, 1326
FokI GGATG 5 cut(s) 356, 419, 469, 743, 1399
FriOI GRGCYC 1 cut(s) 778
Fsp4HI GCNGC 7 cut(s) 222, 572, 709, 884, 1071, 1161, 1326
FspBI CTAG 1 cut(s) 537
GlaI GCGC 2 cut(s) 476, 627
GluI GCNGC 7 cut(s) 222, 572, 709, 884, 1071, 1161, 1326
GsaI CCCAGC 1 cut(s) 1356
HaeIII GGCC 4 cut(s) 68, 764, 1316, 1457
HgaI GACGC 1 cut(s) 820
HhaI GCGC 2 cut(s) 477, 628
Hin1II CATG 1 cut(s) 268
Hin6I GCGC 2 cut(s) 475, 626
HinP1I GCGC 2 cut(s) 475, 626
HincII GTYRAC 1 cut(s) 1278
HindII GTYRAC 1 cut(s) 1278
Hpy166II GTNNAC 1 cut(s) 1278
Hpy188I TCNGA 9 cut(s) 38, 80, 161, 343, 656, 688, 805, 1023, 1395
Hpy188III TCNNGA 7 cut(s) 103, 194, 797, 997, 1198, 1256, 1427
Hpy8I GTNNAC 1 cut(s) 1278
Hpy99I CGWCG 2 cut(s) 836, 877
HpyAV CCTTC 6 cut(s) 66, 181, 253, 868, 1239, 1393
HpyCH4III ACNGT 3 cut(s) 149, 1379, 1440
HpyCH4IV ACGT 1 cut(s) 120
HpyCH4V TGCA 5 cut(s) 7, 571, 648, 897, 1073
HpyF10VI GCNNNNNNNGC 6 cut(s) 302, 311, 599, 889, 1322, 1358
HpySE526I ACGT 1 cut(s) 120
Hsp92II CATG 1 cut(s) 268
HspAI GCGC 2 cut(s) 475, 626
Kpn2I TCCGGA 1 cut(s) 193
KroI GCCGGC 2 cut(s) 718, 922
KroNI GCCGGC 2 cut(s) 720, 924
KspI CCGCGG 1 cut(s) 1329
Kzo9I GATC 6 cut(s) 190, 343, 379, 491, 793, 1194
LmnI GCTCC 3 cut(s) 28, 58, 1108
Lsp1109I GCAGC 5 cut(s) 233, 583, 895, 1057, 1147
LweI GCATC 4 cut(s) 558, 589, 774, 844
MaeI CTAG 1 cut(s) 537
MaeII ACGT 1 cut(s) 120
MaeIII GTNAC 2 cut(s) 121, 1177
MalI GATC 6 cut(s) 192, 345, 381, 493, 795, 1196
MboI GATC 6 cut(s) 190, 343, 379, 491, 793, 1194
MfeI CAATTG 2 cut(s) 621, 1362
MflI RGATCY 4 cut(s) 190, 379, 491, 793
MhlI GDGCHC 2 cut(s) 616, 778
MluCI AATT 7 cut(s) 229, 506, 621, 979, 1121, 1165, 1362
MlyI GAGTC 5 cut(s) 85, 118, 365, 809, 944
MroI TCCGGA 1 cut(s) 193
MroNI GCCGGC 2 cut(s) 718, 922
MseI TTAA 4 cut(s) 228, 714, 1035, 1137
MspA1I CMGCKG 3 cut(s) 178, 211, 1328
MspCI CTTAAG 1 cut(s) 1136
MspR9I CCNGG 7 cut(s) 30, 137, 293, 353, 863, 1266, 1384
MunI CAATTG 2 cut(s) 621, 1362
Mva1269I GAATGC 2 cut(s) 25, 1162
MvaI CCWGG 4 cut(s) 30, 353, 863, 1266
MvnI CGCG 4 cut(s) 711, 831, 998, 1328
MwoI GCNNNNNNNGC 6 cut(s) 302, 311, 599, 889, 1322, 1358
NaeI GCCGGC 2 cut(s) 720, 924
NciI CCSGG 3 cut(s) 137, 293, 1384
NdeII GATC 6 cut(s) 190, 343, 379, 491, 793, 1194
NgoMIV GCCGGC 2 cut(s) 718, 922
NlaIII CATG 1 cut(s) 268
NlaIV GGNNCC 2 cut(s) 192, 1104
NmeAIII GCCGAG 2 cut(s) 635, 958
NmuCI GTSAC 2 cut(s) 121, 1177
NruI TCGCGA 1 cut(s) 998
NspV TTCGAA 1 cut(s) 1308
PaeR7I CTCGAG 1 cut(s) 797
PceI AGGCCT 1 cut(s) 764
PctI GAATGC 2 cut(s) 25, 1162
PdiI GCCGGC 2 cut(s) 720, 924
PfeI GAWTC 6 cut(s) 445, 657, 681, 700, 749, 1368
PflFI GACNNNGTC 2 cut(s) 830, 1147
PfoI TCCNGGA 1 cut(s) 1382
PinAI ACCGGT 1 cut(s) 333
PkrI GCNGC 7 cut(s) 223, 573, 710, 885, 1072, 1162, 1327
PleI GAGTC 5 cut(s) 85, 118, 364, 808, 943
PmaCI CACGTG 1 cut(s) 121
PmlI CACGTG 1 cut(s) 121
PpsI GAGTC 5 cut(s) 85, 118, 364, 808, 943
Ppu21I YACGTR 1 cut(s) 121
PshBI ATTAAT 2 cut(s) 228, 1035
Psp6I CCWGG 4 cut(s) 28, 351, 861, 1264
PspCI CACGTG 1 cut(s) 121
PspFI CCCAGC 1 cut(s) 1352
PspGI CCWGG 4 cut(s) 28, 351, 861, 1264
PspN4I GGNNCC 2 cut(s) 192, 1104
PspPI GGNCC 2 cut(s) 734, 1455
PsuI RGATCY 4 cut(s) 190, 379, 491, 793
PsyI GACNNNGTC 2 cut(s) 830, 1147
PvuII CAGCTG 1 cut(s) 178
RruI TCGCGA 1 cut(s) 998
RsaI GTAC 2 cut(s) 440, 1224
RsaNI GTAC 2 cut(s) 439, 1223
SacII CCGCGG 1 cut(s) 1329
SaqAI TTAA 4 cut(s) 228, 714, 1035, 1137
SatI GCNGC 7 cut(s) 222, 572, 709, 884, 1071, 1161, 1326
Sau3AI GATC 6 cut(s) 190, 343, 379, 491, 793, 1194
Sau96I GGNCC 2 cut(s) 734, 1455
SchI GAGTC 5 cut(s) 85, 118, 365, 809, 944
ScrFI CCNGG 7 cut(s) 30, 137, 293, 353, 863, 1266, 1384
SduI GDGCHC 2 cut(s) 616, 778
SetI ASST 8 cut(s) 123, 180, 307, 516, 654, 1151, 1207, 1404
SfaNI GCATC 4 cut(s) 558, 589, 774, 844
Sfr274I CTCGAG 1 cut(s) 797
Sfr303I CCGCGG 1 cut(s) 1329
SfuI TTCGAA 1 cut(s) 1308
SgrAI CRCCGGYG 1 cut(s) 333
SgrBI CCGCGG 1 cut(s) 1329
SinI GGWCC 1 cut(s) 734
SlaI CTCGAG 1 cut(s) 797
SmlI CTYRAG 4 cut(s) 758, 788, 797, 1136
SmoI CTYRAG 4 cut(s) 758, 788, 797, 1136
Sse9I AATT 7 cut(s) 229, 506, 621, 979, 1121, 1165, 1362
SseBI AGGCCT 1 cut(s) 764
SspMI CTAG 1 cut(s) 537
StuI AGGCCT 1 cut(s) 764
StyD4I CCNGG 7 cut(s) 28, 135, 291, 351, 861, 1264, 1382
StyI CCWWGG 1 cut(s) 1451
TaaI ACNGT 3 cut(s) 149, 1379, 1440
TaiI ACGT 1 cut(s) 123
TaqI TCGA 7 cut(s) 86, 309, 798, 834, 852, 875, 1308
TaqII GACCGA 1 cut(s) 1196
TasI AATT 7 cut(s) 229, 506, 621, 979, 1121, 1165, 1362
TatI WGTACW 1 cut(s) 438
TauI GCSGC 2 cut(s) 711, 1328
TfiI GAWTC 6 cut(s) 445, 657, 681, 700, 749, 1368
Tru1I TTAA 4 cut(s) 228, 714, 1035, 1137
Tru9I TTAA 4 cut(s) 228, 714, 1035, 1137
TscAI CASTG 1 cut(s) 1443
TseFI GTSAC 2 cut(s) 121, 1177
TseI GCWGC 5 cut(s) 221, 571, 883, 1070, 1160
Tsp45I GTSAC 2 cut(s) 121, 1177
TspDTI ATGAA 4 cut(s) 293, 683, 827, 1084
TspGWI ACGGA 3 cut(s) 122, 483, 761
TspRI CASTG 1 cut(s) 1443
Tth111I GACNNNGTC 2 cut(s) 830, 1147
Vha464I CTTAAG 1 cut(s) 1136
VpaK11BI GGWCC 1 cut(s) 734
VspI ATTAAT 2 cut(s) 228, 1035
XagI CCTNNNNNAGG 1 cut(s) 769
XapI RAATTY 1 cut(s) 506
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XhoI CTCGAG 1 cut(s) 797
XspI CTAG 1 cut(s) 537
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.