AT3G51930

WD domain, G-beta repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0014503
Physical Location & Seq
Forward (+)
19271347 .. 19273064
1718 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G51930.1

Sequence Viewer

Length: 1248 bp
ATGGTGAGATCAATCCAAGAAGGAGTCTTGATGTCTTCATCTTCTTCCTCAACCACAAGCAACAGCAACGACTCCGACGGTTCTCTCAGCCCATCTGCGTCCACCAAAAGCTTCGTCCTCAACACTCTCCGTCCGCCTATCACCGGCGCGTACAAGCCACTCGCTGTTCTCTCTGCTCATGTCGGCTCTGTTTCTTCCTTAGCGCTCTGTGGTGAGTTCTTGCTGAGTGCGTCTCAGGGAAAAGATATCATCGTTTGGCAACAGCCTGATCTCAAGATCTTTGCGAAATTCGGACAAGGTGATGGGTCTGTGAAGGCTTTGGTCAGCGTGGGAAGCAAAGTGTTCACGGCGCATCAAGATAGTAGAATCAGAGTTTGGAAAGTTTCTCGGAGAAACTCTGAGAATGCTTTCAGGCTTGTTGATACACTTCCCACGACTAAAGACTATCTGGGGAAGTTTATGAAACAGAGCAATTACGTTCAGACGAGGAGGAACCATAAGCGTCTCTGGATTGAACACGCCGATAGCATTTCGTGCCTTGCGGTACACGCTGGGATAATCTACTCTGGATCGTGGGATAAGACTCTCAAAGTCTGGAGACTGTCGGATCTCAAGTGTCTTGAATCGATCAAGGCTCATGATGACGCAATCAATGGTCTTGTCGCCGGAGATGGCAGGGTATACTCTGCTTCCGCAGATGGGAAGGTCAAGATATGGGGGAAAGAGAAGAGAAAGCAGATTGAGTCTACTTCTTCCTCTTCCTCTTCTTTACATGTTTTGAAGGCTACGTTGGAGGGTCGTGCAGAGGTGTCAGTGAACTCGGTGGTGGTTTCCGGTGACGGTAATTGGGTATACGGAGGAGGATCAGACGGGTTTGTGATCGGATGGGAGAAGAAAGAGAAAGAAGGAGACTTTGAGGAATGGAGATTAGGGTTTGAGACAAGAGGACATAACATGGCAGTTCTGTGTATGTGTGTAGTTGGGGAAATGGTATGCAGTGGATCGGCTGATAAGAGCATTGGGTTGTGGAGGAGAGAAGTGACTGGCATGCTCTGTAAATTCGGAGTCATACATGGCCATGAAGGTCCGGTCAAATGCTTACAAGCGTCGCCAAACAATGTCGGTGCTGGCTTCATGCTTTACAGTGGAGGCCTTGACAAGAGTCTCAGGGTTTGGTGGGTACCAAAACAAGACAACTTAGAAGAGAAGAAATCAAGCTTTAAGACATTGTTGACGCAAAAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WD40

Protein Analysis

415

Amino Acids

45.28

Weight (kDa)

9.17

Isoelectric Point (pI)

37.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_SCAP PF24017 55 - 239 1.3e-09 SCAP Beta-propeller
Beta-prop_WDR5 PF25175 57 - 249 1.2e-14 WDR5 beta-propeller domain
WD40_WDHD1_1st PF24817 109 - 262 6.6e-07 WDHD1 first WD40 domain
WDR55 PF24796 162 - 394 4.3e-06 WDR55
Beta-prop_WDR3_1st PF25173 171 - 255 4.6e-07 WDR3 first beta-propeller domain
Beta-prop_TEP1_2nd PF25047 172 - 257 2.2e-06 TEP-1 second beta-propeller
WD40_Prp19 PF24814 176 - 400 1.8e-14 Prp19 WD40 domain
Beta-prop_WDR3_2nd PF25172 184 - 271 4.3e-08 WDR3 second beta-propeller domain
Beta-prop_THOC3 PF25174 186 - 255 3.5e-07 THOC3 beta-propeller domain
Beta-prop_WDR5 PF25175 262 - 394 5.9e-09 WDR5 beta-propeller domain
Beta-prop_WDR3_1st PF25173 263 - 401 6e-09 WDR3 first beta-propeller domain
WD40_CDC20-Fz PF24807 268 - 400 4e-06 CDC20/Fizzy WD40 domain
Beta-prop_TEP1_2nd PF25047 285 - 396 1.7e-08 TEP-1 second beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014503)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G51930
fragaria_vesca FvH4_7g02030
malus_domestica MD02G1296500.v1.1 MD07G1027800.v1.1
prunus_persica Prupe.2G027900_v2.0.a1 Prupe.2G027900_v2.0.a1
pyrus_communis pycom02g24950 pycom07g02110
rosa_chinensis RchiOBHm_Chr1g0319521
rosa_laevigata RLG00000030475
rosa_multiflora Rmu_sc0002539.1_g000012
rosa_roxburghii Rroxscaffold_4G00328310
rosa_samantha Rh1AG040100 Rh1BG037000 Rh1CG041100 Rh1DG028800
rosa_wichuraiana Rw1G003240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1180
AccB1I GGYRCC 1 cut(s) 1180
AccI GTMKAC 3 cut(s) 681, 746, 852
AccII CGCG 1 cut(s) 149
AciI CCGC 3 cut(s) 134, 542, 693
AclWI GGATC 4 cut(s) 577, 615, 871, 1009
AcoI YGGCCR 1 cut(s) 1075
AcsI RAATTY 2 cut(s) 287, 1058
AfaI GTAC 3 cut(s) 152, 546, 1182
AfeI AGCGCT 1 cut(s) 204
AfiI CCNNNNNNNGG 2 cut(s) 143, 699
AflIII ACRYGT 1 cut(s) 772
AgsI TTSAA 3 cut(s) 515, 623, 781
AjuI GAANNNNNNNTTGG 4 cut(s) 358, 390, 773, 805
AluBI AGCT 2 cut(s) 111, 1218
AluI AGCT 2 cut(s) 111, 1218
Alw26I GTCTC 6 cut(s) 237, 509, 592, 903, 932, 1169
AlwI GGATC 4 cut(s) 577, 615, 871, 1009
Aor51HI AGCGCT 1 cut(s) 204
AoxI GGCC 2 cut(s) 1075, 1150
ApoI RAATTY 2 cut(s) 287, 1058
ArsI GACNNNNNNTTYG 2 cut(s) 99, 131
Asp700I GAANNNNTTC 1 cut(s) 407
Asp718I GGTACC 1 cut(s) 1180
AspLEI GCGC 3 cut(s) 149, 205, 352
AspS9I GGNCC 1 cut(s) 1085
AsuHPI GGTGA 5 cut(s) 16, 133, 224, 311, 848
AvaII GGWCC 1 cut(s) 1085
BalI TGGCCA 1 cut(s) 1077
BanI GGYRCC 1 cut(s) 1180
BbsI GAAGAC 1 cut(s) 27
BccI CCATC 5 cut(s) 100, 296, 665, 692, 879
BceAI ACGGC 1 cut(s) 363
BcoDI GTCTC 6 cut(s) 237, 509, 592, 903, 932, 1169
BfoI RGCGCY 1 cut(s) 206
BglII AGATCT 1 cut(s) 276
Bme18I GGWCC 1 cut(s) 1085
BmgT120I GGNCC 1 cut(s) 1085
BmiI GGNNCC 2 cut(s) 494, 1182
BmsI GCATC 1 cut(s) 361
BoxI GACNNNNGTC 1 cut(s) 1161
BpiI GAAGAC 1 cut(s) 27
BplI GAGNNNNNCTC 2 cut(s) 217, 249
BpmI CTGGAG 1 cut(s) 616
Bpu10I CCTNAGC 1 cut(s) 199
BpuEI CTTGAG 2 cut(s) 257, 596
Bsa29I ATCGAT 1 cut(s) 626
BsaWI WCCGGW 2 cut(s) 833, 1087
Bsc4I CCNNNNNNNGG 2 cut(s) 143, 699
Bse118I RCCGGY 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 1048
BseCI ATCGAT 1 cut(s) 626
BseGI GGATG 1 cut(s) 890
BseLI CCNNNNNNNGG 2 cut(s) 143, 699
BseMII CTCAG 5 cut(s) 100, 215, 248, 390, 1180
BseNI ACTGG 1 cut(s) 1048
BseRI GAGGAG 3 cut(s) 502, 873, 1045
BseYI CCCAGC 1 cut(s) 551
BsgI GTGCAG 1 cut(s) 822
Bsh1236I CGCG 1 cut(s) 149
BshFI GGCC 2 cut(s) 1077, 1152
BshNI GGYRCC 1 cut(s) 1180
BshVI ATCGAT 1 cut(s) 626
BsiSI CCGG 4 cut(s) 144, 666, 834, 1088
BslI CCNNNNNNNGG 2 cut(s) 143, 699
BsmAI GTCTC 6 cut(s) 237, 509, 592, 903, 932, 1169
BsmBI CGTCTC 2 cut(s) 237, 509
BsmI GAATGC 1 cut(s) 409
BsnI GGCC 2 cut(s) 1077, 1152
Bsp143I GATC 9 cut(s) 8, 268, 276, 569, 607, 627, 863, 879, 1001
BspACI CCGC 3 cut(s) 134, 542, 693
BspANI GGCC 2 cut(s) 1077, 1152
BspCNI CTCAG 5 cut(s) 99, 216, 247, 391, 1179
BspDI ATCGAT 1 cut(s) 626
BspFNI CGCG 1 cut(s) 149
BspHI TCATGA 1 cut(s) 637
BspLI GGNNCC 2 cut(s) 494, 1182
BspPI GGATC 4 cut(s) 577, 615, 871, 1009
BspT107I GGYRCC 1 cut(s) 1180
BsrFI RCCGGY 1 cut(s) 143
BsrI ACTGG 1 cut(s) 1048
BssAI RCCGGY 1 cut(s) 143
BssMI GATC 9 cut(s) 8, 268, 276, 569, 607, 627, 863, 879, 1001
BssNAI GTATAC 2 cut(s) 682, 853
Bst1107I GTATAC 2 cut(s) 682, 853
Bst4CI ACNGT 4 cut(s) 80, 603, 842, 1145
Bst6I CTCTTC 4 cut(s) 722, 763, 769, 1197
BstAPI GCANNNNNTGC 1 cut(s) 534
BstC8I GCNNGC 2 cut(s) 1049, 1129
BstDEI CTNAG 7 cut(s) 86, 199, 224, 234, 399, 1166, 1198
BstF5I GGATG 1 cut(s) 890
BstFNI CGCG 1 cut(s) 149
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 3 cut(s) 149, 205, 352
BstKTI GATC 9 cut(s) 11, 271, 279, 572, 610, 630, 866, 882, 1004
BstMAI GTCTC 6 cut(s) 237, 509, 592, 903, 932, 1169
BstMBI GATC 9 cut(s) 8, 268, 276, 569, 607, 627, 863, 879, 1001
BstMWI GCNNNNNNNGC 3 cut(s) 333, 534, 548
BstNSI RCATGY 2 cut(s) 776, 1051
BstPAI GACNNNNGTC 1 cut(s) 1161
BstUI CGCG 1 cut(s) 149
BstV2I GAAGAC 1 cut(s) 27
BstX2I RGATCY 2 cut(s) 276, 607
BstYI RGATCY 2 cut(s) 276, 607
BstZ17I GTATAC 2 cut(s) 682, 853
Bsu15I ATCGAT 1 cut(s) 626
BsuRI GGCC 2 cut(s) 1077, 1152
BsuTUI ATCGAT 1 cut(s) 626
BtsCI GGATG 1 cut(s) 890
BtsI GCAGTG 1 cut(s) 1003
BtsIMutI CAGTG 3 cut(s) 819, 1003, 1150
Cac8I GCNNGC 2 cut(s) 1049, 1129
CciI TCATGA 1 cut(s) 637
CfoI GCGC 3 cut(s) 149, 205, 352
Cfr10I RCCGGY 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 1085
ClaI ATCGAT 1 cut(s) 626
CseI GACGC 6 cut(s) 87, 219, 491, 653, 1095, 1243
Csp6I GTAC 3 cut(s) 151, 545, 1181
CviAII CATG 8 cut(s) 179, 638, 773, 955, 1048, 1073, 1079, 1135
CviQI GTAC 3 cut(s) 151, 545, 1181
DdeI CTNAG 7 cut(s) 86, 199, 224, 234, 399, 1166, 1198
DpnI GATC 9 cut(s) 10, 270, 278, 571, 609, 629, 865, 881, 1003
DpnII GATC 9 cut(s) 8, 268, 276, 569, 607, 627, 863, 879, 1001
EaeI YGGCCR 1 cut(s) 1075
Eam1104I CTCTTC 4 cut(s) 722, 763, 769, 1197
EarI CTCTTC 4 cut(s) 722, 763, 769, 1197
EciI GGCGGA 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 1152
Eco32I GATATC 1 cut(s) 247
Eco47I GGWCC 1 cut(s) 1085
Eco47III AGCGCT 1 cut(s) 204
EcoRV GATATC 1 cut(s) 247
Esp3I CGTCTC 2 cut(s) 237, 509
FaeI CATG 8 cut(s) 182, 641, 776, 958, 1051, 1076, 1082, 1138
FatI CATG 8 cut(s) 178, 637, 772, 954, 1047, 1072, 1078, 1134
FblI GTMKAC 3 cut(s) 681, 746, 852
FokI GGATG 1 cut(s) 897
GlaI GCGC 3 cut(s) 148, 204, 351
GsaI CCCAGC 1 cut(s) 555
GsuI CTGGAG 1 cut(s) 616
HaeII RGCGCY 1 cut(s) 206
HaeIII GGCC 2 cut(s) 1077, 1152
HapII CCGG 4 cut(s) 144, 666, 834, 1088
HgaI GACGC 6 cut(s) 87, 219, 491, 653, 1095, 1243
HhaI GCGC 3 cut(s) 149, 205, 352
Hin1II CATG 8 cut(s) 182, 641, 776, 958, 1051, 1076, 1082, 1138
Hin6I GCGC 3 cut(s) 147, 203, 350
HinP1I GCGC 3 cut(s) 147, 203, 350
HincII GTYRAC 1 cut(s) 1233
HindII GTYRAC 1 cut(s) 1233
HindIII AAGCTT 2 cut(s) 109, 1216
HinfI GANTC 8 cut(s) 24, 71, 366, 583, 623, 743, 1065, 1162
HpaII CCGG 4 cut(s) 144, 666, 834, 1088
HphI GGTGA 5 cut(s) 16, 133, 224, 311, 848
Hpy166II GTNNAC 8 cut(s) 102, 345, 547, 682, 747, 817, 853, 1233
Hpy188III TCNNGA 9 cut(s) 28, 274, 356, 508, 567, 595, 620, 638, 709
Hpy8I GTNNAC 8 cut(s) 102, 345, 547, 682, 747, 817, 853, 1233
Hpy99I CGWCG 2 cut(s) 80, 1111
HpyAV CCTTC 6 cut(s) 14, 307, 697, 775, 899, 1076
HpyCH4III ACNGT 4 cut(s) 80, 603, 842, 1145
HpyCH4IV ACGT 2 cut(s) 477, 788
HpyCH4V TGCA 2 cut(s) 803, 996
HpyF10VI GCNNNNNNNGC 3 cut(s) 333, 534, 548
HpyF3I CTNAG 7 cut(s) 86, 199, 224, 234, 399, 1166, 1198
HpySE526I ACGT 2 cut(s) 477, 788
Hsp92II CATG 8 cut(s) 182, 641, 776, 958, 1051, 1076, 1082, 1138
HspAI GCGC 3 cut(s) 147, 203, 350
KpnI GGTACC 1 cut(s) 1184
Kzo9I GATC 9 cut(s) 8, 268, 276, 569, 607, 627, 863, 879, 1001
LweI GCATC 1 cut(s) 361
MaeII ACGT 2 cut(s) 477, 788
MaeIII GTNAC 2 cut(s) 836, 1039
MalI GATC 9 cut(s) 10, 270, 278, 571, 609, 629, 865, 881, 1003
MboI GATC 9 cut(s) 8, 268, 276, 569, 607, 627, 863, 879, 1001
MflI RGATCY 2 cut(s) 276, 607
MlsI TGGCCA 1 cut(s) 1077
MluCI AATT 4 cut(s) 287, 472, 844, 1058
MluNI TGGCCA 1 cut(s) 1077
MlyI GAGTC 6 cut(s) 33, 65, 577, 752, 1074, 1171
MmeI TCCRAC 3 cut(s) 99, 585, 771
Mox20I TGGCCA 1 cut(s) 1077
MroXI GAANNNNTTC 1 cut(s) 407
MscI TGGCCA 1 cut(s) 1077
MseI TTAA 1 cut(s) 1221
MslI CAYNNNNRTG 1 cut(s) 1077
Msp20I TGGCCA 1 cut(s) 1077
MspI CCGG 4 cut(s) 144, 666, 834, 1088
Mva1269I GAATGC 1 cut(s) 409
MvnI CGCG 1 cut(s) 149
MwoI GCNNNNNNNGC 3 cut(s) 333, 534, 548
NdeII GATC 9 cut(s) 8, 268, 276, 569, 607, 627, 863, 879, 1001
NlaIII CATG 8 cut(s) 182, 641, 776, 958, 1051, 1076, 1082, 1138
NlaIV GGNNCC 2 cut(s) 494, 1182
NmuCI GTSAC 2 cut(s) 836, 1039
NspI RCATGY 2 cut(s) 776, 1051
PaeI GCATGC 1 cut(s) 1051
PagI TCATGA 1 cut(s) 637
PceI AGGCCT 1 cut(s) 1152
PciI ACATGT 1 cut(s) 772
PctI GAATGC 1 cut(s) 409
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 2 cut(s) 366, 623
PleI GAGTC 6 cut(s) 32, 65, 577, 751, 1073, 1170
PpsI GAGTC 6 cut(s) 32, 65, 577, 751, 1073, 1170
PscI ACATGT 1 cut(s) 772
PshAI GACNNNNGTC 1 cut(s) 1161
PspFI CCCAGC 1 cut(s) 551
PspN4I GGNNCC 2 cut(s) 494, 1182
PspPI GGNCC 1 cut(s) 1085
PsuI RGATCY 2 cut(s) 276, 607
RsaI GTAC 3 cut(s) 152, 546, 1182
RsaNI GTAC 3 cut(s) 151, 545, 1181
RseI CAYNNNNRTG 1 cut(s) 1077
SaqAI TTAA 1 cut(s) 1221
Sau3AI GATC 9 cut(s) 8, 268, 276, 569, 607, 627, 863, 879, 1001
Sau96I GGNCC 1 cut(s) 1085
SchI GAGTC 6 cut(s) 33, 65, 577, 752, 1074, 1171
SetI ASST 8 cut(s) 113, 301, 480, 708, 791, 810, 1087, 1220
SfaNI GCATC 1 cut(s) 361
SgrAI CRCCGGYG 1 cut(s) 143
SinI GGWCC 1 cut(s) 1085
SmiMI CAYNNNNRTG 1 cut(s) 1077
SmlI CTYRAG 2 cut(s) 272, 611
SmoI CTYRAG 2 cut(s) 272, 611
SphI GCATGC 1 cut(s) 1051
Sse9I AATT 4 cut(s) 287, 472, 844, 1058
SseBI AGGCCT 1 cut(s) 1152
SsiI CCGC 3 cut(s) 134, 542, 693
StuI AGGCCT 1 cut(s) 1152
TaaI ACNGT 4 cut(s) 80, 603, 842, 1145
TaiI ACGT 2 cut(s) 480, 791
TaqI TCGA 1 cut(s) 626
TasI AATT 4 cut(s) 287, 472, 844, 1058
TfiI GAWTC 2 cut(s) 366, 623
Tru1I TTAA 1 cut(s) 1221
Tru9I TTAA 1 cut(s) 1221
TscAI CASTG 3 cut(s) 819, 1003, 1150
TseFI GTSAC 2 cut(s) 836, 1039
Tsp45I GTSAC 2 cut(s) 836, 1039
TspDTI ATGAA 4 cut(s) 27, 476, 1095, 1123
TspGWI ACGGA 2 cut(s) 119, 870
TspRI CASTG 3 cut(s) 819, 1003, 1150
VpaK11BI GGWCC 1 cut(s) 1085
XapI RAATTY 2 cut(s) 287, 1058
XceI RCATGY 2 cut(s) 776, 1051
XmiI GTMKAC 3 cut(s) 681, 746, 852
XmnI GAANNNNTTC 1 cut(s) 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.