Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008376

Physical Location & Seq

Genomic Coordinates Reverse (-)

19282390 .. 19284210

Gene Structure 1821 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTTTTGTTGTTGCAAGGATTGCAGAGGAAACCAACGAGTTTCTAACTTTGATTCTCTAACAGGTGTTTTCTTTGGAGATCTTGAGTTTGGACCTCAGAATCAAAGATATATAAAGATGAATGAGGAAGAAGATAAAGATCAAGATCGAGTAACGAGAGGATGTAGTCACACTCATAGCTGTAACCCTCCAGGCCCAGAGGATGCTTCTCACTCCCACACATGCTTCCACGCTCACACTCATCTCATCATCTCTGATCAGCAAGAGAATGATCATTCTGACAGTAGCAACAAGAAACGGTTATGTGGTAATAGAGAGGCAGTGAGGAAGTACAGGGAGAAGAAGAAGGCTCGCACTGCATACCTTGAAGATGAAGTGATGAGATTGCAATCTCTGAATGAGCAATTCCTTAGAAAACTTCAGAGCCAAGAAATGGTGGAAACTGAATTGATCAGACTCCGGGCTCTTCTGGTAGAGATGCAGGGGAAAATTGAAGTTGAACTTTGTAGTTTCTCGTTTCAGAAACAATGCAACGGTTCTGGTTTTGTGTTCAAAGAAGATGGATGCAACTTAGCAACAAGTAATATGATGTGTGAAGCGGCAAGAGTGGAGTGCGAGGAGGGCCAAACACTTCATGATCCTATTCAATCTTTTGTTCCTCAACCACCACCATTCTCACGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

227

Amino Acids

26.09

Weight (kDa)

5.87

Isoelectric Point (pI)

44.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	93 - 144	6.3e-13	Basic region leucine zipper
bZIP_1	PF00170	97 - 142	9.5e-07	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51960 AT3G51960 AT3G51960
fragaria_vesca	FvH4_7g01951
malus_domestica	MD02G1298400.v1.1 MD07G1025300.v1.1
prunus_persica	Prupe.2G025800_v2.0.a1 Prupe.2G025800_v2.0.a1 Prupe.2G025800_v2.0.a1
pyrus_communis	pycom02g25130 pycom07g01960
rosa_chinensis	RchiOBHm_Chr1g0318951
rosa_laevigata	RLG00000030515
rosa_multiflora	Rmu_sc0006626.1_g000014
rosa_roxburghii	Rroxscaffold_4G00328750
rosa_rugosa	Rorug01G0025700 Rorug01G0025800 Rorug01G0025900
rosa_samantha	Rh1AG037500 Rh1BG033900 Rh1CG036700 Rh1DG033600
rosa_wichuraiana	Rw1G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	433
AciI	CCGC	1 cut(s)	599
AclWI	GGATC	1 cut(s)	632
AcuI	CTGAAG	1 cut(s)	404
AfaI	GTAC	1 cut(s)	332
AfiI	CCNNNNNNNGG	1 cut(s)	433
AgsI	TTSAA	5 cut(s)	368, 494, 500, 553, 647
AjnI	CCWGG	1 cut(s)	190
AluBI	AGCT	1 cut(s)	180
AluI	AGCT	1 cut(s)	180
AlwI	GGATC	1 cut(s)	632
AoxI	GGCC	2 cut(s)	193, 622
AspS9I	GGNCC	3 cut(s)	92, 194, 622
AsuC2I	CCSGG	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	466
BccI	CCATC	1 cut(s)	554
BciT130I	CCWGG	1 cut(s)	192
BclI	TGATCA	3 cut(s)	256, 271, 450
BcnI	CCSGG	1 cut(s)	461
BglII	AGATCT	1 cut(s)	79
BisI	GCNGC	1 cut(s)	600
BlsI	GCNGC	1 cut(s)	601
Bme1390I	CCNGG	2 cut(s)	192, 461
Bme18I	GGWCC	1 cut(s)	92
BmgT120I	GGNCC	3 cut(s)	92, 194, 622
BmrFI	CCNGG	2 cut(s)	192, 461
BmsI	GCATC	3 cut(s)	193, 468, 554
BpmI	CTGGAG	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	461
BsaBI	GATNNNNATC	3 cut(s)	138, 144, 388
Bsc4I	CCNNNNNNNGG	1 cut(s)	433
Bse8I	GATNNNNATC	3 cut(s)	138, 144, 388
BseBI	CCWGG	1 cut(s)	192
BseGI	GGATG	3 cut(s)	167, 208, 569
BseJI	GATNNNNATC	3 cut(s)	138, 144, 388
BseLI	CCNNNNNNNGG	1 cut(s)	433
BseMII	CTCAG	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	632
BshFI	GGCC	2 cut(s)	195, 624
BsiSI	CCGG	1 cut(s)	460
BslI	CCNNNNNNNGG	1 cut(s)	433
BsnI	GGCC	2 cut(s)	195, 624
Bsp1286I	GDGCHC	1 cut(s)	466
Bsp143I	GATC	7 cut(s)	79, 139, 145, 256, 271, 450, 637
BspACI	CCGC	1 cut(s)	599
BspANI	GGCC	2 cut(s)	195, 624
BspCNI	CTCAG	1 cut(s)	109
BspHI	TCATGA	1 cut(s)	634
BspPI	GGATC	1 cut(s)	632
BspQI	GCTCTTC	1 cut(s)	471
BssMI	GATC	7 cut(s)	79, 139, 145, 256, 271, 450, 637
Bst2UI	CCWGG	1 cut(s)	192
Bst4CI	ACNGT	3 cut(s)	284, 300, 536
Bst6I	CTCTTC	1 cut(s)	471
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	3 cut(s)	96, 410, 571
BstF5I	GGATG	3 cut(s)	167, 208, 569
BstKTI	GATC	7 cut(s)	82, 142, 148, 259, 274, 453, 640
BstMBI	GATC	7 cut(s)	79, 139, 145, 256, 271, 450, 637
BstMWI	GCNNNNNNNGC	3 cut(s)	21, 356, 621
BstNI	CCWGG	1 cut(s)	192
BstNSI	RCATGY	1 cut(s)	225
BstSCI	CCNGG	2 cut(s)	190, 459
BstX2I	RGATCY	1 cut(s)	79
BstYI	RGATCY	1 cut(s)	79
BsuRI	GGCC	2 cut(s)	195, 624
BtsCI	GGATG	3 cut(s)	167, 208, 569
BtsI	GCAGTG	2 cut(s)	327, 354
BtsIMutI	CAGTG	2 cut(s)	327, 354
Cac8I	GCNNGC	1 cut(s)	352
CciI	TCATGA	1 cut(s)	634
Cfr13I	GGNCC	3 cut(s)	92, 194, 622
Csp6I	GTAC	1 cut(s)	331
CviAII	CATG	2 cut(s)	222, 635
CviJI	RGCY	6 cut(s)	180, 195, 350, 426, 464, 624
CviKI_1	RGCY	6 cut(s)	180, 195, 350, 426, 464, 624
CviQI	GTAC	1 cut(s)	331
DdeI	CTNAG	3 cut(s)	96, 410, 571
DpnI	GATC	7 cut(s)	81, 141, 147, 258, 273, 452, 639
DpnII	GATC	7 cut(s)	79, 139, 145, 256, 271, 450, 637
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco24I	GRGCYC	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	92
Eco57I	CTGAAG	1 cut(s)	404
EcoRII	CCWGG	1 cut(s)	190
EcoT38I	GRGCYC	1 cut(s)	466
FaeI	CATG	2 cut(s)	225, 638
FaiI	YATR	8 cut(s)	111, 113, 177, 223, 304, 361, 587, 636
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FatI	CATG	2 cut(s)	221, 634
FbaI	TGATCA	3 cut(s)	256, 271, 450
Fnu4HI	GCNGC	1 cut(s)	600
FokI	GGATG	3 cut(s)	174, 215, 576
FriOI	GRGCYC	1 cut(s)	466
Fsp4HI	GCNGC	1 cut(s)	600
GluI	GCNGC	1 cut(s)	600
GsuI	CTGGAG	1 cut(s)	174
HaeIII	GGCC	2 cut(s)	195, 624
HapII	CCGG	1 cut(s)	460
Hin1II	CATG	2 cut(s)	225, 638
HinfI	GANTC	3 cut(s)	53, 100, 456
HpaII	CCGG	1 cut(s)	460
Hpy188I	TCNGA	7 cut(s)	99, 256, 280, 396, 423, 455, 522
Hpy188III	TCNNGA	3 cut(s)	83, 143, 635
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	3 cut(s)	284, 300, 536
HpyCH4IV	ACGT	1 cut(s)	679
HpyCH4V	TGCA	7 cut(s)	15, 24, 359, 388, 481, 531, 567
HpyF10VI	GCNNNNNNNGC	3 cut(s)	21, 356, 621
HpyF3I	CTNAG	3 cut(s)	96, 410, 571
HpySE526I	ACGT	1 cut(s)	679
Hsp92II	CATG	2 cut(s)	225, 638
Ksp22I	TGATCA	3 cut(s)	256, 271, 450
Kzo9I	GATC	7 cut(s)	79, 139, 145, 256, 271, 450, 637
LguI	GCTCTTC	1 cut(s)	471
LpnPI	CCDG	9 cut(s)	48, 177, 204, 210, 319, 455, 467, 473, 525
LweI	GCATC	3 cut(s)	193, 468, 554
MaeII	ACGT	1 cut(s)	679
MaeIII	GTNAC	3 cut(s)	151, 167, 182
MalI	GATC	7 cut(s)	81, 141, 147, 258, 273, 452, 639
MboI	GATC	7 cut(s)	79, 139, 145, 256, 271, 450, 637
MboII	GAAGA	7 cut(s)	140, 143, 352, 355, 380, 458, 569
MflI	RGATCY	1 cut(s)	79
MhlI	GDGCHC	1 cut(s)	466
MluCI	AATT	3 cut(s)	404, 446, 489
MlyI	GAGTC	1 cut(s)	450
MseI	TTAA	1 cut(s)	682
MspI	CCGG	1 cut(s)	460
MspR9I	CCNGG	2 cut(s)	192, 461
MvaI	CCWGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	3 cut(s)	21, 356, 621
NciI	CCSGG	1 cut(s)	461
NdeII	GATC	7 cut(s)	79, 139, 145, 256, 271, 450, 637
NlaIII	CATG	2 cut(s)	225, 638
NmuCI	GTSAC	1 cut(s)	167
NspI	RCATGY	1 cut(s)	225
PagI	TCATGA	1 cut(s)	634
PciSI	GCTCTTC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	53, 100
PflMI	CCANNNNNTGG	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	601
PleI	GAGTC	1 cut(s)	450
PpsI	GAGTC	1 cut(s)	450
Psp6I	CCWGG	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	190
PspPI	GGNCC	3 cut(s)	92, 194, 622
PsuI	RGATCY	1 cut(s)	79
RsaI	GTAC	1 cut(s)	332
RsaNI	GTAC	1 cut(s)	331
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	1 cut(s)	682
SatI	GCNGC	1 cut(s)	600
Sau3AI	GATC	7 cut(s)	79, 139, 145, 256, 271, 450, 637
Sau96I	GGNCC	3 cut(s)	92, 194, 622
SchI	GAGTC	1 cut(s)	450
ScrFI	CCNGG	2 cut(s)	192, 461
SduI	GDGCHC	1 cut(s)	466
SetI	ASST	5 cut(s)	67, 97, 182, 366, 682
SfaNI	GCATC	3 cut(s)	193, 468, 554
SinI	GGWCC	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	3 cut(s)	404, 446, 489
SsiI	CCGC	1 cut(s)	599
StyD4I	CCNGG	2 cut(s)	190, 459
TaaI	ACNGT	3 cut(s)	284, 300, 536
TaiI	ACGT	1 cut(s)	682
TaqI	TCGA	1 cut(s)	148
TasI	AATT	3 cut(s)	404, 446, 489
TatI	WGTACW	1 cut(s)	330
TauI	GCSGC	1 cut(s)	602
TfiI	GAWTC	2 cut(s)	53, 100
Tru1I	TTAA	1 cut(s)	682
Tru9I	TTAA	1 cut(s)	682
TscAI	CASTG	2 cut(s)	327, 361
TseFI	GTSAC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	167
TspDTI	ATGAA	3 cut(s)	134, 387, 623
TspRI	CASTG	2 cut(s)	327, 361
Van91I	CCANNNNNTGG	1 cut(s)	433
VpaK11BI	GGWCC	1 cut(s)	92
XceI	RCATGY	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.