Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0008376

Physical Location & Seq

Genomic Coordinates Reverse (-)

61837469 .. 61838239

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00328750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGATGATGGTGAGTTAGAGACTTTAGACCATGATGTATTTCCAAAACCCAATTCCTCTGGTAATTTCCAAACTTCAACTTCTGTAGATACATTTCGGACATGCCTTCACACTCACACATGCAACCAACCTGGCCCTGATGCTGCACATACACACACTTGCTATCACACACACACCCAAGTTCTTCCGTCGGAGGAAAATGATGGTGCTAAGAGTAAAGAGCATTCAGTATTGAAACCAAGAAGAAGGAGGCCTTCAGGAAATAGAGAAGCAGTTAGGAAGTACAGAGAAAAAAAGAAGGCACACACAGCTTATTTAGAAGGGGAAGTCAAGAAATTGCAGGTGTTGAACCAGCAACTTGTTAGGAAATTACAGGGGAAGGCAAGTCTTGAAGCAGAGTTTGTAAGGCTTAGAAACCTTTTGCTGGACTTTAGAGGAAAAGTTGATAGTGAGTTGGGTGCTTTTCCATTCCAAAAACAGAGTTATAAAACTGGTGCTATATTCAAGGAAGGAGATTGTGAACTGCAATCTACTGTTGGAGAAACTGGCCTTCGTTGTCAAACTGATTTACCATGCCACTGTCCACCTGCTGTTGGGGGATCATTGCAGGCCAGAACTGATGCGAGTGGGAAAACAATGGTGTCATTTGGAGGAAATTGTCAGCCCCCGGTAATTGATTGCCGAGAAAATCCAAATGGGATGGCAAGTGCTGAAGTAGAAAATCTGCACATAGCAGAAACCTTGGCATCATCAGCAACCCAAGATAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

256

Amino Acids

28.22

Weight (kDa)

7.15

Isoelectric Point (pI)

33.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	81 - 124	1.6e-11	Basic region leucine zipper
bZIP_1	PF00170	81 - 125	1.4e-07	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51960 AT3G51960 AT3G51960
fragaria_vesca	FvH4_7g01951
malus_domestica	MD02G1298400.v1.1 MD07G1025300.v1.1
prunus_persica	Prupe.2G025800_v2.0.a1 Prupe.2G025800_v2.0.a1 Prupe.2G025800_v2.0.a1
pyrus_communis	pycom02g25130 pycom07g01960
rosa_chinensis	RchiOBHm_Chr1g0318951
rosa_laevigata	RLG00000030515
rosa_multiflora	Rmu_sc0006626.1_g000014
rosa_roxburghii	Rroxscaffold_4G00328750
rosa_rugosa	Rorug01G0025700 Rorug01G0025800 Rorug01G0025900
rosa_samantha	Rh1AG037500 Rh1BG033900 Rh1CG036700 Rh1DG033600
rosa_wichuraiana	Rw1G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	486
AarI	CACCTGC	2 cut(s)	331, 595
Acc36I	ACCTGC	2 cut(s)	331, 595
AclWI	GGATC	1 cut(s)	607
AcuI	CTGAAG	2 cut(s)	240, 732
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	2 cut(s)	424, 593
AgsI	TTSAA	5 cut(s)	78, 235, 349, 392, 505
AjnI	CCWGG	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	37, 69
AluBI	AGCT	1 cut(s)	311
AluI	AGCT	1 cut(s)	311
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	1 cut(s)	607
AoxI	GGCC	4 cut(s)	133, 251, 547, 609
ApeKI	GCWGC	1 cut(s)	143
AspS9I	GGNCC	1 cut(s)	134
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	1 cut(s)	23
BbvI	GCAGC	1 cut(s)	130
BccI	CCATC	3 cut(s)	2, 197, 694
BciT130I	CCWGG	1 cut(s)	132
BcnI	CCSGG	1 cut(s)	668
BcoDI	GTCTC	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	84
BfuAI	ACCTGC	2 cut(s)	331, 595
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	2 cut(s)	132, 668
BmgT120I	GGNCC	1 cut(s)	134
BmrFI	CCNGG	2 cut(s)	132, 668
BmsI	GCATC	3 cut(s)	130, 610, 755
BpuMI	CCSGG	1 cut(s)	668
BsaJI	CCNNGG	2 cut(s)	666, 741
Bsc4I	CCNNNNNNNGG	2 cut(s)	424, 593
Bse1I	ACTGG	2 cut(s)	496, 550
Bse3DI	GCAATG	1 cut(s)	602
BseBI	CCWGG	1 cut(s)	132
BseDI	CCNNGG	2 cut(s)	666, 741
BseGI	GGATG	2 cut(s)	10, 705
BseLI	CCNNNNNNNGG	2 cut(s)	424, 593
BseMI	GCAATG	1 cut(s)	602
BseNI	ACTGG	2 cut(s)	496, 550
BseXI	GCAGC	1 cut(s)	130
BsgI	GTGCAG	2 cut(s)	129, 710
BshFI	GGCC	4 cut(s)	135, 253, 549, 611
BsiSI	CCGG	1 cut(s)	668
BslI	CCNNNNNNNGG	2 cut(s)	424, 593
BsmAI	GTCTC	1 cut(s)	14
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	4 cut(s)	135, 253, 549, 611
Bsp143I	GATC	1 cut(s)	599
BspANI	GGCC	4 cut(s)	135, 253, 549, 611
BspMI	ACCTGC	2 cut(s)	331, 595
BspPI	GGATC	1 cut(s)	607
BsrDI	GCAATG	1 cut(s)	602
BsrI	ACTGG	2 cut(s)	496, 550
BssECI	CCNNGG	2 cut(s)	666, 741
BssMI	GATC	1 cut(s)	599
BssT1I	CCWWGG	1 cut(s)	741
Bst2UI	CCWGG	1 cut(s)	132
Bst4CI	ACNGT	2 cut(s)	535, 581
BstC8I	GCNNGC	1 cut(s)	609
BstDEI	CTNAG	2 cut(s)	210, 410
BstF5I	GGATG	2 cut(s)	10, 705
BstKTI	GATC	1 cut(s)	602
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	1 cut(s)	599
BstMWI	GCNNNNNNNGC	2 cut(s)	308, 752
BstNI	CCWGG	1 cut(s)	132
BstNSI	RCATGY	2 cut(s)	105, 123
BstSCI	CCNGG	2 cut(s)	130, 666
BstSFI	CTRYAG	1 cut(s)	84
BstV1I	GCAGC	1 cut(s)	130
BsuRI	GGCC	4 cut(s)	135, 253, 549, 611
BtsCI	GGATG	2 cut(s)	10, 705
BtsIMutI	CAGTG	1 cut(s)	577
BveI	ACCTGC	2 cut(s)	331, 595
Cac8I	GCNNGC	1 cut(s)	609
Cfr13I	GGNCC	1 cut(s)	134
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	4 cut(s)	32, 102, 120, 573
CviJI	RGCY	7 cut(s)	135, 253, 311, 409, 549, 611, 664
CviKI_1	RGCY	7 cut(s)	135, 253, 311, 409, 549, 611, 664
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	2 cut(s)	210, 410
DpnI	GATC	1 cut(s)	601
DpnII	GATC	1 cut(s)	599
Eco130I	CCWWGG	1 cut(s)	741
Eco147I	AGGCCT	1 cut(s)	253
Eco57I	CTGAAG	2 cut(s)	240, 732
EcoRII	CCWGG	1 cut(s)	130
EcoT14I	CCWWGG	1 cut(s)	741
ErhI	CCWWGG	1 cut(s)	741
FaeI	CATG	4 cut(s)	35, 105, 123, 576
FaiI	YATR	8 cut(s)	33, 103, 121, 150, 486, 500, 574, 731
FalI	AAGNNNNNCTT	2 cut(s)	238, 270
FatI	CATG	4 cut(s)	31, 101, 119, 572
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	2 cut(s)	17, 712
Fsp4HI	GCNGC	1 cut(s)	144
GluI	GCNGC	1 cut(s)	144
HaeIII	GGCC	4 cut(s)	135, 253, 549, 611
HapII	CCGG	1 cut(s)	668
Hin1II	CATG	4 cut(s)	35, 105, 123, 576
HpaII	CCGG	1 cut(s)	668
HphI	GGTGA	1 cut(s)	23
Hpy166II	GTNNAC	2 cut(s)	521, 584
Hpy188I	TCNGA	2 cut(s)	99, 193
Hpy188III	TCNNGA	3 cut(s)	258, 331, 389
Hpy8I	GTNNAC	2 cut(s)	521, 584
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	8 cut(s)	116, 240, 264, 292, 314, 373, 503, 560
HpyCH4III	ACNGT	2 cut(s)	535, 581
HpyCH4V	TGCA	6 cut(s)	123, 146, 340, 526, 607, 727
HpyF10VI	GCNNNNNNNGC	2 cut(s)	308, 752
HpyF3I	CTNAG	2 cut(s)	210, 410
Hsp92II	CATG	4 cut(s)	35, 105, 123, 576
Kzo9I	GATC	1 cut(s)	599
Lsp1109I	GCAGC	1 cut(s)	130
LweI	GCATC	3 cut(s)	130, 610, 755
MalI	GATC	1 cut(s)	601
MboI	GATC	1 cut(s)	599
MboII	GAAGA	2 cut(s)	176, 255
MluCI	AATT	6 cut(s)	52, 64, 335, 368, 655, 672
MmeI	TCCRAC	2 cut(s)	171, 517
MnlI	CCTC	5 cut(s)	67, 187, 243, 428, 644
MspI	CCGG	1 cut(s)	668
MspR9I	CCNGG	2 cut(s)	132, 668
Mva1269I	GAATGC	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	308, 752
NciI	CCSGG	1 cut(s)	668
NdeII	GATC	1 cut(s)	599
NlaIII	CATG	4 cut(s)	35, 105, 123, 576
NmeAIII	GCCGAG	1 cut(s)	707
NspI	RCATGY	2 cut(s)	105, 123
PaqCI	CACCTGC	2 cut(s)	331, 595
PceI	AGGCCT	1 cut(s)	253
PctI	GAATGC	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	145
PsiI	TTATAA	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	130
PspPI	GGNCC	1 cut(s)	134
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	1 cut(s)	599
Sau96I	GGNCC	1 cut(s)	134
ScrFI	CCNGG	2 cut(s)	132, 668
SetI	ASST	6 cut(s)	133, 313, 345, 420, 589, 743
SfaNI	GCATC	3 cut(s)	130, 610, 755
SfcI	CTRYAG	1 cut(s)	84
Sse9I	AATT	6 cut(s)	52, 64, 335, 368, 655, 672
SseBI	AGGCCT	1 cut(s)	253
StuI	AGGCCT	1 cut(s)	253
StyD4I	CCNGG	2 cut(s)	130, 666
StyI	CCWWGG	1 cut(s)	741
TaaI	ACNGT	2 cut(s)	535, 581
TasI	AATT	6 cut(s)	52, 64, 335, 368, 655, 672
TatI	WGTACW	1 cut(s)	282
TscAI	CASTG	1 cut(s)	584
TseI	GCWGC	1 cut(s)	143
TspGWI	ACGGA	1 cut(s)	177
TspRI	CASTG	1 cut(s)	584
XceI	RCATGY	2 cut(s)	105, 123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.