Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008376

Physical Location & Seq

Genomic Coordinates Forward (+)

2120353 .. 2121550

Gene Structure 1198 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1025300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGATGATGGGGAGGTGGTTGCTTCAGACCATGCTTTGCTTCCAAATCCCAATTGCTCTAGCAATTTTCCTGGTTCAACTTCTGTAGATACATTTTTTGATGAAATTCTGAACACGCAGACATGCACTCACACTCACACTTGCAACCCTCCTGGCCCTGATGCTGCACATACACATACTTGCTACCACACACACACTCAAGTTCTTTCGTCCGAAGATGACGATGATGATAGCAAGAATAAAGAGCGTTCCATCCTGAAACCACGAAGAAGAAGGCCTCTGGGCAATAGAGAAGCCGTTCGAAAGTACAGGGACAAAAAGAAGGCGCACGCAGCTTATTTAGAAGAGGAAATCAGGAAATTGCAGGTGTTGAACCAGCAACTTGTTGGGAAAATACAGGCACAGGCAACTCTTGAAGCTGAGTTTTTAAAGCTGAAAGGCCTTGTGCTGGAACTTAGACGAATGATTGATAATGAGTTGGGTGCTTTCCCCTTCCAAAAACAATTGAACAGTAATACTTATTTCAAGGAAAGCCAGTGTAATCTGCAGTCTAGTGTTGGGGCAATGGGACTTCATTGTCAAACCGATTTACCATGCTCCTGTCCACCTGTTGGGTCATCCGTCCAGGCGGGTATCGGTGCAAGGCAAAAAACGATGGTGTCATCAGGAAGAAATTGTCAGCCTGCAGTAATTGATTGCCGAGCAAATACAAATGAGGCATCAACACAAGCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

246

Amino Acids

27.08

Weight (kDa)

6.5

Isoelectric Point (pI)

39.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	89 - 134	1.9e-11	Basic region leucine zipper
bZIP_1	PF00170	89 - 134	3.4e-06	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51960 AT3G51960 AT3G51960
fragaria_vesca	FvH4_7g01951
malus_domestica	MD02G1298400.v1.1 MD07G1025300.v1.1
prunus_persica	Prupe.2G025800_v2.0.a1 Prupe.2G025800_v2.0.a1 Prupe.2G025800_v2.0.a1
pyrus_communis	pycom02g25130 pycom07g01960
rosa_chinensis	RchiOBHm_Chr1g0318951
rosa_laevigata	RLG00000030515
rosa_multiflora	Rmu_sc0006626.1_g000014
rosa_roxburghii	Rroxscaffold_4G00328750
rosa_rugosa	Rorug01G0025700 Rorug01G0025800 Rorug01G0025900
rosa_samantha	Rh1AG037500 Rh1BG033900 Rh1CG036700 Rh1DG033600
rosa_wichuraiana	Rw1G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	355
AasI	GACNNNNNNGTC	1 cut(s)	576
Acc36I	ACCTGC	1 cut(s)	355
AccB7I	CCANNNNNTGG	1 cut(s)	611
AciI	CCGC	1 cut(s)	629
AcsI	RAATTY	1 cut(s)	105
AcuI	CTGAAG	1 cut(s)	9
AfaI	GTAC	1 cut(s)	308
AfiI	CCNNNNNNNGG	2 cut(s)	448, 611
AgsI	TTSAA	5 cut(s)	78, 373, 416, 508, 526
AjnI	CCWGG	3 cut(s)	70, 151, 624
AluBI	AGCT	4 cut(s)	335, 419, 433, 731
AluI	AGCT	4 cut(s)	335, 419, 433, 731
AoxI	GGCC	3 cut(s)	154, 275, 439
ApeKI	GCWGC	2 cut(s)	164, 332
ApoI	RAATTY	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	1 cut(s)	155
AsuII	TTCGAA	1 cut(s)	301
BbvI	GCAGC	2 cut(s)	151, 344
BccI	CCATC	3 cut(s)	2, 260, 649
BceAI	ACGGC	1 cut(s)	281
BciT130I	CCWGG	3 cut(s)	72, 153, 626
BfaI	CTAG	2 cut(s)	60, 552
BfmI	CTRYAG	3 cut(s)	84, 545, 684
BfuAI	ACCTGC	1 cut(s)	355
BisI	GCNGC	2 cut(s)	165, 333
BlsI	GCNGC	2 cut(s)	166, 334
Bme1390I	CCNGG	3 cut(s)	72, 153, 626
BmgT120I	GGNCC	1 cut(s)	155
BmrFI	CCNGG	3 cut(s)	72, 153, 626
BmsI	GCATC	2 cut(s)	151, 728
Bpu14I	TTCGAA	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	183
Bsc4I	CCNNNNNNNGG	2 cut(s)	448, 611
Bse1I	ACTGG	1 cut(s)	535
Bse3DI	GCAATG	1 cut(s)	570
BseBI	CCWGG	3 cut(s)	72, 153, 626
BseGI	GGATG	3 cut(s)	10, 252, 617
BseLI	CCNNNNNNNGG	2 cut(s)	448, 611
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	2 cut(s)	411, 723
BseNI	ACTGG	1 cut(s)	535
BseXI	GCAGC	2 cut(s)	151, 344
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	156, 277, 441
BslFI	GGGAC	2 cut(s)	326, 582
BslI	CCNNNNNNNGG	2 cut(s)	448, 611
BsmFI	GGGAC	2 cut(s)	326, 582
BsnI	GGCC	3 cut(s)	156, 277, 441
Bsp119I	TTCGAA	1 cut(s)	301
BspACI	CCGC	1 cut(s)	629
BspANI	GGCC	3 cut(s)	156, 277, 441
BspCNI	CTCAG	2 cut(s)	412, 724
BspMAI	CTGCAG	2 cut(s)	549, 688
BspMI	ACCTGC	1 cut(s)	355
BspT104I	TTCGAA	1 cut(s)	301
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	535
Bst2UI	CCWGG	3 cut(s)	72, 153, 626
Bst4CI	ACNGT	1 cut(s)	512
Bst6I	CTCTTC	1 cut(s)	339
BstBI	TTCGAA	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	330, 684
BstDEI	CTNAG	3 cut(s)	420, 455, 732
BstF5I	GGATG	3 cut(s)	10, 252, 617
BstHHI	GCGC	1 cut(s)	328
BstMWI	GCNNNNNNNGC	1 cut(s)	332
BstNI	CCWGG	3 cut(s)	72, 153, 626
BstNSI	RCATGY	1 cut(s)	126
BstSCI	CCNGG	3 cut(s)	70, 151, 624
BstSFI	CTRYAG	3 cut(s)	84, 545, 684
BstV1I	GCAGC	2 cut(s)	151, 344
BsuRI	GGCC	3 cut(s)	156, 277, 441
BtsCI	GGATG	3 cut(s)	10, 252, 617
BtsIMutI	CAGTG	1 cut(s)	542
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	2 cut(s)	330, 684
CfoI	GCGC	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	307
CviAII	CATG	3 cut(s)	32, 123, 594
CviQI	GTAC	1 cut(s)	307
DdeI	CTNAG	3 cut(s)	420, 455, 732
DraI	TTTAAA	1 cut(s)	429
DrdI	GACNNNNNNGTC	1 cut(s)	576
DseDI	GACNNNNNNGTC	1 cut(s)	576
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco147I	AGGCCT	2 cut(s)	277, 441
Eco57I	CTGAAG	1 cut(s)	9
EcoRII	CCWGG	3 cut(s)	70, 151, 624
FaeI	CATG	3 cut(s)	35, 126, 597
FaiI	YATR	5 cut(s)	33, 124, 171, 177, 595
FaqI	GGGAC	2 cut(s)	326, 582
FatI	CATG	3 cut(s)	31, 122, 593
FauI	CCCGC	1 cut(s)	622
Fnu4HI	GCNGC	2 cut(s)	165, 333
FokI	GGATG	3 cut(s)	17, 239, 604
Fsp4HI	GCNGC	2 cut(s)	165, 333
FspBI	CTAG	2 cut(s)	60, 552
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	2 cut(s)	165, 333
HaeIII	GGCC	3 cut(s)	156, 277, 441
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	3 cut(s)	35, 126, 597
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
Hpy166II	GTNNAC	1 cut(s)	605
Hpy188I	TCNGA	3 cut(s)	28, 111, 214
Hpy188III	TCNNGA	4 cut(s)	256, 355, 413, 666
Hpy8I	GTNNAC	1 cut(s)	605
HpyAV	CCTTC	3 cut(s)	267, 316, 502
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4V	TGCA	7 cut(s)	126, 144, 167, 364, 547, 641, 686
HpyF10VI	GCNNNNNNNGC	1 cut(s)	332
HpyF3I	CTNAG	3 cut(s)	420, 455, 732
Hsp92II	CATG	3 cut(s)	35, 126, 597
HspAI	GCGC	1 cut(s)	326
LmnI	GCTCC	1 cut(s)	602
Lsp1109I	GCAGC	2 cut(s)	151, 344
LweI	GCATC	2 cut(s)	151, 728
MaeI	CTAG	2 cut(s)	60, 552
MboII	GAAGA	5 cut(s)	227, 279, 282, 356, 681
MfeI	CAATTG	2 cut(s)	52, 503
MluCI	AATT	7 cut(s)	52, 64, 105, 359, 503, 673, 690
MnlI	CCTC	5 cut(s)	7, 159, 288, 340, 709
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	1 cut(s)	428
MspR9I	CCNGG	3 cut(s)	72, 153, 626
MunI	CAATTG	2 cut(s)	52, 503
MvaI	CCWGG	3 cut(s)	72, 153, 626
MwoI	GCNNNNNNNGC	1 cut(s)	332
NlaIII	CATG	3 cut(s)	35, 126, 597
NmeAIII	GCCGAG	1 cut(s)	725
NspI	RCATGY	1 cut(s)	126
NspV	TTCGAA	1 cut(s)	301
PaqCI	CACCTGC	1 cut(s)	355
PceI	AGGCCT	2 cut(s)	277, 441
PdmI	GAANNNNTTC	1 cut(s)	297
PflMI	CCANNNNNTGG	1 cut(s)	611
PkrI	GCNGC	2 cut(s)	166, 334
Psp6I	CCWGG	3 cut(s)	70, 151, 624
PspGI	CCWGG	3 cut(s)	70, 151, 624
PspPI	GGNCC	1 cut(s)	155
PstI	CTGCAG	2 cut(s)	549, 688
RsaI	GTAC	1 cut(s)	308
RsaNI	GTAC	1 cut(s)	307
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	2 cut(s)	165, 333
Sau96I	GGNCC	1 cut(s)	155
ScrFI	CCNGG	3 cut(s)	72, 153, 626
SetI	ASST	7 cut(s)	18, 337, 369, 421, 435, 610, 733
SfaNI	GCATC	2 cut(s)	151, 728
SfcI	CTRYAG	3 cut(s)	84, 545, 684
SfuI	TTCGAA	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	198
SmoI	CTYRAG	1 cut(s)	198
Sse9I	AATT	7 cut(s)	52, 64, 105, 359, 503, 673, 690
SseBI	AGGCCT	2 cut(s)	277, 441
SsiI	CCGC	1 cut(s)	629
SspMI	CTAG	2 cut(s)	60, 552
StuI	AGGCCT	2 cut(s)	277, 441
StyD4I	CCNGG	3 cut(s)	70, 151, 624
TaaI	ACNGT	1 cut(s)	512
TaqI	TCGA	1 cut(s)	301
TasI	AATT	7 cut(s)	52, 64, 105, 359, 503, 673, 690
TatI	WGTACW	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	1 cut(s)	542
TseI	GCWGC	2 cut(s)	164, 332
TspDTI	ATGAA	2 cut(s)	117, 563
TspGWI	ACGGA	1 cut(s)	610
TspRI	CASTG	1 cut(s)	542
Van91I	CCANNNNNTGG	1 cut(s)	611
XapI	RAATTY	1 cut(s)	105
XceI	RCATGY	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	383
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	2 cut(s)	60, 552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.