Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008376

Physical Location & Seq

Genomic Coordinates Forward (+)

1547516 .. 1548256

Gene Structure 741 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g01960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGATGATGGGGAGGTGGTTGCTTCAGACCATGCTTTGCTTCCAAATCCCAATTGCTCTAGCAATTTTCCAGGTTCAACTTCTGTAGATACATTTTTTGATGAAATTCTGAACACGCAGACATGCACTCACACTCACACTTGCAACCCTCCTGGCCCTGATGCTGCACATACACATACTTGCTACCACACACACACCCAAGTTCTTTCGTCCGAAGATGATGATGATGATGATAGCAAGAATAAAGAGCGTTCCATCCCGAAACCACAAAGAAGAAGGCCTCTGGGCAATAGAGAAGCCGTTCGAAAGTACAGGGACAAAAAGAAGGCGCACACAGCTTATTTAGAAGAGGAAATCAGGAAATTGCAGGTGTTGAACCAGCAACTTGTTGGGAAAATACAGGCACAGGCAACTCTTGAAGCTGAGTTTTTAAGGCTGAAAGGCCTTGTGCTGGAACTTAGAGGAAAGATTGATAATGAGTTGGGTGGTTTCCCCTTCCAAAAACAATGTAACGGTAATACTTACTTCAAGGAAAGTCAGTGTAATCTGCAGTCTAGTGCTGGGGCAATGGGACTTCATTGTCAAACCGATTTACCATGCTCCTGTCCACCTGTTGGGTCATCCGTCCAGGTTAGTATCGGTGCAAGGGAAAAAACGATGGTGTCATCAGGAGGAAATCGTCAGCCTGCAGTAATTGATTGCCGAGCAAATACAAATAAGGAGTCGACACAAGCTGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

247

Amino Acids

27.1

Weight (kDa)

6.14

Isoelectric Point (pI)

37.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	91 - 135	1.1e-11	Basic region leucine zipper
bZIP_1	PF00170	91 - 134	2.7e-06	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51960 AT3G51960 AT3G51960
fragaria_vesca	FvH4_7g01951
malus_domestica	MD02G1298400.v1.1 MD07G1025300.v1.1
prunus_persica	Prupe.2G025800_v2.0.a1 Prupe.2G025800_v2.0.a1 Prupe.2G025800_v2.0.a1
pyrus_communis	pycom02g25130 pycom07g01960
rosa_chinensis	RchiOBHm_Chr1g0318951
rosa_laevigata	RLG00000030515
rosa_multiflora	Rmu_sc0006626.1_g000014
rosa_roxburghii	Rroxscaffold_4G00328750
rosa_rugosa	Rorug01G0025700 Rorug01G0025800 Rorug01G0025900
rosa_samantha	Rh1AG037500 Rh1BG033900 Rh1CG036700 Rh1DG033600
rosa_wichuraiana	Rw1G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	358
AasI	GACNNNNNNGTC	1 cut(s)	579
Acc36I	ACCTGC	1 cut(s)	358
AccB7I	CCANNNNNTGG	1 cut(s)	614
AccI	GTMKAC	1 cut(s)	725
AcsI	RAATTY	1 cut(s)	105
AcuI	CTGAAG	1 cut(s)	9
AfaI	GTAC	1 cut(s)	311
AfiI	CCNNNNNNNGG	2 cut(s)	451, 614
AgsI	TTSAA	4 cut(s)	78, 376, 419, 529
AjnI	CCWGG	3 cut(s)	70, 151, 627
AluBI	AGCT	3 cut(s)	338, 422, 734
AluI	AGCT	3 cut(s)	338, 422, 734
AoxI	GGCC	3 cut(s)	154, 278, 442
ApeKI	GCWGC	1 cut(s)	164
ApoI	RAATTY	1 cut(s)	105
ArsI	GACNNNNNNTTYG	2 cut(s)	707, 739
Asp700I	GAANNNNTTC	1 cut(s)	300
AspLEI	GCGC	1 cut(s)	331
AspS9I	GGNCC	1 cut(s)	155
AsuII	TTCGAA	1 cut(s)	304
BbvI	GCAGC	1 cut(s)	151
BccI	CCATC	3 cut(s)	2, 263, 652
BceAI	ACGGC	1 cut(s)	284
BciT130I	CCWGG	3 cut(s)	72, 153, 629
BfaI	CTAG	2 cut(s)	60, 555
BfmI	CTRYAG	3 cut(s)	84, 548, 687
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	1 cut(s)	165
BlsI	GCNGC	1 cut(s)	166
Bme1390I	CCNGG	3 cut(s)	72, 153, 629
BmgT120I	GGNCC	1 cut(s)	155
BmrFI	CCNGG	3 cut(s)	72, 153, 629
BmsI	GCATC	1 cut(s)	151
Bpu14I	TTCGAA	1 cut(s)	304
Bsc4I	CCNNNNNNNGG	2 cut(s)	451, 614
Bse3DI	GCAATG	1 cut(s)	573
BseBI	CCWGG	3 cut(s)	72, 153, 629
BseGI	GGATG	3 cut(s)	10, 255, 620
BseLI	CCNNNNNNNGG	2 cut(s)	451, 614
BseMI	GCAATG	1 cut(s)	573
BseMII	CTCAG	2 cut(s)	414, 726
BseXI	GCAGC	1 cut(s)	151
BseYI	CCCAGC	1 cut(s)	560
BsgI	GTGCAG	1 cut(s)	150
BshFI	GGCC	3 cut(s)	156, 280, 444
BslFI	GGGAC	2 cut(s)	329, 585
BslI	CCNNNNNNNGG	2 cut(s)	451, 614
BsmFI	GGGAC	2 cut(s)	329, 585
BsnI	GGCC	3 cut(s)	156, 280, 444
Bsp119I	TTCGAA	1 cut(s)	304
BspANI	GGCC	3 cut(s)	156, 280, 444
BspCNI	CTCAG	2 cut(s)	415, 727
BspMAI	CTGCAG	2 cut(s)	552, 691
BspMI	ACCTGC	1 cut(s)	358
BspT104I	TTCGAA	1 cut(s)	304
BsrDI	GCAATG	1 cut(s)	573
Bst2UI	CCWGG	3 cut(s)	72, 153, 629
Bst4CI	ACNGT	1 cut(s)	515
Bst6I	CTCTTC	1 cut(s)	342
BstBI	TTCGAA	1 cut(s)	304
BstC8I	GCNNGC	1 cut(s)	687
BstDEI	CTNAG	3 cut(s)	423, 458, 735
BstF5I	GGATG	3 cut(s)	10, 255, 620
BstHHI	GCGC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	1 cut(s)	335
BstNI	CCWGG	3 cut(s)	72, 153, 629
BstNSI	RCATGY	1 cut(s)	126
BstSCI	CCNGG	3 cut(s)	70, 151, 627
BstSFI	CTRYAG	3 cut(s)	84, 548, 687
BstV1I	GCAGC	1 cut(s)	151
BsuRI	GGCC	3 cut(s)	156, 280, 444
BtsCI	GGATG	3 cut(s)	10, 255, 620
BtsIMutI	CAGTG	1 cut(s)	545
BveI	ACCTGC	1 cut(s)	358
Cac8I	GCNNGC	1 cut(s)	687
CfoI	GCGC	1 cut(s)	331
Cfr13I	GGNCC	1 cut(s)	155
Csp6I	GTAC	1 cut(s)	310
CviAII	CATG	3 cut(s)	32, 123, 597
CviJI	RGCY	9 cut(s)	156, 280, 299, 338, 422, 436, 444, 685, 734
CviKI_1	RGCY	9 cut(s)	156, 280, 299, 338, 422, 436, 444, 685, 734
CviQI	GTAC	1 cut(s)	310
DdeI	CTNAG	3 cut(s)	423, 458, 735
DrdI	GACNNNNNNGTC	1 cut(s)	579
DseDI	GACNNNNNNGTC	1 cut(s)	579
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco147I	AGGCCT	2 cut(s)	280, 444
Eco57I	CTGAAG	1 cut(s)	9
EcoRII	CCWGG	3 cut(s)	70, 151, 627
FaeI	CATG	3 cut(s)	35, 126, 600
FaiI	YATR	5 cut(s)	33, 124, 171, 177, 598
FaqI	GGGAC	2 cut(s)	329, 585
FatI	CATG	3 cut(s)	31, 122, 596
FblI	GTMKAC	1 cut(s)	725
Fnu4HI	GCNGC	1 cut(s)	165
FokI	GGATG	3 cut(s)	17, 242, 607
Fsp4HI	GCNGC	1 cut(s)	165
FspBI	CTAG	2 cut(s)	60, 555
GlaI	GCGC	1 cut(s)	330
GluI	GCNGC	1 cut(s)	165
GsaI	CCCAGC	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	156, 280, 444
HhaI	GCGC	1 cut(s)	331
Hin1II	CATG	3 cut(s)	35, 126, 600
Hin6I	GCGC	1 cut(s)	329
HinP1I	GCGC	1 cut(s)	329
HincII	GTYRAC	1 cut(s)	726
HindII	GTYRAC	1 cut(s)	726
HinfI	GANTC	1 cut(s)	722
Hpy166II	GTNNAC	2 cut(s)	608, 726
Hpy188I	TCNGA	3 cut(s)	28, 111, 214
Hpy188III	TCNNGA	4 cut(s)	259, 358, 416, 669
Hpy8I	GTNNAC	2 cut(s)	608, 726
HpyAV	CCTTC	3 cut(s)	270, 319, 505
HpyCH4III	ACNGT	1 cut(s)	515
HpyCH4V	TGCA	7 cut(s)	126, 144, 167, 367, 550, 644, 689
HpyF10VI	GCNNNNNNNGC	1 cut(s)	335
HpyF3I	CTNAG	3 cut(s)	423, 458, 735
Hsp92II	CATG	3 cut(s)	35, 126, 600
HspAI	GCGC	1 cut(s)	329
LmnI	GCTCC	1 cut(s)	605
Lsp1109I	GCAGC	1 cut(s)	151
LweI	GCATC	1 cut(s)	151
MaeI	CTAG	2 cut(s)	60, 555
MaeIII	GTNAC	1 cut(s)	509
MboII	GAAGA	3 cut(s)	227, 285, 359
MfeI	CAATTG	1 cut(s)	52
MluCI	AATT	5 cut(s)	52, 64, 105, 362, 693
MlyI	GAGTC	1 cut(s)	731
MnlI	CCTC	6 cut(s)	7, 159, 291, 343, 455, 665
MroXI	GAANNNNTTC	1 cut(s)	300
MseI	TTAA	1 cut(s)	431
MspR9I	CCNGG	3 cut(s)	72, 153, 629
MunI	CAATTG	1 cut(s)	52
MvaI	CCWGG	3 cut(s)	72, 153, 629
MwoI	GCNNNNNNNGC	1 cut(s)	335
NlaIII	CATG	3 cut(s)	35, 126, 600
NmeAIII	GCCGAG	1 cut(s)	728
NspI	RCATGY	1 cut(s)	126
NspV	TTCGAA	1 cut(s)	304
PaqCI	CACCTGC	1 cut(s)	358
PceI	AGGCCT	2 cut(s)	280, 444
PdmI	GAANNNNTTC	1 cut(s)	300
PflMI	CCANNNNNTGG	1 cut(s)	614
PkrI	GCNGC	1 cut(s)	166
PleI	GAGTC	1 cut(s)	730
PpsI	GAGTC	1 cut(s)	730
Psp6I	CCWGG	3 cut(s)	70, 151, 627
PspFI	CCCAGC	1 cut(s)	560
PspGI	CCWGG	3 cut(s)	70, 151, 627
PspPI	GGNCC	1 cut(s)	155
PstI	CTGCAG	2 cut(s)	552, 691
RsaI	GTAC	1 cut(s)	311
RsaNI	GTAC	1 cut(s)	310
SalI	GTCGAC	1 cut(s)	724
SaqAI	TTAA	1 cut(s)	431
SatI	GCNGC	1 cut(s)	165
Sau96I	GGNCC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	731
ScrFI	CCNGG	3 cut(s)	72, 153, 629
SetI	ASST	8 cut(s)	18, 76, 340, 372, 424, 613, 633, 736
SfaNI	GCATC	1 cut(s)	151
SfcI	CTRYAG	3 cut(s)	84, 548, 687
SfuI	TTCGAA	1 cut(s)	304
Sse9I	AATT	5 cut(s)	52, 64, 105, 362, 693
SseBI	AGGCCT	2 cut(s)	280, 444
SspMI	CTAG	2 cut(s)	60, 555
StuI	AGGCCT	2 cut(s)	280, 444
StyD4I	CCNGG	3 cut(s)	70, 151, 627
TaaI	ACNGT	1 cut(s)	515
TaqI	TCGA	2 cut(s)	304, 725
TasI	AATT	5 cut(s)	52, 64, 105, 362, 693
TatI	WGTACW	1 cut(s)	309
Tru1I	TTAA	1 cut(s)	431
Tru9I	TTAA	1 cut(s)	431
TscAI	CASTG	1 cut(s)	545
TseI	GCWGC	1 cut(s)	164
TspDTI	ATGAA	2 cut(s)	117, 566
TspGWI	ACGGA	1 cut(s)	613
TspRI	CASTG	1 cut(s)	545
Van91I	CCANNNNNTGG	1 cut(s)	614
XapI	RAATTY	1 cut(s)	105
XceI	RCATGY	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	725
XmnI	GAANNNNTTC	1 cut(s)	300
XspI	CTAG	2 cut(s)	60, 555

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.