Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008376

Physical Location & Seq

Genomic Coordinates Forward (+)

4313415 .. 4314352

Gene Structure 938 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0025700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGGACAATGTTAACCTTTTGACAAGTACAGATGCAGATGGTGGACTGCCGGCTTCTCCTTCTATTAGATTTAACAAAGAAGGAATACTGTTAGCTGTCTCAACAAATGACAATGGTATTAAAATCCTAGCAAATTCAGATGGAATTAGGTTGCTGAGAACAGTGGATGCTTCCAGAGCTGCTTCTGTGGCTGTTGTGAAGGCCTCAGCAATAGGAACATTTGGATCGTCTAACATTACTGTTGGAACAGGCATTGGAGATCGAGCAGCTCCAGTGCCAGCCATGGTTGGACTGGTCGAGTTAAATGGAGCACTTGAAACCCTGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

109

Amino Acids

10.95

Weight (kDa)

4.81

Isoelectric Point (pI)

27.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51960 AT3G51960 AT3G51960
fragaria_vesca	FvH4_7g01951
malus_domestica	MD02G1298400.v1.1 MD07G1025300.v1.1
prunus_persica	Prupe.2G025800_v2.0.a1 Prupe.2G025800_v2.0.a1 Prupe.2G025800_v2.0.a1
pyrus_communis	pycom02g25130 pycom07g01960
rosa_chinensis	RchiOBHm_Chr1g0318951
rosa_laevigata	RLG00000030515
rosa_multiflora	Rmu_sc0006626.1_g000014
rosa_roxburghii	Rroxscaffold_4G00328750
rosa_rugosa	Rorug01G0025700 Rorug01G0025800 Rorug01G0025900
rosa_samantha	Rh1AG037500 Rh1BG033900 Rh1CG036700 Rh1DG033600
rosa_wichuraiana	Rw1G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	232
AcsI	RAATTY	1 cut(s)	133
AfaI	GTAC	1 cut(s)	28
AgsI	TTSAA	1 cut(s)	317
AluBI	AGCT	3 cut(s)	95, 179, 269
AluI	AGCT	3 cut(s)	95, 179, 269
Alw21I	GWGCWC	1 cut(s)	313
Alw26I	GTCTC	1 cut(s)	103
AlwI	GGATC	1 cut(s)	232
AoxI	GGCC	1 cut(s)	201
ApeKI	GCWGC	2 cut(s)	179, 266
ApoI	RAATTY	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	313
BbvCI	CCTCAGC	1 cut(s)	205
BbvI	GCAGC	2 cut(s)	166, 278
BccI	CCATC	2 cut(s)	32, 134
BcoDI	GTCTC	1 cut(s)	103
BfaI	CTAG	1 cut(s)	128
BisI	GCNGC	2 cut(s)	180, 267
BlsI	GCNGC	2 cut(s)	181, 268
BmsI	GCATC	2 cut(s)	22, 157
BpmI	CTGGAG	1 cut(s)	255
Bpu10I	CCTNAGC	1 cut(s)	205
BsaJI	CCNNGG	1 cut(s)	282
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	272, 297
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	172
BseMII	CTCAG	2 cut(s)	146, 219
BseNI	ACTGG	2 cut(s)	272, 297
BseXI	GCAGC	2 cut(s)	166, 278
BshFI	GGCC	1 cut(s)	203
BsiHKAI	GWGCWC	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	50
BsmAI	GTCTC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	203
Bsp1286I	GDGCHC	1 cut(s)	313
Bsp143I	GATC	2 cut(s)	224, 259
Bsp19I	CCATGG	1 cut(s)	282
BspANI	GGCC	1 cut(s)	203
BspCNI	CTCAG	2 cut(s)	147, 218
BspPI	GGATC	1 cut(s)	232
BsrFI	RCCGGY	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	272, 297
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	2 cut(s)	224, 259
BssT1I	CCWWGG	1 cut(s)	282
Bst4CI	ACNGT	3 cut(s)	90, 163, 241
BstC8I	GCNNGC	2 cut(s)	51, 279
BstDEI	CTNAG	2 cut(s)	155, 205
BstDSI	CCRYGG	1 cut(s)	282
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	2 cut(s)	227, 262
BstMAI	GTCTC	1 cut(s)	103
BstMBI	GATC	2 cut(s)	224, 259
BstMWI	GCNNNNNNNGC	2 cut(s)	176, 188
BstV1I	GCAGC	2 cut(s)	166, 278
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	1 cut(s)	282
BtsCI	GGATG	1 cut(s)	172
BtsIMutI	CAGTG	2 cut(s)	168, 279
Cac8I	GCNNGC	2 cut(s)	51, 279
Cfr10I	RCCGGY	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	27
CviAII	CATG	1 cut(s)	283
CviJI	RGCY	7 cut(s)	53, 95, 179, 191, 203, 269, 281
CviKI_1	RGCY	7 cut(s)	53, 95, 179, 191, 203, 269, 281
CviQI	GTAC	1 cut(s)	27
DdeI	CTNAG	2 cut(s)	155, 205
DpnI	GATC	2 cut(s)	226, 261
DpnII	GATC	2 cut(s)	224, 259
Eco130I	CCWWGG	1 cut(s)	282
Eco147I	AGGCCT	1 cut(s)	203
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	1 cut(s)	286
FaiI	YATR	1 cut(s)	284
FatI	CATG	1 cut(s)	282
Fnu4HI	GCNGC	2 cut(s)	180, 267
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	2 cut(s)	180, 267
FspBI	CTAG	1 cut(s)	128
GluI	GCNGC	2 cut(s)	180, 267
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	50
Hin1II	CATG	1 cut(s)	286
HincII	GTYRAC	1 cut(s)	13
HindII	GTYRAC	1 cut(s)	13
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	1 cut(s)	50
Hpy166II	GTNNAC	2 cut(s)	13, 44
Hpy188I	TCNGA	1 cut(s)	139
Hpy188III	TCNNGA	1 cut(s)	174
Hpy8I	GTNNAC	2 cut(s)	13, 44
HpyAV	CCTTC	3 cut(s)	69, 74, 193
HpyCH4III	ACNGT	3 cut(s)	90, 163, 241
HpyCH4V	TGCA	1 cut(s)	35
HpyF10VI	GCNNNNNNNGC	2 cut(s)	176, 188
HpyF3I	CTNAG	2 cut(s)	155, 205
Hsp92II	CATG	1 cut(s)	286
KroI	GCCGGC	1 cut(s)	49
KroNI	GCCGGC	1 cut(s)	51
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	2 cut(s)	224, 259
LmnI	GCTCC	2 cut(s)	274, 308
LpnPI	CCDG	6 cut(s)	63, 187, 234, 278, 285, 291
Lsp1109I	GCAGC	2 cut(s)	166, 278
LweI	GCATC	2 cut(s)	22, 157
MaeI	CTAG	1 cut(s)	128
MalI	GATC	2 cut(s)	226, 261
MboI	GATC	2 cut(s)	224, 259
MhlI	GDGCHC	1 cut(s)	313
MluCI	AATT	2 cut(s)	133, 144
MmeI	TCCRAC	2 cut(s)	223, 268
MnlI	CCTC	1 cut(s)	214
MroNI	GCCGGC	1 cut(s)	49
MseI	TTAA	4 cut(s)	12, 72, 120, 302
MspI	CCGG	1 cut(s)	50
MwoI	GCNNNNNNNGC	2 cut(s)	176, 188
NaeI	GCCGGC	1 cut(s)	51
NcoI	CCATGG	1 cut(s)	282
NdeII	GATC	2 cut(s)	224, 259
NgoMIV	GCCGGC	1 cut(s)	49
NlaIII	CATG	1 cut(s)	286
PceI	AGGCCT	1 cut(s)	203
PdiI	GCCGGC	1 cut(s)	51
PkrI	GCNGC	2 cut(s)	181, 268
RsaI	GTAC	1 cut(s)	28
RsaNI	GTAC	1 cut(s)	27
SaqAI	TTAA	4 cut(s)	12, 72, 120, 302
SatI	GCNGC	2 cut(s)	180, 267
Sau3AI	GATC	2 cut(s)	224, 259
SduI	GDGCHC	1 cut(s)	313
SetI	ASST	5 cut(s)	18, 97, 152, 181, 271
SfaNI	GCATC	2 cut(s)	22, 157
Sse9I	AATT	2 cut(s)	133, 144
SseBI	AGGCCT	1 cut(s)	203
SspMI	CTAG	1 cut(s)	128
StuI	AGGCCT	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	3 cut(s)	90, 163, 241
TaqI	TCGA	2 cut(s)	262, 297
TasI	AATT	2 cut(s)	133, 144
TatI	WGTACW	1 cut(s)	26
Tru1I	TTAA	4 cut(s)	12, 72, 120, 302
Tru9I	TTAA	4 cut(s)	12, 72, 120, 302
TscAI	CASTG	2 cut(s)	168, 279
TseI	GCWGC	2 cut(s)	179, 266
TspRI	CASTG	2 cut(s)	168, 279
XapI	RAATTY	1 cut(s)	133
XcmI	CCANNNNNNNNNTGG	1 cut(s)	289
XspI	CTAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.