Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0008376

Physical Location & Seq

Genomic Coordinates Forward (+)

4350497 .. 4452040

Gene Structure 101544 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0025900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 921 bp

ATGAAGGCGGTAGTGGTAACGACCCCCGGCGGACCGGAGGTCCTCCGAGTACAAGAAGTAGAAGACCCAGAAATCAAGGACGACGAGGTTCTTATCAGAGTGGAGGCCACCGCGCTGAACGGAGCCGACACTTTTCAGAGGAAGGGACTGTACCCACCACCTCCGGGGTCCAGTCACTACCTGGGCGTCGAATGTTCTGGAACCATCGAGGCCGTCGGGAAACACGTGTCAAGATGGAAAGTGGGTGATCAGGTGTGTGCTTTACTTAATGGAGGAGGGTATGCTGAGAAGGTGGCTGTTCCGGCGGGACAGGTTCTACCGGTTCCACCTGGGATTTCTTTGAAGGATGCTGCGAGCTTTCCGGAGGTGGCGTGCACTGTCTGGTCCACCATTTTTATGATGAGCCGGCTATCTTCGGGCGAAACACTTTTGGTTCATGGGGGTTCCAGCGGAATCGGTACATTTGCTATTCAGATTGCTAAATACCGGGGAGTAAGGGTATTTGTCACAGTAGGTAGTGAGGAAAAGTTAGCAGCTTGTAAGGAGCTTGGGGCTGACGTAGGTATCAATTACAAGACGGAGGACTTTGTTACACGGGTAAAGGAAGAGACAGGCGGCAAAGGTGTTGAAGTCATCTTGGATAGCATTGGGCAAGCCTATTTTAAACGTAACCTTGACAGCTTAGCTTTTGATGGGAGGCTTTTTGTCATTGGGACCCTGAGTGGCGCTGTCTCAGAAATAGATCTTCGTATGGTGCTTTCAAAGCGCCTCACCATCCAAGCGGCTGGTTTGCGATTCAGAAGTCCAGAAAACAAAGCAGTAATTGTTAGAGAGGTGGAGGAGAACGTGTGGCCTGCAATTGTGGCTGGCAAGGTGAAAACTGTTGTCTACAAGCGTTTCCCATTATCTGAGGCCGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

306

Amino Acids

32.73

Weight (kDa)

6.37

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	27 - 109	2.1e-18	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	151 - 263	8.1e-31	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	183 - 306	2.4e-14	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51960 AT3G51960 AT3G51960
fragaria_vesca	FvH4_7g01951
malus_domestica	MD02G1298400.v1.1 MD07G1025300.v1.1
prunus_persica	Prupe.2G025800_v2.0.a1 Prupe.2G025800_v2.0.a1 Prupe.2G025800_v2.0.a1
pyrus_communis	pycom02g25130 pycom07g01960
rosa_chinensis	RchiOBHm_Chr1g0318951
rosa_laevigata	RLG00000030515
rosa_multiflora	Rmu_sc0006626.1_g000014
rosa_roxburghii	Rroxscaffold_4G00328750
rosa_rugosa	Rorug01G0025700 Rorug01G0025800 Rorug01G0025900
rosa_samantha	Rh1AG037500 Rh1BG033900 Rh1CG036700 Rh1DG033600
rosa_wichuraiana	Rw1G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	888
AccII	CGCG	1 cut(s)	113
AccIII	TCCGGA	1 cut(s)	361
AciI	CCGC	8 cut(s)	8, 30, 111, 305, 450, 615, 782, 915
AcvI	CACGTG	1 cut(s)	226
AcyI	GRCGYC	1 cut(s)	186
AfaI	GTAC	3 cut(s)	51, 152, 460
AfiI	CCNNNNNNNGG	1 cut(s)	164
AflIII	ACRYGT	3 cut(s)	223, 225, 846
AgeI	ACCGGT	1 cut(s)	319
AgsI	TTSAA	3 cut(s)	343, 629, 762
AhdI	GACNNNNNGTC	1 cut(s)	38
AjnI	CCWGG	2 cut(s)	180, 328
AluBI	AGCT	5 cut(s)	357, 536, 547, 681, 686
AluI	AGCT	5 cut(s)	357, 536, 547, 681, 686
Alw21I	GWGCWC	1 cut(s)	377
Alw26I	GTCTC	2 cut(s)	602, 736
Alw44I	GTGCAC	1 cut(s)	373
Aor13HI	TCCGGA	1 cut(s)	361
AoxI	GGCC	4 cut(s)	105, 210, 851, 912
ApaLI	GTGCAC	1 cut(s)	373
ApeKI	GCWGC	2 cut(s)	350, 533
AsiGI	ACCGGT	1 cut(s)	319
AspLEI	GCGC	3 cut(s)	115, 728, 768
AspS9I	GGNCC	5 cut(s)	32, 40, 168, 384, 714
AsuC2I	CCSGG	3 cut(s)	27, 165, 488
AsuHPI	GGTGA	3 cut(s)	257, 763, 886
AvaII	GGWCC	5 cut(s)	32, 40, 168, 384, 714
BaeGI	GKGCMC	1 cut(s)	377
BaeI	ACNNNNGTAYC	2 cut(s)	547, 580
BarI	GAAGNNNNNNTAC	2 cut(s)	134, 166
BbrPI	CACGTG	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	1 cut(s)	377
BbvI	GCAGC	2 cut(s)	337, 545
BccI	CCATC	4 cut(s)	212, 228, 686, 782
BceAI	ACGGC	1 cut(s)	197
BciT130I	CCWGG	2 cut(s)	182, 330
BclI	TGATCA	1 cut(s)	247
BcnI	CCSGG	3 cut(s)	27, 165, 488
BcoDI	GTCTC	2 cut(s)	602, 736
BfoI	RGCGCY	2 cut(s)	729, 769
BglII	AGATCT	1 cut(s)	742
BisI	GCNGC	5 cut(s)	351, 534, 616, 783, 915
BlpI	GCTNAGC	1 cut(s)	682
BlsI	GCNGC	5 cut(s)	352, 535, 617, 784, 916
Bme1390I	CCNGG	5 cut(s)	27, 165, 182, 330, 488
Bme18I	GGWCC	5 cut(s)	32, 40, 168, 384, 714
BmeRI	GACNNNNNGTC	1 cut(s)	38
BmgT120I	GGNCC	5 cut(s)	32, 40, 168, 384, 714
BmiI	GGNNCC	7 cut(s)	124, 169, 202, 324, 445, 715, 716
BmrFI	CCNGG	5 cut(s)	27, 165, 182, 330, 488
BmsI	GCATC	1 cut(s)	337
BpiI	GAAGAC	1 cut(s)	69
Bpu1102I	GCTNAGC	1 cut(s)	682
BpuMI	CCSGG	3 cut(s)	27, 165, 488
BsaAI	YACGTR	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	186
BsaJI	CCNNGG	5 cut(s)	25, 164, 181, 329, 487
BsaWI	WCCGGW	3 cut(s)	34, 319, 361
BsaXI	ACNNNNNCTCC	6 cut(s)	356, 386, 483, 513, 833, 863
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse118I	RCCGGY	2 cut(s)	319, 405
Bse1I	ACTGG	1 cut(s)	171
BseAI	TCCGGA	1 cut(s)	361
BseBI	CCWGG	2 cut(s)	182, 330
BseDI	CCNNGG	5 cut(s)	25, 164, 181, 329, 487
BseGI	GGATG	2 cut(s)	352, 774
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	4 cut(s)	276, 710, 747, 900
BseNI	ACTGG	1 cut(s)	171
BseRI	GAGGAG	2 cut(s)	288, 854
BseSI	GKGCMC	1 cut(s)	377
BseXI	GCAGC	2 cut(s)	337, 545
Bsh1236I	CGCG	1 cut(s)	113
BshFI	GGCC	4 cut(s)	107, 212, 853, 914
BshTI	ACCGGT	1 cut(s)	319
BsiHKAI	GWGCWC	1 cut(s)	377
BsiSI	CCGG	8 cut(s)	27, 35, 164, 302, 320, 362, 406, 487
BslFI	GGGAC	3 cut(s)	159, 321, 727
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	2 cut(s)	602, 736
BsmFI	GGGAC	3 cut(s)	159, 321, 727
BsnI	GGCC	4 cut(s)	107, 212, 853, 914
Bsp1286I	GDGCHC	1 cut(s)	377
Bsp13I	TCCGGA	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	247, 742
Bsp1720I	GCTNAGC	1 cut(s)	682
BspACI	CCGC	8 cut(s)	8, 30, 111, 305, 450, 615, 782, 915
BspANI	GGCC	4 cut(s)	107, 212, 853, 914
BspCNI	CTCAG	4 cut(s)	277, 711, 746, 901
BspEI	TCCGGA	1 cut(s)	361
BspFNI	CGCG	1 cut(s)	113
BspLI	GGNNCC	7 cut(s)	124, 169, 202, 324, 445, 715, 716
BsrFI	RCCGGY	2 cut(s)	319, 405
BsrI	ACTGG	1 cut(s)	171
BssAI	RCCGGY	2 cut(s)	319, 405
BssECI	CCNNGG	5 cut(s)	25, 164, 181, 329, 487
BssMI	GATC	2 cut(s)	247, 742
BssNI	GRCGYC	1 cut(s)	186
Bst2UI	CCWGG	2 cut(s)	182, 330
Bst4CI	ACNGT	4 cut(s)	150, 379, 511, 883
Bst6I	CTCTTC	1 cut(s)	600
BstACI	GRCGYC	1 cut(s)	186
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	6 cut(s)	355, 373, 407, 654, 855, 868
BstDEI	CTNAG	5 cut(s)	285, 682, 719, 733, 909
BstF5I	GGATG	2 cut(s)	352, 774
BstFNI	CGCG	1 cut(s)	113
BstH2I	RGCGCY	2 cut(s)	729, 769
BstHHI	GCGC	3 cut(s)	115, 728, 768
BstKTI	GATC	2 cut(s)	250, 745
BstMAI	GTCTC	2 cut(s)	602, 736
BstMBI	GATC	2 cut(s)	247, 742
BstMWI	GCNNNNNNNGC	3 cut(s)	302, 763, 863
BstNI	CCWGG	2 cut(s)	182, 330
BstSCI	CCNGG	5 cut(s)	25, 163, 180, 328, 486
BstSLI	GKGCMC	1 cut(s)	377
BstUI	CGCG	1 cut(s)	113
BstV1I	GCAGC	2 cut(s)	337, 545
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	742
BstXI	CCANNNNNNTGG	1 cut(s)	785
BstYI	RGATCY	1 cut(s)	742
BsuRI	GGCC	4 cut(s)	107, 212, 853, 914
BtsCI	GGATG	2 cut(s)	352, 774
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	6 cut(s)	355, 373, 407, 654, 855, 868
CfoI	GCGC	3 cut(s)	115, 728, 768
Cfr10I	RCCGGY	2 cut(s)	319, 405
Cfr13I	GGNCC	5 cut(s)	32, 40, 168, 384, 714
CpoI	CGGWCCG	1 cut(s)	32
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	3 cut(s)	50, 151, 459
CspAI	ACCGGT	1 cut(s)	319
CspI	CGGWCCG	1 cut(s)	32
CviAII	CATG	1 cut(s)	437
CviQI	GTAC	3 cut(s)	50, 151, 459
DdeI	CTNAG	5 cut(s)	285, 682, 719, 733, 909
DpnI	GATC	2 cut(s)	249, 744
DpnII	GATC	2 cut(s)	247, 742
DraI	TTTAAA	1 cut(s)	664
DriI	GACNNNNNGTC	1 cut(s)	38
Eam1104I	CTCTTC	1 cut(s)	600
Eam1105I	GACNNNNNGTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	600
EciI	GGCGGA	1 cut(s)	45
Eco47I	GGWCC	5 cut(s)	32, 40, 168, 384, 714
Eco72I	CACGTG	1 cut(s)	226
EcoO109I	RGGNCCY	2 cut(s)	40, 714
EcoRII	CCWGG	2 cut(s)	180, 328
FaeI	CATG	1 cut(s)	440
FaiI	YATR	4 cut(s)	282, 398, 438, 752
FaqI	GGGAC	3 cut(s)	159, 321, 727
FatI	CATG	1 cut(s)	436
FauI	CCCGC	1 cut(s)	298
FbaI	TGATCA	1 cut(s)	247
FblI	GTMKAC	1 cut(s)	888
Fnu4HI	GCNGC	5 cut(s)	351, 534, 616, 783, 915
FokI	GGATG	2 cut(s)	359, 761
Fsp4HI	GCNGC	5 cut(s)	351, 534, 616, 783, 915
GlaI	GCGC	3 cut(s)	114, 727, 767
GluI	GCNGC	5 cut(s)	351, 534, 616, 783, 915
HaeII	RGCGCY	2 cut(s)	729, 769
HaeIII	GGCC	4 cut(s)	107, 212, 853, 914
HapII	CCGG	8 cut(s)	27, 35, 164, 302, 320, 362, 406, 487
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	3 cut(s)	115, 728, 768
Hin1I	GRCGYC	1 cut(s)	186
Hin1II	CATG	1 cut(s)	440
Hin6I	GCGC	3 cut(s)	113, 726, 766
HinP1I	GCGC	3 cut(s)	113, 726, 766
HinfI	GANTC	2 cut(s)	453, 795
HpaII	CCGG	8 cut(s)	27, 35, 164, 302, 320, 362, 406, 487
HphI	GGTGA	3 cut(s)	257, 763, 886
Hpy166II	GTNNAC	3 cut(s)	375, 387, 889
Hpy188I	TCNGA	7 cut(s)	47, 98, 138, 474, 736, 800, 910
Hpy188III	TCNNGA	5 cut(s)	198, 217, 231, 362, 806
Hpy8I	GTNNAC	3 cut(s)	375, 387, 889
Hpy99I	CGWCG	3 cut(s)	86, 191, 218
HpyAV	CCTTC	3 cut(s)	136, 283, 337
HpyCH4III	ACNGT	4 cut(s)	150, 379, 511, 883
HpyCH4IV	ACGT	4 cut(s)	225, 558, 667, 846
HpyCH4V	TGCA	2 cut(s)	375, 857
HpyF10VI	GCNNNNNNNGC	3 cut(s)	302, 763, 863
HpyF3I	CTNAG	5 cut(s)	285, 682, 719, 733, 909
HpySE526I	ACGT	4 cut(s)	225, 558, 667, 846
Hsp92I	GRCGYC	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	440
HspAI	GCGC	3 cut(s)	113, 726, 766
KflI	GGGWCCC	1 cut(s)	714
Kpn2I	TCCGGA	1 cut(s)	361
KroI	GCCGGC	1 cut(s)	405
KroNI	GCCGGC	1 cut(s)	407
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	247, 742
LmnI	GCTCC	2 cut(s)	122, 544
Lsp1109I	GCAGC	2 cut(s)	337, 545
LweI	GCATC	1 cut(s)	337
MaeII	ACGT	4 cut(s)	225, 558, 667, 846
MaeIII	GTNAC	5 cut(s)	16, 173, 505, 589, 668
MalI	GATC	2 cut(s)	249, 744
MboI	GATC	2 cut(s)	247, 742
MboII	GAAGA	4 cut(s)	74, 405, 617, 737
MfeI	CAATTG	1 cut(s)	858
MflI	RGATCY	1 cut(s)	742
MhlI	GDGCHC	1 cut(s)	377
MluCI	AATT	3 cut(s)	568, 822, 858
MroI	TCCGGA	1 cut(s)	361
MroNI	GCCGGC	1 cut(s)	405
MseI	TTAA	2 cut(s)	267, 663
MslI	CAYNNNNRTG	1 cut(s)	395
MspA1I	CMGCKG	1 cut(s)	450
MspI	CCGG	8 cut(s)	27, 35, 164, 302, 320, 362, 406, 487
MspR9I	CCNGG	5 cut(s)	27, 165, 182, 330, 488
MunI	CAATTG	1 cut(s)	858
MvaI	CCWGG	2 cut(s)	182, 330
MvnI	CGCG	1 cut(s)	113
MwoI	GCNNNNNNNGC	3 cut(s)	302, 763, 863
NaeI	GCCGGC	1 cut(s)	407
NciI	CCSGG	3 cut(s)	27, 165, 488
NdeII	GATC	2 cut(s)	247, 742
NgoMIV	GCCGGC	1 cut(s)	405
NlaIII	CATG	1 cut(s)	440
NlaIV	GGNNCC	7 cut(s)	124, 169, 202, 324, 445, 715, 716
NmuCI	GTSAC	2 cut(s)	173, 505
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	1 cut(s)	407
PfeI	GAWTC	2 cut(s)	453, 795
PinAI	ACCGGT	1 cut(s)	319
PkrI	GCNGC	5 cut(s)	352, 535, 617, 784, 916
PmaCI	CACGTG	1 cut(s)	226
PmlI	CACGTG	1 cut(s)	226
Ppu21I	YACGTR	1 cut(s)	226
PpuMI	RGGWCCY	2 cut(s)	40, 714
Psp5II	RGGWCCY	2 cut(s)	40, 714
Psp6I	CCWGG	2 cut(s)	180, 328
PspCI	CACGTG	1 cut(s)	226
PspGI	CCWGG	2 cut(s)	180, 328
PspN4I	GGNNCC	7 cut(s)	124, 169, 202, 324, 445, 715, 716
PspPI	GGNCC	5 cut(s)	32, 40, 168, 384, 714
PspPPI	RGGWCCY	2 cut(s)	40, 714
PsuI	RGATCY	1 cut(s)	742
RsaI	GTAC	3 cut(s)	51, 152, 460
RsaNI	GTAC	3 cut(s)	50, 151, 459
RseI	CAYNNNNRTG	1 cut(s)	395
Rsr2I	CGGWCCG	1 cut(s)	32
RsrII	CGGWCCG	1 cut(s)	32
SaqAI	TTAA	2 cut(s)	267, 663
SatI	GCNGC	5 cut(s)	351, 534, 616, 783, 915
Sau3AI	GATC	2 cut(s)	247, 742
Sau96I	GGNCC	5 cut(s)	32, 40, 168, 384, 714
ScrFI	CCNGG	5 cut(s)	27, 165, 182, 330, 488
SduI	GDGCHC	1 cut(s)	377
SfaNI	GCATC	1 cut(s)	337
SinI	GGWCC	5 cut(s)	32, 40, 168, 384, 714
SmiMI	CAYNNNNRTG	1 cut(s)	395
Sse9I	AATT	3 cut(s)	568, 822, 858
SsiI	CCGC	8 cut(s)	8, 30, 111, 305, 450, 615, 782, 915
StyD4I	CCNGG	5 cut(s)	25, 163, 180, 328, 486
TaaI	ACNGT	4 cut(s)	150, 379, 511, 883
TaiI	ACGT	4 cut(s)	228, 561, 670, 849
TaqI	TCGA	2 cut(s)	189, 207
TasI	AATT	3 cut(s)	568, 822, 858
TatI	WGTACW	1 cut(s)	49
TauI	GCSGC	3 cut(s)	618, 785, 917
TfiI	GAWTC	2 cut(s)	453, 795
Tru1I	TTAA	2 cut(s)	267, 663
Tru9I	TTAA	2 cut(s)	267, 663
TscAI	CASTG	1 cut(s)	382
TseFI	GTSAC	2 cut(s)	173, 505
TseI	GCWGC	2 cut(s)	350, 533
Tsp45I	GTSAC	2 cut(s)	173, 505
TspDTI	ATGAA	2 cut(s)	17, 425
TspGWI	ACGGA	2 cut(s)	135, 593
TspRI	CASTG	1 cut(s)	382
VneI	GTGCAC	1 cut(s)	373
VpaK11BI	GGWCC	5 cut(s)	32, 40, 168, 384, 714
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.