Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0008376

Physical Location & Seq

Genomic Coordinates Forward (+)

2656608 .. 2659529

Gene Structure 2922 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G025800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGATGATGGGGAGGTAGGGACTTCAGACCAGGCTGTAGATACATTTGTTGATGAATTTCTGAAGAATACCCGGACTTGCACTCACACTCACACTTGCAACCCACCTGGCCCTGATGCTGCACATACACATACTTGCTACCACACCCATACCCAAGTTCTTCCGTCGGAAGATGATGATGGTGCTAAGAATAAAGAGCATTCCGTTCCCAGACCACGAAGAAGAAGGCCTTCCAGAAATAGAGAAGCAGTTCGAAAGTACAGGGAGAAAAAGAAGGCACATACAGCTTACTTAGAAGAGGAAGTGAAGAAATTGAGGCTGTTGAACCAGCAACTTGTTAGAAAAATACAGGGGCAGGCAATTCTTGAAACAGAGTTTTTAAGGCTGAAAAGCGTGTTTCTGGACCTTAGAGGAAAGATTGATCATGAGTTGGGTGCTTTCCCCTTCCAAAATCAGTGTAAGACTTCTTCTGTTCCAACGGAAATTGATTGTAATCCGCAGTTTACTGCTCGGGCAGTTGGACTTTGTTGTCAAACAGATTTACCATGCTTCTGTTCACCTGTTGGGCCATCAATGCAGGCTAGTATCAGCACCAGTGCGAAAGCAATGGTGCCAGTAGGAGGAAATTGTCAGCCTGCAGTAATTGATTGCCAAGCAAATACAAATGAGATGGCAAGTGCAGTACAAAACTCTACACATAGTAGAAACCTTGGTATCATTGGCAACAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

245

Amino Acids

27.06

Weight (kDa)

8.28

Isoelectric Point (pI)

35.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51960 AT3G51960 AT3G51960
fragaria_vesca	FvH4_7g01951
malus_domestica	MD02G1298400.v1.1 MD07G1025300.v1.1
prunus_persica	Prupe.2G025800_v2.0.a1 Prupe.2G025800_v2.0.a1 Prupe.2G025800_v2.0.a1
pyrus_communis	pycom02g25130 pycom07g01960
rosa_chinensis	RchiOBHm_Chr1g0318951
rosa_laevigata	RLG00000030515
rosa_multiflora	Rmu_sc0006626.1_g000014
rosa_roxburghii	Rroxscaffold_4G00328750
rosa_rugosa	Rorug01G0025700 Rorug01G0025800 Rorug01G0025900
rosa_samantha	Rh1AG037500 Rh1BG033900 Rh1CG036700 Rh1DG033600
rosa_wichuraiana	Rw1G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	528
AccB1I	GGYRCC	1 cut(s)	610
AciI	CCGC	1 cut(s)	497
AcsI	RAATTY	1 cut(s)	56
AcuI	CTGAAG	2 cut(s)	9, 83
AfaI	GTAC	2 cut(s)	260, 684
AfiI	CCNNNNNNNGG	1 cut(s)	620
AgsI	TTSAA	2 cut(s)	325, 368
AjnI	CCWGG	2 cut(s)	30, 106
AluBI	AGCT	2 cut(s)	287, 732
AluI	AGCT	2 cut(s)	287, 732
AlwNI	CAGNNNCTG	1 cut(s)	732
Ama87I	CYCGRG	1 cut(s)	510
AoxI	GGCC	3 cut(s)	109, 227, 566
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	1 cut(s)	56
Asp700I	GAANNNNTTC	2 cut(s)	229, 249
AspS9I	GGNCC	3 cut(s)	110, 403, 566
AsuC2I	CCSGG	1 cut(s)	73
AsuHPI	GGTGA	1 cut(s)	549
AsuII	TTCGAA	1 cut(s)	253
AvaI	CYCGRG	1 cut(s)	510
AvaII	GGWCC	1 cut(s)	403
BaeI	ACNNNNGTAYC	4 cut(s)	33, 66, 697, 730
BanI	GGYRCC	1 cut(s)	610
BarI	GAAGNNNNNNTAC	2 cut(s)	451, 483
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	4 cut(s)	2, 173, 577, 664
BciT130I	CCWGG	2 cut(s)	32, 108
BclI	TGATCA	1 cut(s)	421
BcnI	CCSGG	1 cut(s)	73
BfaI	CTAG	1 cut(s)	582
BfmI	CTRYAG	2 cut(s)	36, 636
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme1390I	CCNGG	3 cut(s)	32, 73, 108
Bme18I	GGWCC	1 cut(s)	403
BmeT110I	CYCGRG	1 cut(s)	510
BmgT120I	GGNCC	3 cut(s)	110, 403, 566
BmiI	GGNNCC	1 cut(s)	612
BmrFI	CCNGG	3 cut(s)	32, 73, 108
BmsI	GCATC	1 cut(s)	106
Bpu14I	TTCGAA	1 cut(s)	253
BpuMI	CCSGG	1 cut(s)	73
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	709
Bsc4I	CCNNNNNNNGG	1 cut(s)	620
Bse1I	ACTGG	2 cut(s)	594, 614
Bse3DI	GCAATG	1 cut(s)	612
Bse8I	GATNNNNATC	1 cut(s)	492
BseBI	CCWGG	2 cut(s)	32, 108
BseDI	CCNNGG	1 cut(s)	709
BseGI	GGATG	1 cut(s)	10
BseJI	GATNNNNATC	1 cut(s)	492
BseLI	CCNNNNNNNGG	1 cut(s)	620
BseMI	GCAATG	1 cut(s)	612
BseNI	ACTGG	2 cut(s)	594, 614
BseXI	GCAGC	1 cut(s)	106
BsgI	GTGCAG	2 cut(s)	105, 699
BshFI	GGCC	3 cut(s)	111, 229, 568
BshNI	GGYRCC	1 cut(s)	610
BsiHKCI	CYCGRG	1 cut(s)	510
BsiSI	CCGG	1 cut(s)	73
BslFI	GGGAC	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	620
BsmFI	GGGAC	1 cut(s)	34
BsmI	GAATGC	1 cut(s)	199
BsnI	GGCC	3 cut(s)	111, 229, 568
BsoBI	CYCGRG	1 cut(s)	510
Bsp119I	TTCGAA	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	421
BspACI	CCGC	1 cut(s)	497
BspANI	GGCC	3 cut(s)	111, 229, 568
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	612
BspMAI	CTGCAG	1 cut(s)	640
BspT104I	TTCGAA	1 cut(s)	253
BspT107I	GGYRCC	1 cut(s)	610
BsrDI	GCAATG	1 cut(s)	612
BsrI	ACTGG	2 cut(s)	594, 614
BssECI	CCNNGG	1 cut(s)	709
BssMI	GATC	1 cut(s)	421
BssT1I	CCWWGG	1 cut(s)	709
Bst2UI	CCWGG	2 cut(s)	32, 108
Bst6I	CTCTTC	1 cut(s)	291
BstBI	TTCGAA	1 cut(s)	253
BstC8I	GCNNGC	3 cut(s)	357, 579, 636
BstDEI	CTNAG	3 cut(s)	186, 292, 407
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	424
BstMBI	GATC	1 cut(s)	421
BstMWI	GCNNNNNNNGC	3 cut(s)	284, 574, 729
BstNI	CCWGG	2 cut(s)	32, 108
BstSCI	CCNGG	3 cut(s)	30, 71, 106
BstSFI	CTRYAG	2 cut(s)	36, 636
BstV1I	GCAGC	1 cut(s)	106
BsuRI	GGCC	3 cut(s)	111, 229, 568
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	2 cut(s)	461, 601
Cac8I	GCNNGC	3 cut(s)	357, 579, 636
CaiI	CAGNNNCTG	1 cut(s)	732
CciI	TCATGA	1 cut(s)	424
Cfr13I	GGNCC	3 cut(s)	110, 403, 566
Csp6I	GTAC	2 cut(s)	259, 683
CviAII	CATG	2 cut(s)	425, 546
CviQI	GTAC	2 cut(s)	259, 683
DdeI	CTNAG	3 cut(s)	186, 292, 407
DpnI	GATC	1 cut(s)	423
DpnII	GATC	1 cut(s)	421
DrdI	GACNNNNNNGTC	1 cut(s)	528
DseDI	GACNNNNNNGTC	1 cut(s)	528
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	709
Eco147I	AGGCCT	1 cut(s)	229
Eco47I	GGWCC	1 cut(s)	403
Eco57I	CTGAAG	2 cut(s)	9, 83
Eco88I	CYCGRG	1 cut(s)	510
EcoRII	CCWGG	2 cut(s)	30, 106
EcoT14I	CCWWGG	1 cut(s)	709
ErhI	CCWWGG	1 cut(s)	709
FaeI	CATG	2 cut(s)	428, 549
FaiI	YATR	7 cut(s)	126, 132, 150, 282, 426, 547, 699
FalI	AAGNNNNNCTT	2 cut(s)	214, 246
FaqI	GGGAC	1 cut(s)	34
FatI	CATG	2 cut(s)	424, 545
FbaI	TGATCA	1 cut(s)	421
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	17
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	582
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	3 cut(s)	111, 229, 568
HapII	CCGG	1 cut(s)	73
Hin1II	CATG	2 cut(s)	428, 549
HpaII	CCGG	1 cut(s)	73
HphI	GGTGA	1 cut(s)	549
Hpy166II	GTNNAC	2 cut(s)	504, 557
Hpy188I	TCNGA	3 cut(s)	28, 63, 169
Hpy188III	TCNNGA	4 cut(s)	234, 365, 401, 425
Hpy8I	GTNNAC	2 cut(s)	504, 557
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	4 cut(s)	219, 240, 268, 454
HpyCH4V	TGCA	6 cut(s)	81, 99, 122, 577, 638, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	284, 574, 729
HpyF3I	CTNAG	3 cut(s)	186, 292, 407
Hsp92II	CATG	2 cut(s)	428, 549
Ksp22I	TGATCA	1 cut(s)	421
Kzo9I	GATC	1 cut(s)	421
Lsp1109I	GCAGC	1 cut(s)	106
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	582
MalI	GATC	1 cut(s)	423
MboI	GATC	1 cut(s)	421
MboII	GAAGA	8 cut(s)	76, 152, 182, 231, 234, 308, 319, 459
MluCI	AATT	6 cut(s)	56, 311, 360, 483, 625, 642
MmeI	TCCRAC	3 cut(s)	147, 499, 500
MnlI	CCTC	5 cut(s)	7, 292, 309, 404, 614
MroXI	GAANNNNTTC	2 cut(s)	229, 249
MseI	TTAA	1 cut(s)	380
MspI	CCGG	1 cut(s)	73
MspR9I	CCNGG	3 cut(s)	32, 73, 108
Mva1269I	GAATGC	1 cut(s)	199
MvaI	CCWGG	2 cut(s)	32, 108
MwoI	GCNNNNNNNGC	3 cut(s)	284, 574, 729
NciI	CCSGG	1 cut(s)	73
NdeII	GATC	1 cut(s)	421
NlaIII	CATG	2 cut(s)	428, 549
NlaIV	GGNNCC	1 cut(s)	612
NspV	TTCGAA	1 cut(s)	253
PagI	TCATGA	1 cut(s)	424
PceI	AGGCCT	1 cut(s)	229
PctI	GAATGC	1 cut(s)	199
PdmI	GAANNNNTTC	2 cut(s)	229, 249
PkrI	GCNGC	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	30, 106
PspGI	CCWGG	2 cut(s)	30, 106
PspN4I	GGNNCC	1 cut(s)	612
PspPI	GGNCC	3 cut(s)	110, 403, 566
PstI	CTGCAG	1 cut(s)	640
PstNI	CAGNNNCTG	1 cut(s)	732
RsaI	GTAC	2 cut(s)	260, 684
RsaNI	GTAC	2 cut(s)	259, 683
SaqAI	TTAA	1 cut(s)	380
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	1 cut(s)	421
Sau96I	GGNCC	3 cut(s)	110, 403, 566
ScrFI	CCNGG	3 cut(s)	32, 73, 108
SetI	ASST	7 cut(s)	18, 109, 289, 408, 562, 711, 734
SfaNI	GCATC	1 cut(s)	106
SfcI	CTRYAG	2 cut(s)	36, 636
SfuI	TTCGAA	1 cut(s)	253
SinI	GGWCC	1 cut(s)	403
Sse9I	AATT	6 cut(s)	56, 311, 360, 483, 625, 642
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	1 cut(s)	497
SspMI	CTAG	1 cut(s)	582
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	3 cut(s)	30, 71, 106
StyI	CCWWGG	1 cut(s)	709
TaqI	TCGA	1 cut(s)	253
TasI	AATT	6 cut(s)	56, 311, 360, 483, 625, 642
TatI	WGTACW	2 cut(s)	258, 682
Tru1I	TTAA	1 cut(s)	380
Tru9I	TTAA	1 cut(s)	380
TscAI	CASTG	2 cut(s)	461, 601
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	1 cut(s)	69
TspGWI	ACGGA	3 cut(s)	153, 193, 494
TspRI	CASTG	2 cut(s)	461, 601
VpaK11BI	GGWCC	1 cut(s)	403
XapI	RAATTY	1 cut(s)	56
XmnI	GAANNNNTTC	2 cut(s)	229, 249
XspI	CTAG	1 cut(s)	582

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.