Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008376

Physical Location & Seq

Genomic Coordinates Reverse (-)

23190008 .. 23190745

Gene Structure 738 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g25130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 738 bp

ATGGATGATGGGGAGGTGGTTACTTCAGACCATGCTTTGCTTCCAAATCCCAATTCCTCTAGCAATTTTCATGGTTCAACTTATGAAGATACATTTTTCGATGAATTTTTGAAGACCGCGCGGACGTGCACTCACACTCACACTTGCAACCCACCTGGCCCTGAAGCTGCACATACACACACTTGCTACCACACACACACCCAAGTTCTTCCTTCGGAAGATGACGATGGTACAAAGAATAAAGAGCATTCCATCCTGAGACCACGAAGAAGGAGGTCTTCGGGAAATAAAGAAGCAGTTCGGAAGTACAGGGAGAAAAAGAAGGCACATACAGCTTATTTGGAAGAGGAAGTCAAGAAATTGCAGGTGTTGAACCAGCAACTTGTTAGGAAATTACAGGGGCAGGCAATTCTCGAAGCAGAGCGTTTAAGGCTGAGAGGCCTTTTGCTGGAACTTAGAGGAAAGATTGATACTGAGTTGGGTGCTTTCCCCTTCCAAAAACAATGTAACAGTAATACTTATTTCAAGGACAGCCAGTGTAATCTGCAGTCTAGTGTTGGGGCAATGGGACTTCATTGTCAAACCGATTTACCATGCTTCTGTCCGCCTGTTGGGTCATCCGTTCAGGCTAGTATCGGTGCAAGGGGGGAAACAATGGTGCCATCAGGAGGAAATTGTCAGCCTGCAGTAATTGATTGCCGAGCAAACACAAATGAGGCGTCAACACAAGCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0042802 GO:0042803 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0047484 GO:0048519 GO:0048583 GO:0048585 GO:0050789 GO:0065007 GO:0080134 GO:1901000 GO:1901001

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

bZIP_2

Protein Analysis

246

Amino Acids

27.17

Weight (kDa)

7.61

Isoelectric Point (pI)

41.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bZIP_2	PF07716	89 - 132	6.9e-10	Basic region leucine zipper
bZIP_1	PF00170	89 - 133	3.4e-06	bZIP transcription factor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008376)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51960 AT3G51960 AT3G51960
fragaria_vesca	FvH4_7g01951
malus_domestica	MD02G1298400.v1.1 MD07G1025300.v1.1
prunus_persica	Prupe.2G025800_v2.0.a1 Prupe.2G025800_v2.0.a1 Prupe.2G025800_v2.0.a1
pyrus_communis	pycom02g25130 pycom07g01960
rosa_chinensis	RchiOBHm_Chr1g0318951
rosa_laevigata	RLG00000030515
rosa_multiflora	Rmu_sc0006626.1_g000014
rosa_roxburghii	Rroxscaffold_4G00328750
rosa_rugosa	Rorug01G0025700 Rorug01G0025800 Rorug01G0025900
rosa_samantha	Rh1AG037500 Rh1BG033900 Rh1CG036700 Rh1DG033600
rosa_wichuraiana	Rw1G002910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	355
AasI	GACNNNNNNGTC	1 cut(s)	576
Acc36I	ACCTGC	1 cut(s)	355
AccB1I	GGYRCC	1 cut(s)	658
AccII	CGCG	2 cut(s)	119, 121
AciI	CCGC	3 cut(s)	117, 121, 605
AcsI	RAATTY	1 cut(s)	104
AcuI	CTGAAG	2 cut(s)	9, 183
AcyI	GRCGYC	1 cut(s)	719
AfaI	GTAC	2 cut(s)	232, 308
AfiI	CCNNNNNNNGG	3 cut(s)	448, 611, 668
AgsI	TTSAA	4 cut(s)	78, 112, 373, 526
AjiI	CACGTC	1 cut(s)	126
AjnI	CCWGG	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	37, 69
AluBI	AGCT	2 cut(s)	167, 335
AluI	AGCT	2 cut(s)	167, 335
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	1 cut(s)	253
Alw44I	GTGCAC	1 cut(s)	127
AoxI	GGCC	2 cut(s)	157, 439
ApaLI	GTGCAC	1 cut(s)	127
ApeKI	GCWGC	1 cut(s)	167
ApoI	RAATTY	1 cut(s)	104
ArsI	GACNNNNNNTTYG	2 cut(s)	704, 736
Asp700I	GAANNNNTTC	1 cut(s)	297
AspLEI	GCGC	1 cut(s)	121
AspS9I	GGNCC	1 cut(s)	158
BaeGI	GKGCMC	1 cut(s)	131
BanI	GGYRCC	1 cut(s)	658
BbsI	GAAGAC	2 cut(s)	119, 270
Bbv12I	GWGCWC	1 cut(s)	131
BbvI	GCAGC	1 cut(s)	154
BccI	CCATC	4 cut(s)	2, 221, 260, 670
BciT130I	CCWGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	253
BfaI	CTAG	3 cut(s)	60, 552, 630
BfmI	CTRYAG	2 cut(s)	545, 684
BfuAI	ACCTGC	1 cut(s)	355
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	156
BmgBI	CACGTC	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	660
BmrFI	CCNGG	1 cut(s)	156
BpiI	GAAGAC	2 cut(s)	119, 270
BsaHI	GRCGYC	1 cut(s)	719
BsaI	GGTCTC	1 cut(s)	253
Bsc4I	CCNNNNNNNGG	3 cut(s)	448, 611, 668
Bse1I	ACTGG	1 cut(s)	535
Bse3DI	GCAATG	1 cut(s)	570
BseBI	CCWGG	1 cut(s)	156
BseGI	GGATG	3 cut(s)	10, 252, 617
BseLI	CCNNNNNNNGG	3 cut(s)	448, 611, 668
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	3 cut(s)	248, 425, 465
BseNI	ACTGG	1 cut(s)	535
BseSI	GKGCMC	1 cut(s)	131
BseXI	GCAGC	1 cut(s)	154
BsgI	GTGCAG	1 cut(s)	153
Bsh1236I	CGCG	2 cut(s)	119, 121
BshFI	GGCC	2 cut(s)	159, 441
BshNI	GGYRCC	1 cut(s)	658
BsiHKAI	GWGCWC	1 cut(s)	131
BslFI	GGGAC	1 cut(s)	582
BslI	CCNNNNNNNGG	3 cut(s)	448, 611, 668
BsmAI	GTCTC	1 cut(s)	253
BsmFI	GGGAC	1 cut(s)	582
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	2 cut(s)	159, 441
Bso31I	GGTCTC	1 cut(s)	253
Bsp1286I	GDGCHC	1 cut(s)	131
BspACI	CCGC	3 cut(s)	117, 121, 605
BspANI	GGCC	2 cut(s)	159, 441
BspCNI	CTCAG	3 cut(s)	249, 426, 466
BspFNI	CGCG	2 cut(s)	119, 121
BspLI	GGNNCC	1 cut(s)	660
BspMAI	CTGCAG	2 cut(s)	549, 688
BspMI	ACCTGC	1 cut(s)	355
BspT107I	GGYRCC	1 cut(s)	658
BspTNI	GGTCTC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	535
BssNI	GRCGYC	1 cut(s)	719
Bst2UI	CCWGG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	512
Bst6I	CTCTTC	1 cut(s)	339
BstACI	GRCGYC	1 cut(s)	719
BstC8I	GCNNGC	2 cut(s)	405, 684
BstDEI	CTNAG	4 cut(s)	257, 434, 455, 474
BstF5I	GGATG	3 cut(s)	10, 252, 617
BstFNI	CGCG	2 cut(s)	119, 121
BstHHI	GCGC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	2 cut(s)	332, 430
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	2 cut(s)	545, 684
BstSLI	GKGCMC	1 cut(s)	131
BstUI	CGCG	2 cut(s)	119, 121
BstV1I	GCAGC	1 cut(s)	154
BstV2I	GAAGAC	2 cut(s)	119, 270
BsuRI	GGCC	2 cut(s)	159, 441
BtrI	CACGTC	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	10, 252, 617
BtsIMutI	CAGTG	1 cut(s)	542
BveI	ACCTGC	1 cut(s)	355
Cac8I	GCNNGC	2 cut(s)	405, 684
CfoI	GCGC	1 cut(s)	121
Cfr13I	GGNCC	1 cut(s)	158
CseI	GACGC	1 cut(s)	708
Csp6I	GTAC	2 cut(s)	231, 307
CviAII	CATG	3 cut(s)	32, 71, 594
CviJI	RGCY	9 cut(s)	159, 167, 335, 433, 441, 534, 629, 682, 731
CviKI_1	RGCY	9 cut(s)	159, 167, 335, 433, 441, 534, 629, 682, 731
CviQI	GTAC	2 cut(s)	231, 307
DdeI	CTNAG	4 cut(s)	257, 434, 455, 474
DrdI	GACNNNNNNGTC	1 cut(s)	576
DseDI	GACNNNNNNGTC	1 cut(s)	576
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
EciI	GGCGGA	1 cut(s)	594
Eco147I	AGGCCT	1 cut(s)	441
Eco31I	GGTCTC	1 cut(s)	253
Eco57I	CTGAAG	2 cut(s)	9, 183
EcoRII	CCWGG	1 cut(s)	154
FaeI	CATG	3 cut(s)	35, 74, 597
FaiI	YATR	6 cut(s)	33, 72, 84, 174, 330, 595
FalI	AAGNNNNNCTT	2 cut(s)	262, 294
FaqI	GGGAC	1 cut(s)	582
FatI	CATG	3 cut(s)	31, 70, 593
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	3 cut(s)	17, 239, 604
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	3 cut(s)	60, 552, 630
GlaI	GCGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	159, 441
HgaI	GACGC	1 cut(s)	708
HhaI	GCGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	719
Hin1II	CATG	3 cut(s)	35, 74, 597
Hin6I	GCGC	1 cut(s)	119
HinP1I	GCGC	1 cut(s)	119
HincII	GTYRAC	1 cut(s)	723
HindII	GTYRAC	1 cut(s)	723
Hpy166II	GTNNAC	2 cut(s)	129, 723
Hpy188I	TCNGA	3 cut(s)	28, 217, 303
Hpy188III	TCNNGA	5 cut(s)	256, 282, 355, 413, 666
Hpy8I	GTNNAC	2 cut(s)	129, 723
HpyAV	CCTTC	4 cut(s)	222, 264, 316, 502
HpyCH4III	ACNGT	1 cut(s)	512
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	7 cut(s)	129, 147, 170, 364, 547, 641, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	332, 430
HpyF3I	CTNAG	4 cut(s)	257, 434, 455, 474
HpySE526I	ACGT	1 cut(s)	125
Hsp92I	GRCGYC	1 cut(s)	719
Hsp92II	CATG	3 cut(s)	35, 74, 597
HspAI	GCGC	1 cut(s)	119
Lsp1109I	GCAGC	1 cut(s)	154
MaeI	CTAG	3 cut(s)	60, 552, 630
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	2 cut(s)	19, 506
MboII	GAAGA	7 cut(s)	98, 124, 200, 230, 270, 279, 356
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	8 cut(s)	52, 64, 104, 359, 392, 408, 673, 690
MnlI	CCTC	8 cut(s)	7, 67, 267, 340, 431, 452, 662, 709
MroXI	GAANNNNTTC	1 cut(s)	297
MseI	TTAA	1 cut(s)	428
MspR9I	CCNGG	1 cut(s)	156
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	1 cut(s)	156
MvnI	CGCG	2 cut(s)	119, 121
MwoI	GCNNNNNNNGC	2 cut(s)	332, 430
NlaIII	CATG	3 cut(s)	35, 74, 597
NlaIV	GGNNCC	1 cut(s)	660
NmeAIII	GCCGAG	1 cut(s)	725
PaqCI	CACCTGC	1 cut(s)	355
PceI	AGGCCT	1 cut(s)	441
PctI	GAATGC	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	297
PkrI	GCNGC	1 cut(s)	169
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	660
PspPI	GGNCC	1 cut(s)	158
PstI	CTGCAG	2 cut(s)	549, 688
RsaI	GTAC	2 cut(s)	232, 308
RsaNI	GTAC	2 cut(s)	231, 307
SaqAI	TTAA	1 cut(s)	428
SatI	GCNGC	1 cut(s)	168
Sau96I	GGNCC	1 cut(s)	158
ScrFI	CCNGG	1 cut(s)	156
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	7 cut(s)	18, 128, 157, 169, 278, 337, 369
SfcI	CTRYAG	2 cut(s)	545, 684
Sse9I	AATT	8 cut(s)	52, 64, 104, 359, 392, 408, 673, 690
SseBI	AGGCCT	1 cut(s)	441
SsiI	CCGC	3 cut(s)	117, 121, 605
SspMI	CTAG	3 cut(s)	60, 552, 630
StuI	AGGCCT	1 cut(s)	441
StyD4I	CCNGG	1 cut(s)	154
TaaI	ACNGT	1 cut(s)	512
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	2 cut(s)	99, 414
TasI	AATT	8 cut(s)	52, 64, 104, 359, 392, 408, 673, 690
TatI	WGTACW	1 cut(s)	306
Tru1I	TTAA	1 cut(s)	428
Tru9I	TTAA	1 cut(s)	428
TscAI	CASTG	1 cut(s)	542
TseI	GCWGC	1 cut(s)	167
TspDTI	ATGAA	4 cut(s)	59, 99, 117, 563
TspGWI	ACGGA	1 cut(s)	610
TspRI	CASTG	1 cut(s)	542
VneI	GTGCAC	1 cut(s)	127
XapI	RAATTY	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	297
XspI	CTAG	3 cut(s)	60, 552, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.