Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012915

Physical Location & Seq

Genomic Coordinates Forward (+)

19287757 .. 19289388

Gene Structure 1632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G51990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1089 bp

ATGGGTTATCTCTCCTGCAAAGCTGGATCCGCCGTCGCAATCGCCGTTTCATCTGCCGCATCAACCTCCGGATCCACCTCCAGCAAAGCTTCTGCTCCTCCCGAATCTCCCATTGAAGACCGTCCTAGACTTCGTCGTTTCCTCCATCGCGATCTCGAATCAGCCACAGGAGGTTTCGACATCAACAATCTCCTCGGACGTGGAAGCCATGGAAGCGTTTACAAAGCTGTCATCGGTTCACGTCACATCGCGGTCAAGAGACCTTCGAAATCTCGAGAAATCAGCCGTGAGTTCCACAACGAATTCGAGATTCTCTCCAGAATCCGTAGCCCTAGGTTTGTGAATCTCTTAGGTTTTAGCGCCGATAACTCCAAAGAACCACTTCTCGTTGTTGAATTCATGGGAAACGGAAGCTTATACGACGTGATTCACTCAGATACCGTTTTAAACTCCGGTGCGATTTCGAGCTGGAGTAAGAGAATCAAAATCGCTCTTCAGATTGCAAAAGCCGTACATCTTCTACATTCTCAAGAGACACCGATCATACACAGAGATATAAAATCAGCAAACGTATTGATGGATAAGAATCTAAACGCGAAGCTAGGCGATTTCGGATTAGCGATCAGATGCAATGTTGATGATCAAAAAGTGAAATCAACACCACCTGCAGGAACAATGGGTTACTTAGATCCAGATTACGTAACGGCTGATAGATTAAGCACGAAAACTGATGTGTTTAGCTTCGGGATCTTGTTGTTAGAGATAATCAGCGGAAGAAAAGCAATCGACGTTAGATATTCGCCGTCGTTTATAGTAGATTGGGCGATTCCGATGATAAAAAGAGGCAAAATCGGTGGGATTTATGATCCGAGAATCGGACCACCGATTGATGTAAGTGTGAGGAATCATTTGGGGTTAGTGGCGGCTAAGTGTGTGAGAACGTGTAGAGAGAAACGGCCGGGGATGGAGGAAGTGGTTGGGTGGCTCACGGGGTTGACTAAGTCGGTTAGGTCACGACGGTGGGATGAGTTAAGCATTGGAAACCCGTGTATGATGGTCGAGACGGTGGGTGGTCGACCCGTGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

362

Amino Acids

39.59

Weight (kDa)

9.59

Isoelectric Point (pI)

41.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	61 - 326	2.3e-38	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	61 - 325	7.7e-38	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51990
fragaria_vesca	FvH4_7g01890
malus_domestica	MD02G1299900.v1.1 MD07G1025000.v1.1
prunus_persica	Prupe.2G024700_v2.0.a1
pyrus_communis	pycom02g25190 pycom03g05450 pycom07g01930
rosa_chinensis	RchiOBHm_Chr1g0318491
rosa_laevigata	RLG00000030533
rosa_multiflora	Rmu_co8489629.1_g000001
rosa_roxburghii	Rroxscaffold_4G00329110
rosa_rugosa	Rorug01G0021700
rosa_samantha	Rh1AG034100 Rh1BG030200 Rh1CG033600 Rh1DG037000
rosa_wichuraiana	Rw1G002710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	673
Acc36I	ACCTGC	1 cut(s)	673
AccI	GTMKAC	1 cut(s)	1075
AccII	CGCG	3 cut(s)	150, 251, 596
AccIII	TCCGGA	1 cut(s)	68
AciI	CCGC	5 cut(s)	30, 57, 251, 771, 923
AclWI	GGATC	7 cut(s)	21, 34, 66, 79, 683, 755, 860
AcoI	YGGCCR	1 cut(s)	956
AcsI	RAATTY	2 cut(s)	302, 395
AcuI	CTGAAG	1 cut(s)	479
AfaI	GTAC	1 cut(s)	513
AfiI	CCNNNNNNNGG	2 cut(s)	668, 875
AflIII	ACRYGT	1 cut(s)	941
AgsI	TTSAA	2 cut(s)	116, 395
AjiI	CACGTC	3 cut(s)	200, 242, 424
AleI	CACNNNNGTG	1 cut(s)	1018
AluBI	AGCT	7 cut(s)	23, 89, 227, 414, 468, 601, 741
AluI	AGCT	7 cut(s)	23, 89, 227, 414, 468, 601, 741
Alw26I	GTCTC	3 cut(s)	253, 527, 1055
AlwI	GGATC	7 cut(s)	21, 34, 66, 79, 683, 755, 860
Ama87I	CYCGRG	1 cut(s)	273
Aor13HI	TCCGGA	1 cut(s)	68
AoxI	GGCC	1 cut(s)	956
ApoI	RAATTY	2 cut(s)	302, 395
Asp700I	GAANNNNTTC	1 cut(s)	381
AspA2I	CCTAGG	1 cut(s)	332
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	878
AsuC2I	CCSGG	1 cut(s)	960
AsuII	TTCGAA	1 cut(s)	266
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	1 cut(s)	878
AvrII	CCTAGG	1 cut(s)	332
BamHI	GGATCC	2 cut(s)	26, 71
BbsI	GAAGAC	1 cut(s)	123
BccI	CCATC	4 cut(s)	153, 571, 958, 1048
BceAI	ACGGC	7 cut(s)	17, 29, 270, 494, 720, 787, 971
BclI	TGATCA	1 cut(s)	640
BcnI	CCSGG	1 cut(s)	960
BcoDI	GTCTC	3 cut(s)	253, 527, 1055
BfaI	CTAG	3 cut(s)	126, 333, 602
BfmI	CTRYAG	1 cut(s)	666
BfoI	RGCGCY	1 cut(s)	363
BfuAI	ACCTGC	1 cut(s)	673
BisI	GCNGC	2 cut(s)	57, 924
BlnI	CCTAGG	1 cut(s)	332
BlsI	GCNGC	2 cut(s)	58, 925
Bme1390I	CCNGG	1 cut(s)	960
Bme18I	GGWCC	1 cut(s)	878
BmeT110I	CYCGRG	1 cut(s)	273
BmgBI	CACGTC	3 cut(s)	200, 242, 424
BmgT120I	GGNCC	1 cut(s)	878
BmiI	GGNNCC	2 cut(s)	28, 73
BmrFI	CCNGG	1 cut(s)	960
BmsI	GCATC	2 cut(s)	68, 617
BpiI	GAAGAC	1 cut(s)	123
BplI	GAGNNNNNCTC	2 cut(s)	299, 331
BpmI	CTGGAG	3 cut(s)	64, 301, 490
Bpu14I	TTCGAA	1 cut(s)	266
BpuEI	CTTGAG	1 cut(s)	513
BpuMI	CCSGG	1 cut(s)	960
BsaAI	YACGTR	1 cut(s)	700
BsaBI	GATNNNNATC	1 cut(s)	585
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	5 cut(s)	193, 208, 332, 959, 1080
BsaWI	WCCGGW	2 cut(s)	68, 452
Bsc4I	CCNNNNNNNGG	2 cut(s)	668, 875
Bse3DI	GCAATG	1 cut(s)	637
Bse8I	GATNNNNATC	1 cut(s)	585
BseAI	TCCGGA	1 cut(s)	68
BseDI	CCNNGG	5 cut(s)	193, 208, 332, 959, 1080
BseGI	GGATG	2 cut(s)	969, 1030
BseJI	GATNNNNATC	1 cut(s)	585
BseLI	CCNNNNNNNGG	2 cut(s)	668, 875
BseMI	GCAATG	1 cut(s)	637
BseMII	CTCAG	1 cut(s)	447
BseRI	GAGGAG	2 cut(s)	87, 182
BseX3I	CGGCCG	1 cut(s)	956
Bsh1236I	CGCG	3 cut(s)	150, 251, 596
Bsh1285I	CGRYCG	1 cut(s)	959
BshFI	GGCC	1 cut(s)	958
BsiEI	CGRYCG	1 cut(s)	959
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	3 cut(s)	69, 453, 959
BslI	CCNNNNNNNGG	2 cut(s)	668, 875
BsmAI	GTCTC	3 cut(s)	253, 527, 1055
BsmBI	CGTCTC	1 cut(s)	1055
BsnI	GGCC	1 cut(s)	958
Bso31I	GGTCTC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	273
Bsp119I	TTCGAA	1 cut(s)	266
Bsp13I	TCCGGA	1 cut(s)	68
Bsp143I	GATC	9 cut(s)	26, 71, 151, 540, 621, 640, 688, 747, 865
Bsp19I	CCATGG	1 cut(s)	208
Bsp68I	TCGCGA	1 cut(s)	150
BspACI	CCGC	5 cut(s)	30, 57, 251, 771, 923
BspANI	GGCC	1 cut(s)	958
BspCNI	CTCAG	1 cut(s)	446
BspEI	TCCGGA	1 cut(s)	68
BspFNI	CGCG	3 cut(s)	150, 251, 596
BspLI	GGNNCC	2 cut(s)	28, 73
BspMAI	CTGCAG	1 cut(s)	670
BspMI	ACCTGC	1 cut(s)	673
BspPI	GGATC	7 cut(s)	21, 34, 66, 79, 683, 755, 860
BspQI	GCTCTTC	1 cut(s)	498
BspT104I	TTCGAA	1 cut(s)	266
BspTNI	GGTCTC	1 cut(s)	253
BsrDI	GCAATG	1 cut(s)	637
BssECI	CCNNGG	5 cut(s)	193, 208, 332, 959, 1080
BssMI	GATC	9 cut(s)	26, 71, 151, 540, 621, 640, 688, 747, 865
BssT1I	CCWWGG	2 cut(s)	208, 332
Bst4CI	ACNGT	4 cut(s)	122, 442, 1020, 1066
Bst6I	CTCTTC	1 cut(s)	498
BstBAI	YACGTR	1 cut(s)	700
BstBI	TTCGAA	1 cut(s)	266
BstDEI	CTNAG	5 cut(s)	349, 433, 685, 927, 999
BstDSI	CCRYGG	2 cut(s)	208, 1080
BstF5I	GGATG	2 cut(s)	969, 1030
BstFNI	CGCG	3 cut(s)	150, 251, 596
BstH2I	RGCGCY	1 cut(s)	363
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	9 cut(s)	29, 74, 154, 543, 624, 643, 691, 750, 868
BstMAI	GTCTC	3 cut(s)	253, 527, 1055
BstMBI	GATC	9 cut(s)	26, 71, 151, 540, 621, 640, 688, 747, 865
BstMCI	CGRYCG	1 cut(s)	959
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 213
BstSCI	CCNGG	1 cut(s)	958
BstSFI	CTRYAG	1 cut(s)	666
BstSNI	TACGTA	1 cut(s)	700
BstUI	CGCG	3 cut(s)	150, 251, 596
BstV2I	GAAGAC	1 cut(s)	123
BstX2I	RGATCY	4 cut(s)	26, 71, 688, 747
BstYI	RGATCY	4 cut(s)	26, 71, 688, 747
BstZI	CGGCCG	1 cut(s)	956
BsuRI	GGCC	1 cut(s)	958
BtgI	CCRYGG	2 cut(s)	208, 1080
BtgZI	GCGATG	2 cut(s)	131, 232
BtrI	CACGTC	3 cut(s)	200, 242, 424
BtsCI	GGATG	2 cut(s)	969, 1030
BtuMI	TCGCGA	1 cut(s)	150
BveI	ACCTGC	1 cut(s)	673
CfoI	GCGC	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	878
Csp6I	GTAC	1 cut(s)	512
CspCI	CAANNNNNGTGG	2 cut(s)	835, 870
CviAII	CATG	2 cut(s)	209, 400
CviQI	GTAC	1 cut(s)	512
DdeI	CTNAG	5 cut(s)	349, 433, 685, 927, 999
DpnI	GATC	9 cut(s)	28, 73, 153, 542, 623, 642, 690, 749, 867
DpnII	GATC	9 cut(s)	26, 71, 151, 540, 621, 640, 688, 747, 865
DraI	TTTAAA	1 cut(s)	447
EaeI	YGGCCR	1 cut(s)	956
EagI	CGGCCG	1 cut(s)	956
Eam1104I	CTCTTC	1 cut(s)	498
EarI	CTCTTC	1 cut(s)	498
EciI	GGCGGA	1 cut(s)	19
EclXI	CGGCCG	1 cut(s)	956
Eco105I	TACGTA	1 cut(s)	700
Eco130I	CCWWGG	2 cut(s)	208, 332
Eco31I	GGTCTC	1 cut(s)	253
Eco47I	GGWCC	1 cut(s)	878
Eco52I	CGGCCG	1 cut(s)	956
Eco57I	CTGAAG	1 cut(s)	479
Eco88I	CYCGRG	1 cut(s)	273
EcoRI	GAATTC	2 cut(s)	302, 395
EcoT14I	CCWWGG	2 cut(s)	208, 332
ErhI	CCWWGG	2 cut(s)	208, 332
Esp3I	CGTCTC	1 cut(s)	1055
FaeI	CATG	2 cut(s)	212, 403
FaiI	YATR	8 cut(s)	210, 401, 418, 545, 557, 812, 864, 1052
FalI	AAGNNNNNCTT	2 cut(s)	366, 398
FatI	CATG	2 cut(s)	208, 399
FbaI	TGATCA	1 cut(s)	640
FblI	GTMKAC	1 cut(s)	1075
Fnu4HI	GCNGC	2 cut(s)	57, 924
FokI	GGATG	2 cut(s)	976, 1037
Fsp4HI	GCNGC	2 cut(s)	57, 924
FspBI	CTAG	3 cut(s)	126, 333, 602
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	2 cut(s)	57, 924
GsuI	CTGGAG	3 cut(s)	64, 301, 490
HaeII	RGCGCY	1 cut(s)	363
HaeIII	GGCC	1 cut(s)	958
HapII	CCGG	3 cut(s)	69, 453, 959
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	2 cut(s)	212, 403
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HincII	GTYRAC	2 cut(s)	996, 1076
HindII	GTYRAC	2 cut(s)	996, 1076
HindIII	AAGCTT	2 cut(s)	87, 412
HpaII	CCGG	3 cut(s)	69, 453, 959
Hpy166II	GTNNAC	4 cut(s)	220, 239, 996, 1076
Hpy188I	TCNGA	8 cut(s)	197, 436, 498, 614, 626, 831, 870, 878
Hpy8I	GTNNAC	4 cut(s)	220, 239, 996, 1076
Hpy99I	CGWCG	6 cut(s)	38, 138, 425, 791, 808, 1020
HpyAV	CCTTC	1 cut(s)	273
HpyCH4III	ACNGT	4 cut(s)	122, 442, 1020, 1066
HpyCH4IV	ACGT	7 cut(s)	199, 241, 423, 570, 699, 789, 941
HpyCH4V	TGCA	4 cut(s)	18, 503, 630, 668
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 213
HpyF3I	CTNAG	5 cut(s)	349, 433, 685, 927, 999
HpySE526I	ACGT	7 cut(s)	199, 241, 423, 570, 699, 789, 941
Hsp92II	CATG	2 cut(s)	212, 403
HspAI	GCGC	1 cut(s)	360
Kpn2I	TCCGGA	1 cut(s)	68
Ksp22I	TGATCA	1 cut(s)	640
Kzo9I	GATC	9 cut(s)	26, 71, 151, 540, 621, 640, 688, 747, 865
LguI	GCTCTTC	1 cut(s)	498
LmnI	GCTCC	1 cut(s)	100
LweI	GCATC	2 cut(s)	68, 617
MaeI	CTAG	3 cut(s)	126, 333, 602
MaeII	ACGT	7 cut(s)	199, 241, 423, 570, 699, 789, 941
MaeIII	GTNAC	4 cut(s)	242, 680, 700, 1011
MalI	GATC	9 cut(s)	28, 73, 153, 542, 623, 642, 690, 749, 867
MboI	GATC	9 cut(s)	26, 71, 151, 540, 621, 640, 688, 747, 865
MboII	GAAGA	4 cut(s)	128, 485, 509, 786
MflI	RGATCY	4 cut(s)	26, 71, 688, 747
MluCI	AATT	2 cut(s)	302, 395
MnlI	CCTC	9 cut(s)	76, 88, 108, 152, 164, 203, 836, 894, 961
MroI	TCCGGA	1 cut(s)	68
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	3 cut(s)	446, 716, 1031
MslI	CAYNNNNRTG	1 cut(s)	1018
MspA1I	CMGCKG	1 cut(s)	771
MspI	CCGG	3 cut(s)	69, 453, 959
MspR9I	CCNGG	1 cut(s)	960
MvnI	CGCG	3 cut(s)	150, 251, 596
MwoI	GCNNNNNNNGC	2 cut(s)	29, 213
NciI	CCSGG	1 cut(s)	960
NcoI	CCATGG	1 cut(s)	208
NdeII	GATC	9 cut(s)	26, 71, 151, 540, 621, 640, 688, 747, 865
NlaIII	CATG	2 cut(s)	212, 403
NlaIV	GGNNCC	2 cut(s)	28, 73
NmuCI	GTSAC	2 cut(s)	242, 1011
NruI	TCGCGA	1 cut(s)	150
NspV	TTCGAA	1 cut(s)	266
OliI	CACNNNNGTG	1 cut(s)	1018
PaeR7I	CTCGAG	1 cut(s)	273
PaqCI	CACCTGC	1 cut(s)	673
PciSI	GCTCTTC	1 cut(s)	498
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PdmI	GAANNNNTTC	1 cut(s)	381
PflFI	GACNNNGTC	2 cut(s)	132, 1000
PkrI	GCNGC	2 cut(s)	58, 925
Ppu21I	YACGTR	1 cut(s)	700
PspN4I	GGNNCC	2 cut(s)	28, 73
PspPI	GGNCC	1 cut(s)	878
PstI	CTGCAG	1 cut(s)	670
PsuI	RGATCY	4 cut(s)	26, 71, 688, 747
PsyI	GACNNNGTC	2 cut(s)	132, 1000
RruI	TCGCGA	1 cut(s)	150
RsaI	GTAC	1 cut(s)	513
RsaNI	GTAC	1 cut(s)	512
RseI	CAYNNNNRTG	1 cut(s)	1018
SalI	GTCGAC	1 cut(s)	1074
SapI	GCTCTTC	1 cut(s)	498
SaqAI	TTAA	3 cut(s)	446, 716, 1031
SatI	GCNGC	2 cut(s)	57, 924
Sau3AI	GATC	9 cut(s)	26, 71, 151, 540, 621, 640, 688, 747, 865
Sau96I	GGNCC	1 cut(s)	878
SbfI	CCTGCAGG	1 cut(s)	670
ScrFI	CCNGG	1 cut(s)	960
SdaI	CCTGCAGG	1 cut(s)	670
SfaNI	GCATC	2 cut(s)	68, 617
SfcI	CTRYAG	1 cut(s)	666
Sfr274I	CTCGAG	1 cut(s)	273
SfuI	TTCGAA	1 cut(s)	266
SinI	GGWCC	1 cut(s)	878
SlaI	CTCGAG	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	1018
SmlI	CTYRAG	2 cut(s)	273, 528
SmoI	CTYRAG	2 cut(s)	273, 528
SnaBI	TACGTA	1 cut(s)	700
Sse8387I	CCTGCAGG	1 cut(s)	670
Sse9I	AATT	2 cut(s)	302, 395
SsiI	CCGC	5 cut(s)	30, 57, 251, 771, 923
SspMI	CTAG	3 cut(s)	126, 333, 602
StyD4I	CCNGG	1 cut(s)	958
StyI	CCWWGG	2 cut(s)	208, 332
TaaI	ACNGT	4 cut(s)	122, 442, 1020, 1066
TaiI	ACGT	7 cut(s)	202, 244, 426, 573, 702, 792, 944
TaqI	TCGA	9 cut(s)	156, 177, 266, 274, 306, 464, 786, 1059, 1075
TasI	AATT	2 cut(s)	302, 395
TauI	GCSGC	2 cut(s)	59, 926
Tru1I	TTAA	3 cut(s)	446, 716, 1031
Tru9I	TTAA	3 cut(s)	446, 716, 1031
TseFI	GTSAC	2 cut(s)	242, 1011
Tsp45I	GTSAC	2 cut(s)	242, 1011
TspDTI	ATGAA	2 cut(s)	39, 388
TspGWI	ACGGA	2 cut(s)	314, 423
Tth111I	GACNNNGTC	2 cut(s)	132, 1000
VpaK11BI	GGWCC	1 cut(s)	878
XapI	RAATTY	2 cut(s)	302, 395
XhoI	CTCGAG	1 cut(s)	273
XmaJI	CCTAGG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	1075
XmnI	GAANNNNTTC	1 cut(s)	381
XspI	CTAG	3 cut(s)	126, 333, 602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.