Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0012915

Physical Location & Seq

Genomic Coordinates Forward (+)

4290470 .. 4291241

Gene Structure 772 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g05450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTGGATATTAAAAAAAAAAAAAGCTCTCTTCCCCTCCCTCTTCTCTTCCCCGATCTGTCCAACTCCTCCCTCTTCACCCCCTCCCTTCTTTCTCCACAGATCAACCTTCACCCACCCTAACCCAAACTACGCCGCCCTCGTCGCCTTCCTCACCGCCATCCATCGTCCAAAACCACCGCCACCGCCACCGCCGCAGAAAAGCCCATCAAGATCCAACACTTCGACCTACAGTGATCTTGTTGCCGCCACCAATGGCTTCTCCAACCATAAGCTTTTGGGCAAAGGCAGCCATGGCTACGTCTACAAAGCTATGCTCCGCGGCCTTCTCTTTACTGTCAAAAGACCCTCCAGAGCTCACAGCCAGACTCTCCGACCCAACTCGTGTTCTGGGCCGGAGACCGCCAACGAGGTCGACAACGAGATCGAGATCTTGTCCAAGATTCAGAGTCCAAGGCTGGTCAATCTTTTGGGGTTTTCGAATGATTCGAAAGACAGGCTTTTGGTGGTGGAGTTCATGAGCAACGGTACGCTGTATGATGTTTTACATTCCAGTGCGAATCAGCCTCCTAATTGGGGTTGTAGGATTAAATTAGCTTTGCAAACTGCTAAGGCAATTGACATTTTATATTCATCGAGCCCACCTGTAATTCATAGAGATTTTAAGTCTGCAAATGTTTTGATTGTTCGTAATTACAATGCCCGGTTGGGGGTTGTGAGAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

242

Amino Acids

26.65

Weight (kDa)

10.16

Isoelectric Point (pI)

59.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51990
fragaria_vesca	FvH4_7g01890
malus_domestica	MD02G1299900.v1.1 MD07G1025000.v1.1
prunus_persica	Prupe.2G024700_v2.0.a1
pyrus_communis	pycom02g25190 pycom03g05450 pycom07g01930
rosa_chinensis	RchiOBHm_Chr1g0318491
rosa_laevigata	RLG00000030533
rosa_multiflora	Rmu_co8489629.1_g000001
rosa_roxburghii	Rroxscaffold_4G00329110
rosa_rugosa	Rorug01G0021700
rosa_samantha	Rh1AG034100 Rh1BG030200 Rh1CG033600 Rh1DG037000
rosa_wichuraiana	Rw1G002710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	303, 414
AccII	CGCG	1 cut(s)	321
AclWI	GGATC	1 cut(s)	207
AfaI	GTAC	1 cut(s)	529
AfiI	CCNNNNNNNGG	3 cut(s)	575, 708, 709
AluBI	AGCT	5 cut(s)	26, 274, 311, 356, 596
AluI	AGCT	5 cut(s)	26, 274, 311, 356, 596
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	392
AlwI	GGATC	1 cut(s)	207
AoxI	GGCC	2 cut(s)	322, 392
ApeKI	GCWGC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	392
AsuC2I	CCSGG	1 cut(s)	703
AsuHPI	GGTGA	3 cut(s)	69, 103, 145
AsuII	TTCGAA	2 cut(s)	479, 488
BanII	GRGCYC	2 cut(s)	358, 641
BauI	CACGAG	1 cut(s)	382
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	300
BccI	CCATC	3 cut(s)	167, 171, 214
BcnI	CCSGG	1 cut(s)	703
BcoDI	GTCTC	1 cut(s)	392
BfmI	CTRYAG	1 cut(s)	229
BglII	AGATCT	1 cut(s)	429
BisI	GCNGC	5 cut(s)	135, 194, 246, 289, 322
BlsI	GCNGC	5 cut(s)	136, 195, 247, 290, 323
Bme1390I	CCNGG	1 cut(s)	703
BmgT120I	GGNCC	1 cut(s)	392
BmrFI	CCNGG	1 cut(s)	703
BpmI	CTGGAG	1 cut(s)	334
Bpu10I	CCTNAGC	1 cut(s)	609
Bpu14I	TTCGAA	2 cut(s)	479, 488
BpuMI	CCSGG	1 cut(s)	703
BsaBI	GATNNNNATC	1 cut(s)	428
BsaI	GGTCTC	1 cut(s)	392
BsaJI	CCNNGG	3 cut(s)	292, 319, 452
Bsc4I	CCNNNNNNNGG	3 cut(s)	575, 708, 709
Bse1I	ACTGG	1 cut(s)	552
Bse8I	GATNNNNATC	1 cut(s)	428
BseDI	CCNNGG	3 cut(s)	292, 319, 452
BseGI	GGATG	1 cut(s)	159
BseJI	GATNNNNATC	1 cut(s)	428
BseLI	CCNNNNNNNGG	3 cut(s)	575, 708, 709
BseNI	ACTGG	1 cut(s)	552
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	300
Bsh1236I	CGCG	1 cut(s)	321
BshFI	GGCC	2 cut(s)	324, 394
BsiHKAI	GWGCWC	1 cut(s)	358
BsiSI	CCGG	2 cut(s)	395, 703
BslI	CCNNNNNNNGG	3 cut(s)	575, 708, 709
BsmAI	GTCTC	1 cut(s)	392
BsnI	GGCC	2 cut(s)	324, 394
Bso31I	GGTCTC	1 cut(s)	392
Bsp119I	TTCGAA	2 cut(s)	479, 488
Bsp1286I	GDGCHC	2 cut(s)	358, 641
Bsp143I	GATC	6 cut(s)	54, 101, 212, 235, 423, 429
Bsp19I	CCATGG	1 cut(s)	292
BspANI	GGCC	2 cut(s)	324, 394
BspFNI	CGCG	1 cut(s)	321
BspHI	TCATGA	1 cut(s)	516
BspPI	GGATC	1 cut(s)	207
BspT104I	TTCGAA	2 cut(s)	479, 488
BspTNI	GGTCTC	1 cut(s)	392
BsrI	ACTGG	1 cut(s)	552
BssECI	CCNNGG	3 cut(s)	292, 319, 452
BssMI	GATC	6 cut(s)	54, 101, 212, 235, 423, 429
BssSI	CACGAG	1 cut(s)	382
BssT1I	CCWWGG	2 cut(s)	292, 452
Bst2BI	CACGAG	1 cut(s)	382
Bst4CI	ACNGT	3 cut(s)	233, 337, 527
Bst6I	CTCTTC	4 cut(s)	35, 47, 52, 79
BstBI	TTCGAA	2 cut(s)	479, 488
BstDEI	CTNAG	1 cut(s)	609
BstDSI	CCRYGG	2 cut(s)	292, 319
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	1 cut(s)	321
BstKTI	GATC	6 cut(s)	57, 104, 215, 238, 426, 432
BstMAI	GTCTC	1 cut(s)	392
BstMBI	GATC	6 cut(s)	54, 101, 212, 235, 423, 429
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 193, 288, 294
BstSCI	CCNGG	1 cut(s)	701
BstSFI	CTRYAG	1 cut(s)	229
BstUI	CGCG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	300
BstX2I	RGATCY	2 cut(s)	212, 429
BstYI	RGATCY	2 cut(s)	212, 429
BsuRI	GGCC	2 cut(s)	324, 394
BtgI	CCRYGG	2 cut(s)	292, 319
BtsCI	GGATG	1 cut(s)	159
BtsIMutI	CAGTG	2 cut(s)	238, 559
CciI	TCATGA	1 cut(s)	516
Cfr13I	GGNCC	1 cut(s)	392
Cfr42I	CCGCGG	1 cut(s)	322
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	2 cut(s)	293, 517
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	1 cut(s)	609
DpnI	GATC	6 cut(s)	56, 103, 214, 237, 425, 431
DpnII	GATC	6 cut(s)	54, 101, 212, 235, 423, 429
Eam1104I	CTCTTC	4 cut(s)	35, 47, 52, 79
EarI	CTCTTC	4 cut(s)	35, 47, 52, 79
Ecl136II	GAGCTC	1 cut(s)	356
Eco130I	CCWWGG	2 cut(s)	292, 452
Eco24I	GRGCYC	2 cut(s)	358, 641
Eco31I	GGTCTC	1 cut(s)	392
Eco53kI	GAGCTC	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	356
EcoT14I	CCWWGG	2 cut(s)	292, 452
EcoT38I	GRGCYC	2 cut(s)	358, 641
ErhI	CCWWGG	2 cut(s)	292, 452
FaeI	CATG	2 cut(s)	296, 520
FaiI	YATR	7 cut(s)	270, 294, 314, 518, 537, 628, 654
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FatI	CATG	2 cut(s)	292, 516
FblI	GTMKAC	2 cut(s)	303, 414
Fnu4HI	GCNGC	5 cut(s)	135, 194, 246, 289, 322
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	2 cut(s)	358, 641
Fsp4HI	GCNGC	5 cut(s)	135, 194, 246, 289, 322
GluI	GCNGC	5 cut(s)	135, 194, 246, 289, 322
GsuI	CTGGAG	1 cut(s)	334
HaeIII	GGCC	2 cut(s)	324, 394
HapII	CCGG	2 cut(s)	395, 703
Hin1II	CATG	2 cut(s)	296, 520
HincII	GTYRAC	1 cut(s)	415
HindII	GTYRAC	1 cut(s)	415
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	5 cut(s)	367, 442, 448, 485, 559
HpaII	CCGG	2 cut(s)	395, 703
HphI	GGTGA	3 cut(s)	69, 103, 145
Hpy166II	GTNNAC	2 cut(s)	304, 415
Hpy188I	TCNGA	2 cut(s)	374, 447
Hpy188III	TCNNGA	4 cut(s)	210, 351, 427, 517
Hpy8I	GTNNAC	2 cut(s)	304, 415
Hpy99I	CGWCG	1 cut(s)	146
HpyAV	CCTTC	4 cut(s)	97, 118, 157, 335
HpyCH4III	ACNGT	3 cut(s)	233, 337, 527
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	2 cut(s)	601, 671
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 193, 288, 294
HpyF3I	CTNAG	1 cut(s)	609
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	2 cut(s)	296, 520
KspI	CCGCGG	1 cut(s)	322
Kzo9I	GATC	6 cut(s)	54, 101, 212, 235, 423, 429
LmnI	GCTCC	1 cut(s)	321
LpnPI	CCDG	9 cut(s)	364, 375, 377, 408, 443, 481, 565, 657, 716
Lsp1109I	GCAGC	1 cut(s)	300
MaeII	ACGT	1 cut(s)	300
MalI	GATC	6 cut(s)	56, 103, 214, 237, 425, 431
MboI	GATC	6 cut(s)	54, 101, 212, 235, 423, 429
MboII	GAAGA	4 cut(s)	22, 34, 39, 66
MfeI	CAATTG	1 cut(s)	615
MflI	RGATCY	2 cut(s)	212, 429
MhlI	GDGCHC	2 cut(s)	358, 641
MluCI	AATT	5 cut(s)	571, 590, 615, 648, 691
MlyI	GAGTC	2 cut(s)	361, 457
MmeI	TCCRAC	4 cut(s)	86, 240, 288, 397
MseI	TTAA	3 cut(s)	11, 588, 663
MslI	CAYNNNNRTG	1 cut(s)	552
MspA1I	CMGCKG	1 cut(s)	321
MspI	CCGG	2 cut(s)	395, 703
MspR9I	CCNGG	1 cut(s)	703
MunI	CAATTG	1 cut(s)	615
MvnI	CGCG	1 cut(s)	321
MwoI	GCNNNNNNNGC	4 cut(s)	143, 193, 288, 294
NciI	CCSGG	1 cut(s)	703
NcoI	CCATGG	1 cut(s)	292
NdeII	GATC	6 cut(s)	54, 101, 212, 235, 423, 429
NlaIII	CATG	2 cut(s)	296, 520
NspV	TTCGAA	2 cut(s)	479, 488
PagI	TCATGA	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	2 cut(s)	138, 485
PfeI	GAWTC	3 cut(s)	442, 485, 559
PkrI	GCNGC	5 cut(s)	136, 195, 247, 290, 323
PleI	GAGTC	2 cut(s)	361, 456
PpsI	GAGTC	2 cut(s)	361, 456
Psp124BI	GAGCTC	1 cut(s)	358
PspPI	GGNCC	1 cut(s)	392
PsuI	RGATCY	2 cut(s)	212, 429
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
RseI	CAYNNNNRTG	1 cut(s)	552
SacI	GAGCTC	1 cut(s)	358
SacII	CCGCGG	1 cut(s)	322
SalI	GTCGAC	1 cut(s)	413
SaqAI	TTAA	3 cut(s)	11, 588, 663
SatI	GCNGC	5 cut(s)	135, 194, 246, 289, 322
Sau3AI	GATC	6 cut(s)	54, 101, 212, 235, 423, 429
Sau96I	GGNCC	1 cut(s)	392
SchI	GAGTC	2 cut(s)	361, 457
ScrFI	CCNGG	1 cut(s)	703
SduI	GDGCHC	2 cut(s)	358, 641
SfcI	CTRYAG	1 cut(s)	229
Sfr303I	CCGCGG	1 cut(s)	322
SfuI	TTCGAA	2 cut(s)	479, 488
SgrBI	CCGCGG	1 cut(s)	322
SmiMI	CAYNNNNRTG	1 cut(s)	552
Sse9I	AATT	5 cut(s)	571, 590, 615, 648, 691
SstI	GAGCTC	1 cut(s)	358
StyD4I	CCNGG	1 cut(s)	701
StyI	CCWWGG	2 cut(s)	292, 452
TaaI	ACNGT	3 cut(s)	233, 337, 527
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	6 cut(s)	224, 414, 426, 479, 488, 635
TasI	AATT	5 cut(s)	571, 590, 615, 648, 691
TauI	GCSGC	4 cut(s)	137, 196, 248, 324
TfiI	GAWTC	3 cut(s)	442, 485, 559
Tru1I	TTAA	3 cut(s)	11, 588, 663
Tru9I	TTAA	3 cut(s)	11, 588, 663
TscAI	CASTG	2 cut(s)	238, 559
TseI	GCWGC	1 cut(s)	288
TspDTI	ATGAA	3 cut(s)	505, 621, 641
TspRI	CASTG	2 cut(s)	238, 559
XmiI	GTMKAC	2 cut(s)	303, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.