FvH4_7g01890

Serine threonine-protein kinase-like protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
2269266 .. 2270744
1479 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g01890.t1

Sequence Viewer

Length: 1479 bp
ATGGGGTACCTTTCTTGCAAAGCTGAATCTGCTATCTCCGTCGCCAATTCCCAGACCCCATCGTCAGCATCATCATCATCCCATGAGAAACCCATCAAGATCCAACACTTCGATTACAGTGATCTCGTGGCTGCCACCAATGGCTTCTCTGATCAGAAGCTTCTAGGCAGAGGCAGCCATGGCTATGTCTACAAAGCTGTACTCCGTGGCCGCCTTGTTGCCGTCAAGAGACCCTCCAGTGCTCGCTGCCAACTTCCCAGACCCACCTCGGTTTCTGGGCCTGAACCCACCAACGAGGTCGACAACGAGATCGAGATCTTGTCAAAGATTCATAGCCCAAGACTTGTCAATCTTCTTGGGTTCTCCAACGACTCGAAAGATAGGCTGTTGGTGGTGGAGTTCATGAGCAACGGTACTCTCTATGATGTCTTACATTCTTCTAGTACTAATAACAATAAGCCTCCCAGTTGGGGAAGGAGAATTAGATTAGCTTTGCAAACTGCTAAGGCCATTGACACTTTACATTCATCAAACCCACCTGTAATTCATAGAGATATTAAGTCTGCAAATGTTCTTATTGACCGTAGTTACAATGCTCGGTTGGGGGATTTTGGGTTGGCTTTAAGGTGCCATTTGGATGACTATAAGCTCCGGTCAACCCCGCCGGCGGGAACTATGGGGTATTTGGATCCTTGTTATGTGACCCCGGATAATTTGAGCACTAAGACTGATGTGTTTAGTTTTGGGATTTTGTTGTTGGAGATTATAAGTGGGAGGAAGGCTATTGATGTCGGGTTTTCGCCACCTTCAATTGTGGATTGGGCTATTCCGCTTATAAAGAGAGGGAAGCTAATTACTGTTTATGATCCTAGGATTGTGCCTCCTAAAGACCCTGTTGTGAGGAAGCAGCTGGCTGTCATTGCAGCAAAATGTGTGAGGTCTTGTAGGGAGCGGAGGCCGTCGATGAAGGAGGTGGTGGTTTGGCTTACTGGGTTGAGTAAATTGGTCCCTCTGCATTCATGGAATAATTTTAACAATCCATGTACGATGGTGGAGACCATGGGGCAACCGGTTGAATCAAGGGCTTCACAGATGAATTTGAAGCCACATGGGTTCGGAGAAGAGCATTTTGAAAGCATGGAAGCTAAGTTGGCTAGGCAAGCTATGAGGAATTCGAGGAGGGTTTATTCTGATTTGGGGTTTAGTAGCAATTTGATGGAGCTTATGGCTGGTACTGATGAAGAGTCTGAATTTCGGGGTAAGGGAGATGGACACGAGCCCAATTCTAAGCCAGTAAATCGGGTTTCTAGATTTAGCAGTGCAAGATACTTTAGCCGAGGGAGTAATCAGTCAACGCCTAGTAATGGGAGAGAAGTCCCTCATTTGAATCGAAATCATTCATTCGGACAGAGGTCATTTATATGTTCAAAAAGAGATGATACCATTTCGCATGCAAGTGATATCCAGTTTGCTGCATAA

Protein Analysis

493

Amino Acids

54.54

Weight (kDa)

9.48

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 50 - 326 2.1e-35 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 52 - 326 3.7e-35 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012915)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 767, 836
AasI GACNNNNNNGTC 1 cut(s) 61
Acc65I GGTACC 1 cut(s) 6
AccB1I GGYRCC 2 cut(s) 6, 627
AccBSI CCGCTC 1 cut(s) 952
AccI GTMKAC 2 cut(s) 189, 300
AciI CCGC 5 cut(s) 211, 662, 668, 830, 952
AclWI GGATC 4 cut(s) 94, 683, 696, 860
AcoI YGGCCR 1 cut(s) 208
AcsI RAATTY 3 cut(s) 1096, 1171, 1250
AfaI GTAC 6 cut(s) 8, 201, 415, 445, 1045, 1234
AfiI CCNNNNNNNGG 4 cut(s) 470, 667, 668, 1364
AgeI ACCGGT 1 cut(s) 1069
AgsI TTSAA 6 cut(s) 810, 1076, 1102, 1133, 1387, 1428
Alw21I GWGCWC 2 cut(s) 244, 722
Alw26I GTCTC 2 cut(s) 223, 1049
AlwI GGATC 4 cut(s) 94, 683, 696, 860
AoxI GGCC 4 cut(s) 208, 278, 507, 956
ApeKI GCWGC 6 cut(s) 131, 174, 246, 907, 923, 1472
ApoI RAATTY 3 cut(s) 1096, 1171, 1250
AsiGI ACCGGT 1 cut(s) 1069
Asp700I GAANNNNTTC 1 cut(s) 1396
Asp718I GGTACC 1 cut(s) 6
AspA2I CCTAGG 1 cut(s) 869
AspS9I GGNCC 2 cut(s) 278, 1006
AsuC2I CCSGG 1 cut(s) 707
AvaII GGWCC 1 cut(s) 1006
AvrII CCTAGG 1 cut(s) 869
BamHI GGATCC 1 cut(s) 688
BanI GGYRCC 2 cut(s) 6, 627
BanII GRGCYC 1 cut(s) 1281
BauI CACGAG 2 cut(s) 125, 1274
Bbv12I GWGCWC 2 cut(s) 244, 722
BbvI GCAGC 6 cut(s) 118, 186, 233, 919, 935, 1459
BccI CCATC 5 cut(s) 67, 101, 1042, 1210, 1262
BceAI ACGGC 2 cut(s) 206, 943
BclI TGATCA 1 cut(s) 151
BcnI CCSGG 1 cut(s) 707
BcoDI GTCTC 2 cut(s) 223, 1049
BfaI CTAG 6 cut(s) 164, 441, 870, 1155, 1308, 1359
BglII AGATCT 1 cut(s) 315
BisI GCNGC 7 cut(s) 132, 175, 211, 247, 908, 924, 1473
BlnI CCTAGG 1 cut(s) 869
BlsI GCNGC 7 cut(s) 133, 176, 212, 248, 909, 925, 1474
BmcAI AGTACT 1 cut(s) 445
Bme1390I CCNGG 1 cut(s) 707
Bme18I GGWCC 1 cut(s) 1006
BmgT120I GGNCC 2 cut(s) 278, 1006
BmiI GGNNCC 4 cut(s) 8, 629, 690, 1008
BmrFI CCNGG 1 cut(s) 707
BmrI ACTGGG 2 cut(s) 459, 999
BmsI GCATC 1 cut(s) 77
BmuI ACTGGG 2 cut(s) 459, 999
BoxI GACNNNNGTC 1 cut(s) 1411
BpmI CTGGAG 1 cut(s) 220
Bpu10I CCTNAGC 1 cut(s) 504
BpuMI CCSGG 1 cut(s) 707
BsaBI GATNNNNATC 1 cut(s) 314
BsaI GGTCTC 2 cut(s) 223, 1049
BsaJI CCNNGG 7 cut(s) 178, 205, 267, 705, 869, 1059, 1336
BsaWI WCCGGW 2 cut(s) 651, 1069
Bsc4I CCNNNNNNNGG 4 cut(s) 470, 667, 668, 1364
Bse118I RCCGGY 2 cut(s) 664, 1069
Bse1I ACTGG 5 cut(s) 237, 465, 994, 1292, 1465
Bse3DI GCAATG 1 cut(s) 918
Bse8I GATNNNNATC 1 cut(s) 314
BseDI CCNNGG 7 cut(s) 178, 205, 267, 705, 869, 1059, 1336
BseGI GGATG 2 cut(s) 77, 643
BseJI GATNNNNATC 1 cut(s) 314
BseLI CCNNNNNNNGG 4 cut(s) 470, 667, 668, 1364
BseMI GCAATG 1 cut(s) 918
BseNI ACTGG 5 cut(s) 237, 465, 994, 1292, 1465
BseRI GAGGAG 1 cut(s) 1192
BseXI GCAGC 6 cut(s) 118, 186, 233, 919, 935, 1459
BshFI GGCC 4 cut(s) 210, 280, 509, 958
BshNI GGYRCC 2 cut(s) 6, 627
BshTI ACCGGT 1 cut(s) 1069
BsiHKAI GWGCWC 2 cut(s) 244, 722
BsiSI CCGG 4 cut(s) 652, 665, 707, 1070
BslFI GGGAC 2 cut(s) 992, 1361
BslI CCNNNNNNNGG 4 cut(s) 470, 667, 668, 1364
BsmAI GTCTC 2 cut(s) 223, 1049
BsmFI GGGAC 2 cut(s) 992, 1361
BsmI GAATGC 1 cut(s) 1015
BsnI GGCC 4 cut(s) 210, 280, 509, 958
Bso31I GGTCTC 2 cut(s) 223, 1049
Bsp1286I GDGCHC 3 cut(s) 244, 722, 1281
Bsp143I GATC 7 cut(s) 99, 121, 151, 309, 315, 688, 865
Bsp19I CCATGG 2 cut(s) 178, 1059
BspACI CCGC 5 cut(s) 211, 662, 668, 830, 952
BspANI GGCC 4 cut(s) 210, 280, 509, 958
BspHI TCATGA 1 cut(s) 402
BspLI GGNNCC 4 cut(s) 8, 629, 690, 1008
BspPI GGATC 4 cut(s) 94, 683, 696, 860
BspQI GCTCTTC 1 cut(s) 1116
BspT107I GGYRCC 2 cut(s) 6, 627
BspTNI GGTCTC 2 cut(s) 223, 1049
BsrBI CCGCTC 1 cut(s) 952
BsrDI GCAATG 1 cut(s) 918
BsrFI RCCGGY 2 cut(s) 664, 1069
BsrI ACTGG 5 cut(s) 237, 465, 994, 1292, 1465
BssAI RCCGGY 2 cut(s) 664, 1069
BssECI CCNNGG 7 cut(s) 178, 205, 267, 705, 869, 1059, 1336
BssMI GATC 7 cut(s) 99, 121, 151, 309, 315, 688, 865
BssSI CACGAG 2 cut(s) 125, 1274
BssT1I CCWWGG 3 cut(s) 178, 869, 1059
Bst2BI CACGAG 2 cut(s) 125, 1274
Bst4CI ACNGT 4 cut(s) 119, 413, 584, 859
Bst6I CTCTTC 2 cut(s) 1116, 1236
BstC8I GCNNGC 5 cut(s) 244, 666, 912, 1161, 1452
BstDEI CTNAG 4 cut(s) 504, 723, 1146, 1287
BstDSI CCRYGG 3 cut(s) 178, 205, 1059
BstF5I GGATG 2 cut(s) 77, 643
BstKTI GATC 7 cut(s) 102, 124, 154, 312, 318, 691, 868
BstMAI GTCTC 2 cut(s) 223, 1049
BstMBI GATC 7 cut(s) 99, 121, 151, 309, 315, 688, 865
BstMWI GCNNNNNNNGC 6 cut(s) 29, 174, 180, 920, 1151, 1160
BstNSI RCATGY 1 cut(s) 1454
BstPAI GACNNNNGTC 1 cut(s) 1411
BstSCI CCNGG 1 cut(s) 705
BstV1I GCAGC 6 cut(s) 118, 186, 233, 919, 935, 1459
BstX2I RGATCY 3 cut(s) 99, 315, 688
BstYI RGATCY 3 cut(s) 99, 315, 688
BsuRI GGCC 4 cut(s) 210, 280, 509, 958
BtgI CCRYGG 3 cut(s) 178, 205, 1059
BtsCI GGATG 2 cut(s) 77, 643
BtsI GCAGTG 1 cut(s) 1324
BtsIMutI CAGTG 3 cut(s) 124, 244, 1324
Cac8I GCNNGC 5 cut(s) 244, 666, 912, 1161, 1452
CciI TCATGA 1 cut(s) 402
Cfr10I RCCGGY 2 cut(s) 664, 1069
Cfr13I GGNCC 2 cut(s) 278, 1006
Csp6I GTAC 6 cut(s) 7, 200, 414, 444, 1044, 1233
CspAI ACCGGT 1 cut(s) 1069
CviAII CATG 9 cut(s) 83, 179, 403, 1020, 1041, 1060, 1109, 1138, 1451
CviQI GTAC 6 cut(s) 7, 200, 414, 444, 1044, 1233
DdeI CTNAG 4 cut(s) 504, 723, 1146, 1287
DpnI GATC 7 cut(s) 101, 123, 153, 311, 317, 690, 867
DpnII GATC 7 cut(s) 99, 121, 151, 309, 315, 688, 865
DrdI GACNNNNNNGTC 1 cut(s) 61
DseDI GACNNNNNNGTC 1 cut(s) 61
EaeI YGGCCR 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 1116, 1236
EarI CTCTTC 2 cut(s) 1116, 1236
Eco130I CCWWGG 3 cut(s) 178, 869, 1059
Eco24I GRGCYC 1 cut(s) 1281
Eco31I GGTCTC 2 cut(s) 223, 1049
Eco32I GATATC 1 cut(s) 1462
Eco47I GGWCC 1 cut(s) 1006
EcoRI GAATTC 1 cut(s) 1171
EcoRV GATATC 1 cut(s) 1462
EcoT14I CCWWGG 3 cut(s) 178, 869, 1059
EcoT38I GRGCYC 1 cut(s) 1281
ErhI CCWWGG 3 cut(s) 178, 869, 1059
FaeI CATG 9 cut(s) 86, 182, 406, 1023, 1044, 1063, 1112, 1141, 1454
FaqI GGGAC 2 cut(s) 992, 1361
FatI CATG 9 cut(s) 82, 178, 402, 1019, 1040, 1059, 1108, 1137, 1450
FauI CCCGC 2 cut(s) 661, 669
FbaI TGATCA 1 cut(s) 151
FblI GTMKAC 2 cut(s) 189, 300
Fnu4HI GCNGC 7 cut(s) 132, 175, 211, 247, 908, 924, 1473
FokI GGATG 2 cut(s) 64, 650
FriOI GRGCYC 1 cut(s) 1281
Fsp4HI GCNGC 7 cut(s) 132, 175, 211, 247, 908, 924, 1473
FspBI CTAG 6 cut(s) 164, 441, 870, 1155, 1308, 1359
GluI GCNGC 7 cut(s) 132, 175, 211, 247, 908, 924, 1473
GsuI CTGGAG 1 cut(s) 220
HaeIII GGCC 4 cut(s) 210, 280, 509, 958
HapII CCGG 4 cut(s) 652, 665, 707, 1070
Hin1II CATG 9 cut(s) 86, 182, 406, 1023, 1044, 1063, 1112, 1141, 1454
HincII GTYRAC 3 cut(s) 301, 657, 1353
HindII GTYRAC 3 cut(s) 301, 657, 1353
HindIII AAGCTT 1 cut(s) 158
HinfI GANTC 6 cut(s) 26, 328, 371, 1076, 1244, 1387
HpaII CCGG 4 cut(s) 652, 665, 707, 1070
Hpy166II GTNNAC 4 cut(s) 190, 301, 657, 1353
Hpy188I TCNGA 6 cut(s) 151, 156, 1118, 1192, 1249, 1406
Hpy188III TCNNGA 5 cut(s) 97, 226, 313, 403, 1308
Hpy8I GTNNAC 4 cut(s) 190, 301, 657, 1353
Hpy99I CGWCG 2 cut(s) 44, 964
HpyAV CCTTC 4 cut(s) 468, 772, 816, 961
HpyCH4III ACNGT 4 cut(s) 119, 413, 584, 859
HpyCH4V TGCA 8 cut(s) 18, 496, 566, 923, 1015, 1322, 1454, 1475
HpyF10VI GCNNNNNNNGC 6 cut(s) 29, 174, 180, 920, 1151, 1160
HpyF3I CTNAG 4 cut(s) 504, 723, 1146, 1287
Hsp92II CATG 9 cut(s) 86, 182, 406, 1023, 1044, 1063, 1112, 1141, 1454
KpnI GGTACC 1 cut(s) 10
KroI GCCGGC 1 cut(s) 664
KroNI GCCGGC 1 cut(s) 666
Ksp22I TGATCA 1 cut(s) 151
Kzo9I GATC 7 cut(s) 99, 121, 151, 309, 315, 688, 865
LguI GCTCTTC 1 cut(s) 1116
LmnI GCTCC 3 cut(s) 654, 949, 1219
Lsp1109I GCAGC 6 cut(s) 118, 186, 233, 919, 935, 1459
LweI GCATC 1 cut(s) 77
MaeI CTAG 6 cut(s) 164, 441, 870, 1155, 1308, 1359
MaeIII GTNAC 2 cut(s) 587, 700
MalI GATC 7 cut(s) 101, 123, 153, 311, 317, 690, 867
MbiI CCGCTC 1 cut(s) 952
MboI GATC 7 cut(s) 99, 121, 151, 309, 315, 688, 865
MboII GAAGA 4 cut(s) 344, 429, 1133, 1253
MfeI CAATTG 1 cut(s) 810
MflI RGATCY 3 cut(s) 99, 315, 688
MhlI GDGCHC 3 cut(s) 244, 722, 1281
MlyI GAGTC 2 cut(s) 365, 1253
MmeI TCCRAC 3 cut(s) 127, 390, 738
MreI CGCCGGCG 1 cut(s) 664
MroNI GCCGGC 1 cut(s) 664
MroXI GAANNNNTTC 1 cut(s) 1396
MseI TTAA 3 cut(s) 558, 623, 1032
MslI CAYNNNNRTG 4 cut(s) 183, 636, 1420, 1455
MspA1I CMGCKG 1 cut(s) 910
MspI CCGG 4 cut(s) 652, 665, 707, 1070
MspR9I CCNGG 1 cut(s) 707
MunI CAATTG 1 cut(s) 810
Mva1269I GAATGC 1 cut(s) 1015
MwoI GCNNNNNNNGC 6 cut(s) 29, 174, 180, 920, 1151, 1160
NaeI GCCGGC 1 cut(s) 666
NciI CCSGG 1 cut(s) 707
NcoI CCATGG 2 cut(s) 178, 1059
NdeII GATC 7 cut(s) 99, 121, 151, 309, 315, 688, 865
NgoMIV GCCGGC 1 cut(s) 664
NlaIII CATG 9 cut(s) 86, 182, 406, 1023, 1044, 1063, 1112, 1141, 1454
NlaIV GGNNCC 4 cut(s) 8, 629, 690, 1008
NmeAIII GCCGAG 1 cut(s) 1361
NmuCI GTSAC 1 cut(s) 700
NspI RCATGY 1 cut(s) 1454
PaeI GCATGC 1 cut(s) 1454
PagI TCATGA 1 cut(s) 402
PciSI GCTCTTC 1 cut(s) 1116
PctI GAATGC 1 cut(s) 1015
PdiI GCCGGC 1 cut(s) 666
PdmI GAANNNNTTC 1 cut(s) 1396
PfeI GAWTC 4 cut(s) 26, 328, 1076, 1387
PinAI ACCGGT 1 cut(s) 1069
PkrI GCNGC 7 cut(s) 133, 176, 212, 248, 909, 925, 1474
PleI GAGTC 2 cut(s) 365, 1252
PpsI GAGTC 2 cut(s) 365, 1252
PshAI GACNNNNGTC 1 cut(s) 1411
PsiI TTATAA 2 cut(s) 767, 836
PspN4I GGNNCC 4 cut(s) 8, 629, 690, 1008
PspPI GGNCC 2 cut(s) 278, 1006
PsuI RGATCY 3 cut(s) 99, 315, 688
PvuII CAGCTG 1 cut(s) 910
RsaI GTAC 6 cut(s) 8, 201, 415, 445, 1045, 1234
RsaNI GTAC 6 cut(s) 7, 200, 414, 444, 1044, 1233
RseI CAYNNNNRTG 4 cut(s) 183, 636, 1420, 1455
SalI GTCGAC 1 cut(s) 299
SapI GCTCTTC 1 cut(s) 1116
SaqAI TTAA 3 cut(s) 558, 623, 1032
SatI GCNGC 7 cut(s) 132, 175, 211, 247, 908, 924, 1473
Sau3AI GATC 7 cut(s) 99, 121, 151, 309, 315, 688, 865
Sau96I GGNCC 2 cut(s) 278, 1006
ScaI AGTACT 1 cut(s) 445
SchI GAGTC 2 cut(s) 365, 1253
ScrFI CCNGG 1 cut(s) 707
SduI GDGCHC 3 cut(s) 244, 722, 1281
SfaNI GCATC 1 cut(s) 77
SgrAI CRCCGGYG 1 cut(s) 664
SinI GGWCC 1 cut(s) 1006
SmiMI CAYNNNNRTG 4 cut(s) 183, 636, 1420, 1455
SphI GCATGC 1 cut(s) 1454
SsiI CCGC 5 cut(s) 211, 662, 668, 830, 952
SspMI CTAG 6 cut(s) 164, 441, 870, 1155, 1308, 1359
StyD4I CCNGG 1 cut(s) 705
StyI CCWWGG 3 cut(s) 178, 869, 1059
TaaI ACNGT 4 cut(s) 119, 413, 584, 859
TaqI TCGA 7 cut(s) 111, 300, 312, 374, 962, 1175, 1390
TatI WGTACW 2 cut(s) 199, 443
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 4 cut(s) 26, 328, 1076, 1387
Tru1I TTAA 3 cut(s) 558, 623, 1032
Tru9I TTAA 3 cut(s) 558, 623, 1032
TscAI CASTG 3 cut(s) 124, 244, 1324
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 6 cut(s) 131, 174, 246, 907, 923, 1472
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 9 cut(s) 320, 391, 516, 536, 980, 1008, 1109, 1254, 1389
TspGWI ACGGA 2 cut(s) 28, 194
TspRI CASTG 3 cut(s) 124, 244, 1324
VpaK11BI GGWCC 1 cut(s) 1006
XapI RAATTY 3 cut(s) 1096, 1171, 1250
XbaI TCTAGA 1 cut(s) 1307
XceI RCATGY 1 cut(s) 1454
XmaJI CCTAGG 1 cut(s) 869
XmiI GTMKAC 2 cut(s) 189, 300
XmnI GAANNNNTTC 1 cut(s) 1396
XspI CTAG 6 cut(s) 164, 441, 870, 1155, 1308, 1359
ZrmI AGTACT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.