Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0012915

Physical Location & Seq

Genomic Coordinates Reverse (-)

1524822 .. 1525790

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g01930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGGGTACCTTTCCTGCAGAGCTCAATCAGCCATCTCCGTCGCCAATTCCCAAACATCATCGTCCAAAACCACCGCCATCGCCACCCCGGAAAACCCCATCAAGATCCAACACTTCGACTACAGTGATCTCGTCGCCGCCACCAATGGCTTCTCCGACCAGAAGCTTTTAGGCAAAGGCAGCCATGGCTACGTCTACAAAGCTGTGCTCCGCGGCCGTCTTGTTGCCGTCAAAAGACCCTCGAGAGCTCACAGCCAGAGACTCCGACCCACCTCGTCTTCTGGGCCGGAGACCGCCAACGAGGTCGACAACGAGCTCGAGATCGAGTCCAAGATTCAGAGTCCGAGGCTGGTCAATCTTTTGGGGTTTTCGAATGATTCGAAAGAAAGGCTTTTGGTGGTGGAGTTCATGAGCAACGGTACGCTGTACGATGTTTTACATTCGAGTACAAATCGGCCTCCGAATTGGGGTCGTAGGATTAGATTAGCTTTGCAAACTGCCAAGGCAATTGACATTTTACATTCATCGAACCCACCTGTAATTCATAGAGATATTAAGTCTGCTAATGTTTTGATTGATCGTAGTTACAATGCCCGGTTGGGGGATTTTGGATTGGCTCTGAGATACTGCCAGTTCGACGAGTATAGGCTCCGGTCCACCCCGCCGGCGGGGACGATGGGGTACTTGGACCCTTGCTATGTGACCCCTGACAATTTGAGTACTAAAACTGATGTTTTTAGTTTTGGGATTTTGTTGTTGGAGATTATAAGTGGTAGGAAGGCTATTGATGTTGGGCATTCTCCGCCTTCGATTGTTGATTGGGCCATCCCGCTTATAAAGCGAGGGAAGCTGATAACGGTTTATGATCCGCGAATTGTACCTCCTAAGGACCCTGTTGTGAGGAAGCAATTAGCTGTCATTGCAGCCAAGTTTGTGATCGATCTTGTAGGGAGCGTAGGCCATCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

323

Amino Acids

35.47

Weight (kDa)

9.64

Isoelectric Point (pI)

36.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	52 - 261	1.8e-34	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	54 - 259	2e-31	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51990
fragaria_vesca	FvH4_7g01890
malus_domestica	MD02G1299900.v1.1 MD07G1025000.v1.1
prunus_persica	Prupe.2G024700_v2.0.a1
pyrus_communis	pycom02g25190 pycom03g05450 pycom07g01930
rosa_chinensis	RchiOBHm_Chr1g0318491
rosa_laevigata	RLG00000030533
rosa_multiflora	Rmu_co8489629.1_g000001
rosa_roxburghii	Rroxscaffold_4G00329110
rosa_rugosa	Rorug01G0021700
rosa_samantha	Rh1AG034100 Rh1BG030200 Rh1CG033600 Rh1DG037000
rosa_wichuraiana	Rw1G002710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	767, 836
Acc65I	GGTACC	1 cut(s)	6
AccB1I	GGYRCC	1 cut(s)	6
AccI	GTMKAC	2 cut(s)	195, 306
AccII	CGCG	2 cut(s)	213, 871
AclWI	GGATC	2 cut(s)	100, 860
AcoI	YGGCCR	1 cut(s)	214
AfaI	GTAC	7 cut(s)	8, 421, 428, 448, 683, 721, 879
AfiI	CCNNNNNNNGG	5 cut(s)	467, 600, 601, 667, 668
AluBI	AGCT	8 cut(s)	23, 166, 203, 248, 316, 488, 850, 914
AluI	AGCT	8 cut(s)	23, 166, 203, 248, 316, 488, 850, 914
Alw21I	GWGCWC	4 cut(s)	25, 210, 250, 318
Alw26I	GTCTC	2 cut(s)	253, 284
AlwI	GGATC	2 cut(s)	100, 860
Ama87I	CYCGRG	2 cut(s)	241, 317
AoxI	GGCC	5 cut(s)	214, 284, 455, 822, 958
ApeKI	GCWGC	2 cut(s)	180, 923
Asp718I	GGTACC	1 cut(s)	6
AspS9I	GGNCC	5 cut(s)	284, 654, 688, 822, 889
AsuC2I	CCSGG	2 cut(s)	89, 595
AsuII	TTCGAA	2 cut(s)	371, 380
AvaI	CYCGRG	2 cut(s)	241, 317
AvaII	GGWCC	3 cut(s)	654, 688, 889
AxyI	CCTNAGG	1 cut(s)	885
BanI	GGYRCC	1 cut(s)	6
BanII	GRGCYC	3 cut(s)	25, 250, 318
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	4 cut(s)	25, 210, 250, 318
BbvI	GCAGC	2 cut(s)	192, 935
BccI	CCATC	5 cut(s)	41, 86, 107, 670, 833
BceAI	ACGGC	2 cut(s)	201, 212
BcnI	CCSGG	2 cut(s)	89, 595
BcoDI	GTCTC	2 cut(s)	253, 284
BfmI	CTRYAG	2 cut(s)	16, 121
BisI	GCNGC	4 cut(s)	138, 181, 214, 924
BlsI	GCNGC	4 cut(s)	139, 182, 215, 925
BmcAI	AGTACT	1 cut(s)	721
Bme1390I	CCNGG	2 cut(s)	89, 595
Bme18I	GGWCC	3 cut(s)	654, 688, 889
BmeT110I	CYCGRG	2 cut(s)	241, 317
BmgT120I	GGNCC	5 cut(s)	284, 654, 688, 822, 889
BmiI	GGNNCC	4 cut(s)	8, 650, 690, 891
BmrFI	CCNGG	2 cut(s)	89, 595
BpiI	GAAGAC	1 cut(s)	270
Bpu14I	TTCGAA	2 cut(s)	371, 380
BpuMI	CCSGG	2 cut(s)	89, 595
Bsa29I	ATCGAT	2 cut(s)	939, 964
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	5 cut(s)	87, 184, 211, 344, 501
BsaWI	WCCGGW	1 cut(s)	651
Bsc4I	CCNNNNNNNGG	5 cut(s)	467, 600, 601, 667, 668
Bse118I	RCCGGY	1 cut(s)	664
Bse1I	ACTGG	1 cut(s)	631
Bse21I	CCTNAGG	1 cut(s)	885
Bse3DI	GCAATG	1 cut(s)	918
BseCI	ATCGAT	2 cut(s)	939, 964
BseDI	CCNNGG	5 cut(s)	87, 184, 211, 344, 501
BseGI	GGATG	1 cut(s)	825
BseLI	CCNNNNNNNGG	5 cut(s)	467, 600, 601, 667, 668
BseMI	GCAATG	1 cut(s)	918
BseMII	CTCAG	1 cut(s)	611
BseNI	ACTGG	1 cut(s)	631
BseX3I	CGGCCG	1 cut(s)	214
BseXI	GCAGC	2 cut(s)	192, 935
Bsh1236I	CGCG	2 cut(s)	213, 871
Bsh1285I	CGRYCG	1 cut(s)	217
BshFI	GGCC	5 cut(s)	216, 286, 457, 824, 960
BshNI	GGYRCC	1 cut(s)	6
BshVI	ATCGAT	2 cut(s)	939, 964
BsiEI	CGRYCG	1 cut(s)	217
BsiHKAI	GWGCWC	4 cut(s)	25, 210, 250, 318
BsiHKCI	CYCGRG	2 cut(s)	241, 317
BsiSI	CCGG	5 cut(s)	89, 287, 595, 652, 665
BslFI	GGGAC	1 cut(s)	685
BslI	CCNNNNNNNGG	5 cut(s)	467, 600, 601, 667, 668
BsmAI	GTCTC	2 cut(s)	253, 284
BsmFI	GGGAC	1 cut(s)	685
BsmI	GAATGC	1 cut(s)	796
BsnI	GGCC	5 cut(s)	216, 286, 457, 824, 960
Bso31I	GGTCTC	1 cut(s)	284
BsoBI	CYCGRG	2 cut(s)	241, 317
Bsp119I	TTCGAA	2 cut(s)	371, 380
Bsp1286I	GDGCHC	4 cut(s)	25, 210, 250, 318
Bsp143I	GATC	7 cut(s)	105, 127, 321, 577, 865, 936, 940
Bsp19I	CCATGG	1 cut(s)	184
BspANI	GGCC	5 cut(s)	216, 286, 457, 824, 960
BspCNI	CTCAG	1 cut(s)	612
BspDI	ATCGAT	2 cut(s)	939, 964
BspFNI	CGCG	2 cut(s)	213, 871
BspHI	TCATGA	1 cut(s)	408
BspLI	GGNNCC	4 cut(s)	8, 650, 690, 891
BspMAI	CTGCAG	1 cut(s)	20
BspPI	GGATC	2 cut(s)	100, 860
BspT104I	TTCGAA	2 cut(s)	371, 380
BspT107I	GGYRCC	1 cut(s)	6
BspTNI	GGTCTC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	918
BsrFI	RCCGGY	1 cut(s)	664
BsrI	ACTGG	1 cut(s)	631
BssAI	RCCGGY	1 cut(s)	664
BssECI	CCNNGG	5 cut(s)	87, 184, 211, 344, 501
BssMI	GATC	7 cut(s)	105, 127, 321, 577, 865, 936, 940
BssT1I	CCWWGG	2 cut(s)	184, 501
Bst4CI	ACNGT	3 cut(s)	125, 419, 859
BstBI	TTCGAA	2 cut(s)	371, 380
BstC8I	GCNNGC	1 cut(s)	666
BstDEI	CTNAG	2 cut(s)	620, 885
BstDSI	CCRYGG	2 cut(s)	184, 211
BstF5I	GGATG	1 cut(s)	825
BstFNI	CGCG	2 cut(s)	213, 871
BstKTI	GATC	7 cut(s)	108, 130, 324, 580, 868, 939, 943
BstMAI	GTCTC	2 cut(s)	253, 284
BstMBI	GATC	7 cut(s)	105, 127, 321, 577, 865, 936, 940
BstMCI	CGRYCG	1 cut(s)	217
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 180, 186, 802, 838, 847, 920
BstSCI	CCNGG	2 cut(s)	87, 593
BstSFI	CTRYAG	2 cut(s)	16, 121
BstUI	CGCG	2 cut(s)	213, 871
BstV1I	GCAGC	2 cut(s)	192, 935
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BstZI	CGGCCG	1 cut(s)	214
Bsu15I	ATCGAT	2 cut(s)	939, 964
Bsu36I	CCTNAGG	1 cut(s)	885
BsuRI	GGCC	5 cut(s)	216, 286, 457, 824, 960
BsuTUI	ATCGAT	2 cut(s)	939, 964
BtgI	CCRYGG	2 cut(s)	184, 211
BtgZI	GCGATG	1 cut(s)	64
BtsCI	GGATG	1 cut(s)	825
BtsIMutI	CAGTG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	666
CciI	TCATGA	1 cut(s)	408
Cfr10I	RCCGGY	1 cut(s)	664
Cfr13I	GGNCC	5 cut(s)	284, 654, 688, 822, 889
Cfr42I	CCGCGG	1 cut(s)	214
ClaI	ATCGAT	2 cut(s)	939, 964
Csp6I	GTAC	7 cut(s)	7, 420, 427, 447, 682, 720, 878
CviAII	CATG	2 cut(s)	185, 409
CviQI	GTAC	7 cut(s)	7, 420, 427, 447, 682, 720, 878
DdeI	CTNAG	2 cut(s)	620, 885
DpnI	GATC	7 cut(s)	107, 129, 323, 579, 867, 938, 942
DpnII	GATC	7 cut(s)	105, 127, 321, 577, 865, 936, 940
EaeI	YGGCCR	1 cut(s)	214
EagI	CGGCCG	1 cut(s)	214
EciI	GGCGGA	1 cut(s)	792
Ecl136II	GAGCTC	3 cut(s)	23, 248, 316
EclXI	CGGCCG	1 cut(s)	214
Eco130I	CCWWGG	2 cut(s)	184, 501
Eco24I	GRGCYC	3 cut(s)	25, 250, 318
Eco31I	GGTCTC	1 cut(s)	284
Eco47I	GGWCC	3 cut(s)	654, 688, 889
Eco52I	CGGCCG	1 cut(s)	214
Eco53kI	GAGCTC	3 cut(s)	23, 248, 316
Eco81I	CCTNAGG	1 cut(s)	885
Eco88I	CYCGRG	2 cut(s)	241, 317
EcoICRI	GAGCTC	3 cut(s)	23, 248, 316
EcoO109I	RGGNCCY	1 cut(s)	889
EcoT14I	CCWWGG	2 cut(s)	184, 501
EcoT38I	GRGCYC	3 cut(s)	25, 250, 318
ErhI	CCWWGG	2 cut(s)	184, 501
FaeI	CATG	2 cut(s)	188, 412
FaiI	YATR	8 cut(s)	186, 410, 546, 645, 699, 767, 836, 864
FalI	AAGNNNNNCTT	2 cut(s)	375, 407
FaqI	GGGAC	1 cut(s)	685
FatI	CATG	2 cut(s)	184, 408
FauI	CCCGC	3 cut(s)	661, 669, 837
FblI	GTMKAC	2 cut(s)	195, 306
Fnu4HI	GCNGC	4 cut(s)	138, 181, 214, 924
FokI	GGATG	1 cut(s)	812
FriOI	GRGCYC	3 cut(s)	25, 250, 318
Fsp4HI	GCNGC	4 cut(s)	138, 181, 214, 924
GluI	GCNGC	4 cut(s)	138, 181, 214, 924
HaeIII	GGCC	5 cut(s)	216, 286, 457, 824, 960
HapII	CCGG	5 cut(s)	89, 287, 595, 652, 665
Hin1II	CATG	2 cut(s)	188, 412
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HindIII	AAGCTT	1 cut(s)	164
HinfI	GANTC	5 cut(s)	261, 326, 334, 340, 377
HpaII	CCGG	5 cut(s)	89, 287, 595, 652, 665
Hpy166II	GTNNAC	3 cut(s)	196, 307, 657
Hpy188I	TCNGA	6 cut(s)	157, 266, 339, 345, 462, 621
Hpy188III	TCNNGA	4 cut(s)	103, 243, 319, 409
Hpy8I	GTNNAC	3 cut(s)	196, 307, 657
Hpy99I	CGWCG	3 cut(s)	44, 137, 641
HpyAV	CCTTC	2 cut(s)	772, 816
HpyCH4III	ACNGT	3 cut(s)	125, 419, 859
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	3 cut(s)	18, 493, 923
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 180, 186, 802, 838, 847, 920
HpyF3I	CTNAG	2 cut(s)	620, 885
HpySE526I	ACGT	1 cut(s)	192
Hsp92II	CATG	2 cut(s)	188, 412
KpnI	GGTACC	1 cut(s)	10
KroI	GCCGGC	1 cut(s)	664
KroNI	GCCGGC	1 cut(s)	666
KspI	CCGCGG	1 cut(s)	214
Kzo9I	GATC	7 cut(s)	105, 127, 321, 577, 865, 936, 940
LmnI	GCTCC	3 cut(s)	213, 654, 951
Lsp1109I	GCAGC	2 cut(s)	192, 935
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	584, 700
MalI	GATC	7 cut(s)	107, 129, 323, 579, 867, 938, 942
MboI	GATC	7 cut(s)	105, 127, 321, 577, 865, 936, 940
MboII	GAAGA	1 cut(s)	270
MfeI	CAATTG	1 cut(s)	507
MflI	RGATCY	1 cut(s)	105
MhlI	GDGCHC	4 cut(s)	25, 210, 250, 318
MluCI	AATT	7 cut(s)	46, 463, 507, 540, 712, 873, 908
MlyI	GAGTC	3 cut(s)	255, 335, 349
MmeI	TCCRAC	4 cut(s)	133, 180, 289, 738
MnlI	CCTC	8 cut(s)	250, 283, 295, 339, 468, 836, 891, 894
MreI	CGCCGGCG	1 cut(s)	664
MroNI	GCCGGC	1 cut(s)	664
MseI	TTAA	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	213
MspI	CCGG	5 cut(s)	89, 287, 595, 652, 665
MspR9I	CCNGG	2 cut(s)	89, 595
MunI	CAATTG	1 cut(s)	507
Mva1269I	GAATGC	1 cut(s)	796
MvnI	CGCG	2 cut(s)	213, 871
MwoI	GCNNNNNNNGC	7 cut(s)	29, 180, 186, 802, 838, 847, 920
NaeI	GCCGGC	1 cut(s)	666
NciI	CCSGG	2 cut(s)	89, 595
NcoI	CCATGG	1 cut(s)	184
NdeII	GATC	7 cut(s)	105, 127, 321, 577, 865, 936, 940
NgoMIV	GCCGGC	1 cut(s)	664
NlaIII	CATG	2 cut(s)	188, 412
NlaIV	GGNNCC	4 cut(s)	8, 650, 690, 891
NmuCI	GTSAC	1 cut(s)	700
NspV	TTCGAA	2 cut(s)	371, 380
PaeR7I	CTCGAG	2 cut(s)	241, 317
PagI	TCATGA	1 cut(s)	408
PcsI	WCGNNNNNNNCGW	1 cut(s)	377
PctI	GAATGC	1 cut(s)	796
PdiI	GCCGGC	1 cut(s)	666
PfeI	GAWTC	2 cut(s)	334, 377
PkrI	GCNGC	4 cut(s)	139, 182, 215, 925
PleI	GAGTC	3 cut(s)	255, 334, 348
PpsI	GAGTC	3 cut(s)	255, 334, 348
PpuMI	RGGWCCY	1 cut(s)	889
PsiI	TTATAA	2 cut(s)	767, 836
Psp124BI	GAGCTC	3 cut(s)	25, 250, 318
Psp5II	RGGWCCY	1 cut(s)	889
PspN4I	GGNNCC	4 cut(s)	8, 650, 690, 891
PspPI	GGNCC	5 cut(s)	284, 654, 688, 822, 889
PspPPI	RGGWCCY	1 cut(s)	889
PstI	CTGCAG	1 cut(s)	20
PsuI	RGATCY	1 cut(s)	105
RsaI	GTAC	7 cut(s)	8, 421, 428, 448, 683, 721, 879
RsaNI	GTAC	7 cut(s)	7, 420, 427, 447, 682, 720, 878
SacI	GAGCTC	3 cut(s)	25, 250, 318
SacII	CCGCGG	1 cut(s)	214
SalI	GTCGAC	1 cut(s)	305
SaqAI	TTAA	1 cut(s)	555
SatI	GCNGC	4 cut(s)	138, 181, 214, 924
Sau3AI	GATC	7 cut(s)	105, 127, 321, 577, 865, 936, 940
Sau96I	GGNCC	5 cut(s)	284, 654, 688, 822, 889
ScaI	AGTACT	1 cut(s)	721
SchI	GAGTC	3 cut(s)	255, 335, 349
ScrFI	CCNGG	2 cut(s)	89, 595
SduI	GDGCHC	4 cut(s)	25, 210, 250, 318
SfcI	CTRYAG	2 cut(s)	16, 121
Sfr274I	CTCGAG	2 cut(s)	241, 317
Sfr303I	CCGCGG	1 cut(s)	214
SfuI	TTCGAA	2 cut(s)	371, 380
SgrAI	CRCCGGYG	1 cut(s)	664
SgrBI	CCGCGG	1 cut(s)	214
SinI	GGWCC	3 cut(s)	654, 688, 889
SlaI	CTCGAG	2 cut(s)	241, 317
SmlI	CTYRAG	2 cut(s)	241, 317
SmoI	CTYRAG	2 cut(s)	241, 317
Sse9I	AATT	7 cut(s)	46, 463, 507, 540, 712, 873, 908
SstI	GAGCTC	3 cut(s)	25, 250, 318
StyD4I	CCNGG	2 cut(s)	87, 593
StyI	CCWWGG	2 cut(s)	184, 501
TaaI	ACNGT	3 cut(s)	125, 419, 859
TaiI	ACGT	1 cut(s)	195
TasI	AATT	7 cut(s)	46, 463, 507, 540, 712, 873, 908
TatI	WGTACW	2 cut(s)	446, 719
TauI	GCSGC	2 cut(s)	140, 216
TfiI	GAWTC	2 cut(s)	334, 377
Tru1I	TTAA	1 cut(s)	555
Tru9I	TTAA	1 cut(s)	555
TscAI	CASTG	1 cut(s)	130
TseFI	GTSAC	1 cut(s)	700
TseI	GCWGC	2 cut(s)	180, 923
Tsp45I	GTSAC	1 cut(s)	700
TspDTI	ATGAA	3 cut(s)	397, 513, 533
TspGWI	ACGGA	1 cut(s)	28
TspRI	CASTG	1 cut(s)	130
VpaK11BI	GGWCC	3 cut(s)	654, 688, 889
XhoI	CTCGAG	2 cut(s)	241, 317
XmiI	GTMKAC	2 cut(s)	195, 306
ZrmI	AGTACT	1 cut(s)	721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.