Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0012915

Physical Location & Seq

Genomic Coordinates Reverse (-)

3528996 .. 3530699

Gene Structure 1704 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0021700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGAGTGGAGAAAGGAAGGTTGTGTGTGTTACAGGAGCTTCTGGTTTCATAGCTTCATGGCTGGTGAAGCTCTTGTTACAGAGAGGTTATGTCGTCAAAGCCACCGTTCGTGACCCAAATAATCCGAAGAAAACAGAACACTTGCTCTCACTTGAGGGAGCAAAGGAAAGGCTTCATTTGTTCAAAGCAGACTTGTTAGAAGAGGGGTCTTTTGACCTTGTAGTTGATGGATGTGAAGGTGTTTTCCACACCGCATCTCCGGTACTATTGTCATCGATCAGCGACCCACAGGCAGAACTGATTGATCCTGCAGTAAAGGGAACGCTTAATGTTCTTAGATCATGCGGGAAATTTCCAACAATCAAGAGGGTAGTTTTAACATCTTCCATGGCGGCAGTTATAGTCAATGGAAGACCATTAACCTCTAATGTGGTAGTTGATGAAACATGGTTTTCTGATCCACTTCTTTGTCAGGAGTTGAAGGAATGGTATTTTCTTTCGAAAACTTTAGCAGAGGAGGCTGCTTGGAAATTTGCTAAAGAAAACGGGATTGACATGGTGACCATAAATCCCTCGTACGTGATGGGTCCGCCCTTGCAGCCAACTCTTAATTTGAGTGTGGAGATGGTTCTGGATCTCAAGAAGGATGTCAACGGAGTAGCAATTGCCAATTATACATCTACTGATGTTAGAGATGTTGCCTCTGCACATATTCAAGCATTTGAAGTTCCTTCAGCCAGTGGAAGATATTGTTTAGTTGCAAATGTCACCCCTATTCACGAGGCTCTGAAGATTTTAAAGGAACTTCATCCTAGTTTGTGCCCACCTGAAATATGCGAGCATGATACCCCTTCTGCCCCAGAGTTTCAAATATCCCAGGAAAAAGCAAAAAGTTTGGGAGTTAGTTTCCTTCCGTTGGAAGTAAGTCTCAGGGACACTGTTGAATGCCTGAAGGAGAAGGGCTTCCTCAAGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

325

Amino Acids

35.55

Weight (kDa)

5.6

Isoelectric Point (pI)

27.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NmrA	PF05368	5 - 105	9.4e-08	NmrA-like family
Epimerase	PF01370	8 - 246	3.6e-21	NAD dependent epimerase/dehydratase family
3Beta_HSD	PF01073	10 - 241	8.7e-18	3-beta hydroxysteroid dehydrogenase/isomerase family
NAD_binding_4	PF07993	10 - 200	1.1e-13	Male sterility protein
GDP_Man_Dehyd	PF16363	10 - 129	7.2e-11	GDP-mannose 4,6 dehydratase
NAD_binding_10	PF13460	12 - 133	2e-08	NAD(P)H-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012915)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51990
fragaria_vesca	FvH4_7g01890
malus_domestica	MD02G1299900.v1.1 MD07G1025000.v1.1
prunus_persica	Prupe.2G024700_v2.0.a1
pyrus_communis	pycom02g25190 pycom03g05450 pycom07g01930
rosa_chinensis	RchiOBHm_Chr1g0318491
rosa_laevigata	RLG00000030533
rosa_multiflora	Rmu_co8489629.1_g000001
rosa_roxburghii	Rroxscaffold_4G00329110
rosa_rugosa	Rorug01G0021700
rosa_samantha	Rh1AG034100 Rh1BG030200 Rh1CG033600 Rh1DG037000
rosa_wichuraiana	Rw1G002710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	252, 345, 392, 590
AclWI	GGATC	3 cut(s)	299, 452, 642
AcsI	RAATTY	2 cut(s)	350, 530
AcuI	CTGAAG	3 cut(s)	717, 809, 971
AfaI	GTAC	2 cut(s)	264, 578
AfiI	CCNNNNNNNGG	1 cut(s)	916
AgsI	TTSAA	6 cut(s)	184, 481, 716, 725, 869, 944
AjnI	CCWGG	1 cut(s)	876
AluBI	AGCT	3 cut(s)	38, 53, 70
AluI	AGCT	3 cut(s)	38, 53, 70
Alw26I	GTCTC	1 cut(s)	932
AlwI	GGATC	3 cut(s)	299, 452, 642
ApeKI	GCWGC	2 cut(s)	521, 598
ApoI	RAATTY	2 cut(s)	350, 530
Asp700I	GAANNNNTTC	2 cut(s)	171, 962
AspS9I	GGNCC	1 cut(s)	587
AsuHPI	GGTGA	3 cut(s)	76, 571, 760
AsuII	TTCGAA	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	587
BaeGI	GKGCMC	1 cut(s)	824
BaeI	ACNNNNGTAYC	2 cut(s)	254, 287
BauI	CACGAG	1 cut(s)	779
BbsI	GAAGAC	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	508, 610
BccI	CCATC	3 cut(s)	221, 577, 619
BciT130I	CCWGG	1 cut(s)	878
BcoDI	GTCTC	1 cut(s)	932
BfaI	CTAG	1 cut(s)	813
BfmI	CTRYAG	1 cut(s)	309
BisI	GCNGC	3 cut(s)	393, 522, 599
BlsI	GCNGC	3 cut(s)	394, 523, 600
Bme1390I	CCNGG	1 cut(s)	878
Bme18I	GGWCC	1 cut(s)	587
BmgT120I	GGNCC	1 cut(s)	587
BmiI	GGNNCC	1 cut(s)	588
BmrFI	CCNGG	1 cut(s)	878
BmsI	GCATC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	418
Bpu14I	TTCGAA	1 cut(s)	500
BpuEI	CTTGAG	3 cut(s)	173, 623, 953
Bsa29I	ATCGAT	1 cut(s)	275
BsaAI	YACGTR	1 cut(s)	580
BsaJI	CCNNGG	2 cut(s)	387, 876
BsaWI	WCCGGW	1 cut(s)	259
BsaXI	ACNNNNNCTCC	2 cut(s)	241, 271
Bsc4I	CCNNNNNNNGG	1 cut(s)	916
Bse1I	ACTGG	1 cut(s)	738
BseBI	CCWGG	1 cut(s)	878
BseCI	ATCGAT	1 cut(s)	275
BseDI	CCNNGG	2 cut(s)	387, 876
BseGI	GGATG	3 cut(s)	236, 652, 808
BseLI	CCNNNNNNNGG	1 cut(s)	916
BseMII	CTCAG	1 cut(s)	943
BseNI	ACTGG	1 cut(s)	738
BseRI	GAGGAG	1 cut(s)	530
BseSI	GKGCMC	1 cut(s)	824
BseXI	GCAGC	2 cut(s)	508, 610
BsgI	GTGCAG	1 cut(s)	690
BshVI	ATCGAT	1 cut(s)	275
BsiSI	CCGG	1 cut(s)	260
BsiWI	CGTACG	1 cut(s)	576
BslFI	GGGAC	1 cut(s)	947
BslI	CCNNNNNNNGG	1 cut(s)	916
BsmAI	GTCTC	1 cut(s)	932
BsmFI	GGGAC	1 cut(s)	947
BsmI	GAATGC	1 cut(s)	950
Bsp119I	TTCGAA	1 cut(s)	500
Bsp1286I	GDGCHC	1 cut(s)	824
Bsp143I	GATC	5 cut(s)	276, 304, 338, 457, 634
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	4 cut(s)	252, 345, 392, 590
BspCNI	CTCAG	1 cut(s)	942
BspDI	ATCGAT	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	588
BspMAI	CTGCAG	1 cut(s)	313
BspPI	GGATC	3 cut(s)	299, 452, 642
BspT104I	TTCGAA	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	738
BssECI	CCNNGG	2 cut(s)	387, 876
BssMI	GATC	5 cut(s)	276, 304, 338, 457, 634
BssSI	CACGAG	1 cut(s)	779
BssT1I	CCWWGG	1 cut(s)	387
Bst2BI	CACGAG	1 cut(s)	779
Bst2UI	CCWGG	1 cut(s)	878
Bst4CI	ACNGT	2 cut(s)	106, 940
Bst6I	CTCTTC	1 cut(s)	195
BstBAI	YACGTR	1 cut(s)	580
BstBI	TTCGAA	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	839
BstDEI	CTNAG	2 cut(s)	335, 929
BstDSI	CCRYGG	1 cut(s)	387
BstEII	GGTNACC	1 cut(s)	559
BstF5I	GGATG	3 cut(s)	236, 652, 808
BstKTI	GATC	5 cut(s)	279, 307, 341, 460, 637
BstMAI	GTCTC	1 cut(s)	932
BstMBI	GATC	5 cut(s)	276, 304, 338, 457, 634
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 518, 598
BstNI	CCWGG	1 cut(s)	878
BstPI	GGTNACC	1 cut(s)	559
BstSCI	CCNGG	1 cut(s)	876
BstSFI	CTRYAG	1 cut(s)	309
BstSLI	GKGCMC	1 cut(s)	824
BstV1I	GCAGC	2 cut(s)	508, 610
BstV2I	GAAGAC	1 cut(s)	418
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
Bsu15I	ATCGAT	1 cut(s)	275
BsuTUI	ATCGAT	1 cut(s)	275
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	3 cut(s)	236, 652, 808
BtsIMutI	CAGTG	2 cut(s)	745, 936
Cac8I	GCNNGC	1 cut(s)	839
Cfr13I	GGNCC	1 cut(s)	587
ClaI	ATCGAT	1 cut(s)	275
Csp6I	GTAC	2 cut(s)	263, 577
CviAII	CATG	6 cut(s)	57, 342, 388, 447, 556, 842
CviQI	GTAC	2 cut(s)	263, 577
DdeI	CTNAG	2 cut(s)	335, 929
DpnI	GATC	5 cut(s)	278, 306, 340, 459, 636
DpnII	GATC	5 cut(s)	276, 304, 338, 457, 634
DraI	TTTAAA	1 cut(s)	798
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
EciI	GGCGGA	1 cut(s)	579
Eco130I	CCWWGG	1 cut(s)	387
Eco47I	GGWCC	1 cut(s)	587
Eco57I	CTGAAG	3 cut(s)	717, 809, 971
Eco91I	GGTNACC	1 cut(s)	559
EcoO65I	GGTNACC	1 cut(s)	559
EcoRII	CCWGG	1 cut(s)	876
EcoT14I	CCWWGG	1 cut(s)	387
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	6 cut(s)	60, 345, 391, 450, 559, 845
FaqI	GGGAC	1 cut(s)	947
FatI	CATG	6 cut(s)	56, 341, 387, 446, 555, 841
FauI	CCCGC	1 cut(s)	338
Fnu4HI	GCNGC	3 cut(s)	393, 522, 599
FokI	GGATG	3 cut(s)	243, 659, 795
Fsp4HI	GCNGC	3 cut(s)	393, 522, 599
FspBI	CTAG	1 cut(s)	813
GluI	GCNGC	3 cut(s)	393, 522, 599
HapII	CCGG	1 cut(s)	260
Hin1II	CATG	6 cut(s)	60, 345, 391, 450, 559, 845
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HpaII	CCGG	1 cut(s)	260
HphI	GGTGA	3 cut(s)	76, 571, 760
Hpy166II	GTNNAC	1 cut(s)	652
Hpy188I	TCNGA	3 cut(s)	126, 457, 789
Hpy188III	TCNNGA	6 cut(s)	110, 364, 473, 632, 640, 779
Hpy8I	GTNNAC	1 cut(s)	652
HpyAV	CCTTC	9 cut(s)	10, 230, 475, 637, 741, 861, 920, 946, 952
HpyCH4III	ACNGT	2 cut(s)	106, 940
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	4 cut(s)	311, 598, 707, 761
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 518, 598
HpyF3I	CTNAG	2 cut(s)	335, 929
HpySE526I	ACGT	1 cut(s)	579
Hsp92II	CATG	6 cut(s)	60, 345, 391, 450, 559, 845
Kzo9I	GATC	5 cut(s)	276, 304, 338, 457, 634
LmnI	GCTCC	2 cut(s)	35, 158
Lsp1109I	GCAGC	2 cut(s)	508, 610
LweI	GCATC	1 cut(s)	263
MaeI	CTAG	1 cut(s)	813
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	5 cut(s)	28, 75, 110, 559, 766
MalI	GATC	5 cut(s)	278, 306, 340, 459, 636
MboI	GATC	5 cut(s)	276, 304, 338, 457, 634
MboII	GAAGA	6 cut(s)	139, 212, 375, 423, 756, 802
MfeI	CAATTG	1 cut(s)	663
MflI	RGATCY	1 cut(s)	634
MhlI	GDGCHC	1 cut(s)	824
MluCI	AATT	5 cut(s)	350, 530, 610, 663, 670
MmeI	TCCRAC	2 cut(s)	380, 897
MroXI	GAANNNNTTC	2 cut(s)	171, 962
MseI	TTAA	5 cut(s)	327, 377, 419, 609, 797
MspI	CCGG	1 cut(s)	260
MspR9I	CCNGG	1 cut(s)	878
MunI	CAATTG	1 cut(s)	663
Mva1269I	GAATGC	1 cut(s)	950
MvaI	CCWGG	1 cut(s)	878
MwoI	GCNNNNNNNGC	3 cut(s)	67, 518, 598
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	5 cut(s)	276, 304, 338, 457, 634
NlaIII	CATG	6 cut(s)	60, 345, 391, 450, 559, 845
NlaIV	GGNNCC	1 cut(s)	588
NmuCI	GTSAC	3 cut(s)	110, 559, 766
NspV	TTCGAA	1 cut(s)	500
PctI	GAATGC	1 cut(s)	950
PdmI	GAANNNNTTC	2 cut(s)	171, 962
Pfl23II	CGTACG	1 cut(s)	576
PkrI	GCNGC	3 cut(s)	394, 523, 600
Ppu21I	YACGTR	1 cut(s)	580
Psp6I	CCWGG	1 cut(s)	876
PspEI	GGTNACC	1 cut(s)	559
PspGI	CCWGG	1 cut(s)	876
PspLI	CGTACG	1 cut(s)	576
PspN4I	GGNNCC	1 cut(s)	588
PspPI	GGNCC	1 cut(s)	587
PstI	CTGCAG	1 cut(s)	313
PsuI	RGATCY	1 cut(s)	634
RsaI	GTAC	2 cut(s)	264, 578
RsaNI	GTAC	2 cut(s)	263, 577
SaqAI	TTAA	5 cut(s)	327, 377, 419, 609, 797
SatI	GCNGC	3 cut(s)	393, 522, 599
Sau3AI	GATC	5 cut(s)	276, 304, 338, 457, 634
Sau96I	GGNCC	1 cut(s)	587
ScrFI	CCNGG	1 cut(s)	878
SduI	GDGCHC	1 cut(s)	824
SfaNI	GCATC	1 cut(s)	263
SfcI	CTRYAG	1 cut(s)	309
SfuI	TTCGAA	1 cut(s)	500
SinI	GGWCC	1 cut(s)	587
SmlI	CTYRAG	3 cut(s)	152, 638, 968
SmoI	CTYRAG	3 cut(s)	152, 638, 968
Sse9I	AATT	5 cut(s)	350, 530, 610, 663, 670
SsiI	CCGC	4 cut(s)	252, 345, 392, 590
SspMI	CTAG	1 cut(s)	813
StyD4I	CCNGG	1 cut(s)	876
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	2 cut(s)	106, 940
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	2 cut(s)	275, 500
TasI	AATT	5 cut(s)	350, 530, 610, 663, 670
TauI	GCSGC	1 cut(s)	395
Tru1I	TTAA	5 cut(s)	327, 377, 419, 609, 797
Tru9I	TTAA	5 cut(s)	327, 377, 419, 609, 797
TscAI	CASTG	2 cut(s)	745, 943
TseFI	GTSAC	3 cut(s)	110, 559, 766
TseI	GCWGC	2 cut(s)	521, 598
Tsp45I	GTSAC	3 cut(s)	110, 559, 766
TspDTI	ATGAA	5 cut(s)	37, 45, 164, 456, 797
TspGWI	ACGGA	2 cut(s)	669, 903
TspRI	CASTG	2 cut(s)	745, 943
VpaK11BI	GGWCC	1 cut(s)	587
XapI	RAATTY	2 cut(s)	350, 530
XmnI	GAANNNNTTC	2 cut(s)	171, 962
XspI	CTAG	1 cut(s)	813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.