Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008437

Physical Location & Seq

Genomic Coordinates Forward (+)

19328490 .. 19331970

Gene Structure 3481 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1332 bp

ATGGACAAAGGAGCACCTCCTAGTATTTTTGTGAATGATGGGTCATTCATGGAAAGATTCAGACAGCTTCAACAGGAGAAAGATAAAGACAAGGATAAGGTTGTCCAAGTTGAGGATTCTAAGCCGGTGAAGATTATATCAAATCCCAAACCTGCTGCTAATAAAATTTCCATTGGATTAAAGCCCAATGATGCCCAGAAGAAAGGTGGTAAGCTTGCTTTCAGCTTGAAGCAAAAGTCTAAGCTTCTTGCACCTCCTGTGAAGCTTGGTACAGAAGAAGATGAGGATGATGAGGATGTTAAACATGAACAAGGCTTTGGATCCGTAAAGCGTCAAAAGTTAGAGCAGAGAGACACACCTGTAAAGTCAGCAAAAGTATCGGATGTTGCACCACCTCCGCCCAGTGATCCTACTGTGAAGAAAGTTGCTGATAAACTAGCAAGTTTTGTTGCTAAGCATGGAAGGCCATTTGAGCACATTACACGGCAAAAGAATCCTGGGGATACACCATTTAAATTTCTTTTTGACGAGAACTGTGCGGACTACAAGTACTATGTATTCAGGCTGGCTGAAGAGGAAAAATTAATTTCACAAACCAAGGATTCTGGTGTACTTCACAGTGGTGATGCAGGCTCGCGAACGTCCACAGCAGCAATCCCTTTGCAAAAGCCAGCTTATCAACAAACAGGATATCAGATCCCTGCCTCAGCTCTCTATGATACTCCTGTGGAACCTGGAGCTTCTTCTAGATCTGCTCAGGCATCAATTACAAGACCCAGCGACAGTGACTCCTTTAGTGGGCCGAGGGGTGCAGACCCTCTATCAATGATGGAGTTTTACATGAAGAAGGCTGCCCAAGAAGAGAAAATGAGACGTCCTAGGCAGTCAAAAGACGAAATGCCTCCACCAGCTTCCCTTCAAGGCCCATCTGAAACTTCCTCCACAGACCCTGGAAAGAGAGGTCATCACATGGGTGATTATATCCCACTTGAGGAGCTAGATAAGTTCCTTTCAAAGTGCAATGACGCAGCTGCACAAAAAGCCACAAAGGAGGCTGCTGAGAAAGCGAAGATCCAAGCAGATAATGTTGGACATAAACTCTTGTCAAAAATGGGTTGGAAAGAAGGTGAAGGTATAGGAAGCTCCAGAAAGGGTATGGCAGACCCTATAATGGCAGGCGATGTAAAGACAAACAACTTGGGAGTTGGTGCTTCCGCTCCAGGAGAAGTCAAGCCTGAGGATGATATATACGAGCAGTACAAGAAGCGGATGATGCTGGGTTACAAACACAGACCCAATCCACTGGGAAATCCCAGGAAGGCGTATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch Surp

Protein Analysis

443

Amino Acids

48.69

Weight (kDa)

9.07

Isoelectric Point (pI)

42.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	141 - 191	2.5e-12	Surp module
G-patch	PF01585	361 - 404	3.6e-13	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52120 AT3G52120 AT3G52120 AT3G52120
fragaria_vesca	FvH4_7g00680 FvH4_7g00680
malus_domestica	MD02G1315400.v1.1 MD07G1006500.v1.1
prunus_persica	Prupe.2G009600_v2.0.a1 Prupe.2G009600_v2.0.a1 Prupe.2G009600_v2.0.a1
pyrus_communis	pycom02g26440 pycom07g00520
rosa_chinensis	RchiOBHm_Chr1g0314901
rosa_laevigata	RLG00000030756
rosa_multiflora	Rmu_sc0005168.1_g000002
rosa_roxburghii	Rroxscaffold_4G00331690
rosa_rugosa	Rorug01G0002800
rosa_samantha	Rh1AG013800 Rh1BG005400 Rh1CG012100 Rh1DG007200
rosa_wichuraiana	Rw1G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	877
Acc36I	ACCTGC	1 cut(s)	160
AccBSI	CCGCTC	1 cut(s)	1217
AccII	CGCG	1 cut(s)	637
AciI	CCGC	4 cut(s)	398, 539, 1215, 1267
AclWI	GGATC	5 cut(s)	315, 328, 401, 691, 1066
AcsI	RAATTY	2 cut(s)	165, 515
AcuI	CTGAAG	1 cut(s)	591
AcyI	GRCGYC	1 cut(s)	874
AfaI	GTAC	4 cut(s)	271, 551, 612, 1259
AfiI	CCNNNNNNNGG	4 cut(s)	112, 798, 991, 1171
AgsI	TTSAA	4 cut(s)	71, 229, 920, 1014
AjnI	CCWGG	5 cut(s)	496, 733, 949, 1219, 1313
AjuI	GAANNNNNNNTTGG	2 cut(s)	300, 332
AleI	CACNNNNGTG	2 cut(s)	621, 972
Alw21I	GWGCWC	2 cut(s)	16, 477
Alw26I	GTCTC	2 cut(s)	345, 865
AlwI	GGATC	5 cut(s)	315, 328, 401, 691, 1066
AlwNI	CAGNNNCTG	1 cut(s)	950
AoxI	GGCC	3 cut(s)	464, 800, 922
ApeKI	GCWGC	6 cut(s)	155, 650, 851, 1028, 1031, 1055
ApoI	RAATTY	2 cut(s)	165, 515
AseI	ATTAAT	1 cut(s)	584
AspA2I	CCTAGG	1 cut(s)	878
AspS9I	GGNCC	2 cut(s)	800, 923
AsuHPI	GGTGA	4 cut(s)	139, 635, 986, 1139
AvrII	CCTAGG	1 cut(s)	878
AxyI	CCTNAGG	1 cut(s)	1236
BaeI	ACNNNNGTAYC	2 cut(s)	711, 744
BamHI	GGATCC	1 cut(s)	320
BarI	GAAGNNNNNNTAC	1 cut(s)	1310
Bbv12I	GWGCWC	2 cut(s)	16, 477
BbvCI	CCTCAGC	1 cut(s)	706
BbvI	GCAGC	6 cut(s)	142, 662, 838, 1018, 1040, 1042
BccI	CCATC	3 cut(s)	32, 823, 934
BceAI	ACGGC	1 cut(s)	500
BcgI	CGANNNNNNTGC	4 cut(s)	360, 394, 518, 552
BciT130I	CCWGG	5 cut(s)	498, 735, 951, 1221, 1315
BciVI	GTATCC	1 cut(s)	496
BcoDI	GTCTC	2 cut(s)	345, 865
BfaI	CTAG	5 cut(s)	21, 437, 747, 879, 998
BfuAI	ACCTGC	1 cut(s)	160
BfuI	GTATCC	1 cut(s)	496
BglII	AGATCT	1 cut(s)	749
BisI	GCNGC	6 cut(s)	156, 651, 852, 1029, 1032, 1056
BlnI	CCTAGG	1 cut(s)	878
BlpI	GCTNAGC	1 cut(s)	453
BlsI	GCNGC	6 cut(s)	157, 652, 853, 1030, 1033, 1057
BmcAI	AGTACT	1 cut(s)	551
Bme1390I	CCNGG	5 cut(s)	498, 735, 951, 1221, 1315
BmgT120I	GGNCC	2 cut(s)	800, 923
BmiI	GGNNCC	2 cut(s)	322, 732
BmrFI	CCNGG	5 cut(s)	498, 735, 951, 1221, 1315
BmrI	ACTGGG	2 cut(s)	396, 1313
BmsI	GCATC	4 cut(s)	181, 616, 770, 1263
BmuI	ACTGGG	2 cut(s)	396, 1313
BpmI	CTGGAG	3 cut(s)	756, 1129, 1203
Bpu10I	CCTNAGC	2 cut(s)	706, 756
Bpu1102I	GCTNAGC	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	1010
BsaHI	GRCGYC	1 cut(s)	874
BsaJI	CCNNGG	6 cut(s)	497, 597, 803, 878, 949, 1313
BsaXI	ACNNNNNCTCC	2 cut(s)	773, 803
Bsc4I	CCNNNNNNNGG	4 cut(s)	112, 798, 991, 1171
Bse118I	RCCGGY	1 cut(s)	124
Bse1I	ACTGG	2 cut(s)	402, 1308
Bse21I	CCTNAGG	1 cut(s)	1236
Bse3DI	GCAATG	1 cut(s)	1027
BseBI	CCWGG	5 cut(s)	498, 735, 951, 1221, 1315
BseDI	CCNNGG	6 cut(s)	497, 597, 803, 878, 949, 1313
BseGI	GGATG	5 cut(s)	292, 301, 388, 1246, 1275
BseLI	CCNNNNNNNGG	4 cut(s)	112, 798, 991, 1171
BseMI	GCAATG	1 cut(s)	1027
BseMII	CTCAG	4 cut(s)	720, 770, 1050, 1227
BseNI	ACTGG	2 cut(s)	402, 1308
BseRI	GAGGAG	1 cut(s)	1007
BseXI	GCAGC	6 cut(s)	142, 662, 838, 1018, 1040, 1042
BseYI	CCCAGC	2 cut(s)	776, 1276
BsgI	GTGCAG	2 cut(s)	831, 1017
Bsh1236I	CGCG	1 cut(s)	637
BshFI	GGCC	3 cut(s)	466, 802, 924
BsiHKAI	GWGCWC	2 cut(s)	16, 477
BsiSI	CCGG	1 cut(s)	125
BslI	CCNNNNNNNGG	4 cut(s)	112, 798, 991, 1171
BsmAI	GTCTC	2 cut(s)	345, 865
BsmBI	CGTCTC	1 cut(s)	865
BsnI	GGCC	3 cut(s)	466, 802, 924
Bsp1286I	GDGCHC	2 cut(s)	16, 477
Bsp143I	GATC	5 cut(s)	320, 406, 696, 749, 1071
Bsp1720I	GCTNAGC	1 cut(s)	453
Bsp68I	TCGCGA	1 cut(s)	637
BspACI	CCGC	4 cut(s)	398, 539, 1215, 1267
BspANI	GGCC	3 cut(s)	466, 802, 924
BspCNI	CTCAG	4 cut(s)	719, 769, 1051, 1228
BspFNI	CGCG	1 cut(s)	637
BspLI	GGNNCC	2 cut(s)	322, 732
BspMI	ACCTGC	1 cut(s)	160
BspPI	GGATC	5 cut(s)	315, 328, 401, 691, 1066
BsrBI	CCGCTC	1 cut(s)	1217
BsrDI	GCAATG	1 cut(s)	1027
BsrFI	RCCGGY	1 cut(s)	124
BsrI	ACTGG	2 cut(s)	402, 1308
BssAI	RCCGGY	1 cut(s)	124
BssECI	CCNNGG	6 cut(s)	497, 597, 803, 878, 949, 1313
BssMI	GATC	5 cut(s)	320, 406, 696, 749, 1071
BssNI	GRCGYC	1 cut(s)	874
BssT1I	CCWWGG	2 cut(s)	597, 878
Bst2UI	CCWGG	5 cut(s)	498, 735, 951, 1221, 1315
Bst4CI	ACNGT	4 cut(s)	415, 536, 620, 785
Bst6I	CTCTTC	2 cut(s)	567, 855
BstACI	GRCGYC	1 cut(s)	874
BstC8I	GCNNGC	6 cut(s)	216, 567, 631, 635, 672, 1177
BstDEI	CTNAG	7 cut(s)	120, 240, 453, 706, 756, 1059, 1236
BstF5I	GGATG	5 cut(s)	292, 301, 388, 1246, 1275
BstFNI	CGCG	1 cut(s)	637
BstKTI	GATC	5 cut(s)	323, 409, 699, 752, 1074
BstMAI	GTCTC	2 cut(s)	345, 865
BstMBI	GATC	5 cut(s)	320, 406, 696, 749, 1071
BstMWI	GCNNNNNNNGC	5 cut(s)	463, 472, 1040, 1064, 1273
BstNI	CCWGG	5 cut(s)	498, 735, 951, 1221, 1315
BstSCI	CCNGG	5 cut(s)	496, 733, 949, 1219, 1313
BstUI	CGCG	1 cut(s)	637
BstV1I	GCAGC	6 cut(s)	142, 662, 838, 1018, 1040, 1042
BstX2I	RGATCY	4 cut(s)	320, 696, 749, 1071
BstXI	CCANNNNNNTGG	1 cut(s)	1303
BstYI	RGATCY	4 cut(s)	320, 696, 749, 1071
Bsu36I	CCTNAGG	1 cut(s)	1236
BsuI	GTATCC	1 cut(s)	496
BsuRI	GGCC	3 cut(s)	466, 802, 924
BtgZI	GCGATG	1 cut(s)	1194
BtsCI	GGATG	5 cut(s)	292, 301, 388, 1246, 1275
BtsIMutI	CAGTG	4 cut(s)	409, 625, 790, 1301
BtuMI	TCGCGA	1 cut(s)	637
BveI	ACCTGC	1 cut(s)	160
Cac8I	GCNNGC	6 cut(s)	216, 567, 631, 635, 672, 1177
CaiI	CAGNNNCTG	1 cut(s)	950
Cfr10I	RCCGGY	1 cut(s)	124
Cfr13I	GGNCC	2 cut(s)	800, 923
CseI	GACGC	2 cut(s)	320, 1034
Csp6I	GTAC	4 cut(s)	270, 550, 611, 1258
CviAII	CATG	5 cut(s)	49, 305, 458, 841, 970
CviQI	GTAC	4 cut(s)	270, 550, 611, 1258
DdeI	CTNAG	7 cut(s)	120, 240, 453, 706, 756, 1059, 1236
DpnI	GATC	5 cut(s)	322, 408, 698, 751, 1073
DpnII	GATC	5 cut(s)	320, 406, 696, 749, 1071
DraI	TTTAAA	1 cut(s)	514
Eam1104I	CTCTTC	2 cut(s)	567, 855
EarI	CTCTTC	2 cut(s)	567, 855
EciI	GGCGGA	1 cut(s)	387
Eco130I	CCWWGG	2 cut(s)	597, 878
Eco32I	GATATC	1 cut(s)	692
Eco57I	CTGAAG	1 cut(s)	591
Eco81I	CCTNAGG	1 cut(s)	1236
EcoRII	CCWGG	5 cut(s)	496, 733, 949, 1219, 1313
EcoRV	GATATC	1 cut(s)	692
EcoT14I	CCWWGG	2 cut(s)	597, 878
ErhI	CCWWGG	2 cut(s)	597, 878
Esp3I	CGTCTC	1 cut(s)	865
FaeI	CATG	5 cut(s)	52, 308, 461, 844, 973
FatI	CATG	5 cut(s)	48, 304, 457, 840, 969
Fnu4HI	GCNGC	6 cut(s)	156, 651, 852, 1029, 1032, 1056
FokI	GGATG	5 cut(s)	299, 308, 395, 1253, 1282
Fsp4HI	GCNGC	6 cut(s)	156, 651, 852, 1029, 1032, 1056
FspBI	CTAG	5 cut(s)	21, 437, 747, 879, 998
GluI	GCNGC	6 cut(s)	156, 651, 852, 1029, 1032, 1056
GsaI	CCCAGC	2 cut(s)	780, 1280
GsuI	CTGGAG	3 cut(s)	756, 1129, 1203
HaeIII	GGCC	3 cut(s)	466, 802, 924
HapII	CCGG	1 cut(s)	125
HgaI	GACGC	2 cut(s)	320, 1034
Hin1I	GRCGYC	1 cut(s)	874
Hin1II	CATG	5 cut(s)	52, 308, 461, 844, 973
HindIII	AAGCTT	3 cut(s)	212, 242, 263
HinfI	GANTC	5 cut(s)	57, 116, 493, 602, 788
HpaII	CCGG	1 cut(s)	125
HphI	GGTGA	4 cut(s)	139, 635, 986, 1139
Hpy166II	GTNNAC	2 cut(s)	611, 645
Hpy188I	TCNGA	4 cut(s)	62, 382, 696, 931
Hpy188III	TCNNGA	3 cut(s)	636, 747, 1146
Hpy8I	GTNNAC	2 cut(s)	611, 645
HpyAV	CCTTC	6 cut(s)	456, 841, 926, 1118, 1124, 1312
HpyCH4III	ACNGT	4 cut(s)	415, 536, 620, 785
HpyCH4IV	ACGT	2 cut(s)	641, 874
HpyCH4V	TGCA	7 cut(s)	251, 389, 629, 664, 812, 1020, 1034
HpyF10VI	GCNNNNNNNGC	5 cut(s)	463, 472, 1040, 1064, 1273
HpyF3I	CTNAG	7 cut(s)	120, 240, 453, 706, 756, 1059, 1236
HpySE526I	ACGT	2 cut(s)	641, 874
Hsp92I	GRCGYC	1 cut(s)	874
Hsp92II	CATG	5 cut(s)	52, 308, 461, 844, 973
Kzo9I	GATC	5 cut(s)	320, 406, 696, 749, 1071
LmnI	GCTCC	5 cut(s)	11, 737, 994, 1148, 1222
Lsp1109I	GCAGC	6 cut(s)	142, 662, 838, 1018, 1040, 1042
LweI	GCATC	4 cut(s)	181, 616, 770, 1263
MaeI	CTAG	5 cut(s)	21, 437, 747, 879, 998
MaeII	ACGT	2 cut(s)	641, 874
MaeIII	GTNAC	2 cut(s)	785, 1280
MalI	GATC	5 cut(s)	322, 408, 698, 751, 1073
MbiI	CCGCTC	1 cut(s)	1217
MboI	GATC	5 cut(s)	320, 406, 696, 749, 1071
MflI	RGATCY	4 cut(s)	320, 696, 749, 1071
MhlI	GDGCHC	2 cut(s)	16, 477
MluCI	AATT	5 cut(s)	165, 515, 581, 585, 765
MlyI	GAGTC	1 cut(s)	782
MmeI	TCCRAC	2 cut(s)	1069, 1097
MseI	TTAA	4 cut(s)	179, 300, 513, 584
MslI	CAYNNNNRTG	2 cut(s)	621, 972
MspA1I	CMGCKG	1 cut(s)	1031
MspI	CCGG	1 cut(s)	125
MspR9I	CCNGG	5 cut(s)	498, 735, 951, 1221, 1315
MvaI	CCWGG	5 cut(s)	498, 735, 951, 1221, 1315
MvnI	CGCG	1 cut(s)	637
MwoI	GCNNNNNNNGC	5 cut(s)	463, 472, 1040, 1064, 1273
NdeII	GATC	5 cut(s)	320, 406, 696, 749, 1071
NlaIII	CATG	5 cut(s)	52, 308, 461, 844, 973
NlaIV	GGNNCC	2 cut(s)	322, 732
NmeAIII	GCCGAG	1 cut(s)	828
NmuCI	GTSAC	1 cut(s)	785
NruI	TCGCGA	1 cut(s)	637
OliI	CACNNNNGTG	2 cut(s)	621, 972
PfeI	GAWTC	4 cut(s)	57, 116, 493, 602
PfoI	TCCNGGA	1 cut(s)	1219
PkrI	GCNGC	6 cut(s)	157, 652, 853, 1030, 1033, 1057
PleI	GAGTC	1 cut(s)	782
PpsI	GAGTC	1 cut(s)	782
PshBI	ATTAAT	1 cut(s)	584
Psp6I	CCWGG	5 cut(s)	496, 733, 949, 1219, 1313
PspFI	CCCAGC	2 cut(s)	776, 1276
PspGI	CCWGG	5 cut(s)	496, 733, 949, 1219, 1313
PspN4I	GGNNCC	2 cut(s)	322, 732
PspPI	GGNCC	2 cut(s)	800, 923
PstNI	CAGNNNCTG	1 cut(s)	950
PsuI	RGATCY	4 cut(s)	320, 696, 749, 1071
PvuII	CAGCTG	1 cut(s)	1031
RruI	TCGCGA	1 cut(s)	637
RsaI	GTAC	4 cut(s)	271, 551, 612, 1259
RsaNI	GTAC	4 cut(s)	270, 550, 611, 1258
RseI	CAYNNNNRTG	2 cut(s)	621, 972
SaqAI	TTAA	4 cut(s)	179, 300, 513, 584
SatI	GCNGC	6 cut(s)	156, 651, 852, 1029, 1032, 1056
Sau3AI	GATC	5 cut(s)	320, 406, 696, 749, 1071
Sau96I	GGNCC	2 cut(s)	800, 923
ScaI	AGTACT	1 cut(s)	551
SchI	GAGTC	1 cut(s)	782
ScrFI	CCNGG	5 cut(s)	498, 735, 951, 1221, 1315
SduI	GDGCHC	2 cut(s)	16, 477
SfaNI	GCATC	4 cut(s)	181, 616, 770, 1263
SmiI	ATTTAAAT	1 cut(s)	514
SmiMI	CAYNNNNRTG	2 cut(s)	621, 972
SmlI	CTYRAG	1 cut(s)	989
SmoI	CTYRAG	1 cut(s)	989
Sse9I	AATT	5 cut(s)	165, 515, 581, 585, 765
SsiI	CCGC	4 cut(s)	398, 539, 1215, 1267
SspMI	CTAG	5 cut(s)	21, 437, 747, 879, 998
StyD4I	CCNGG	5 cut(s)	496, 733, 949, 1219, 1313
StyI	CCWWGG	2 cut(s)	597, 878
SwaI	ATTTAAAT	1 cut(s)	514
TaaI	ACNGT	4 cut(s)	415, 536, 620, 785
TaiI	ACGT	2 cut(s)	644, 877
TasI	AATT	5 cut(s)	165, 515, 581, 585, 765
TatI	WGTACW	3 cut(s)	549, 610, 1257
TfiI	GAWTC	4 cut(s)	57, 116, 493, 602
Tru1I	TTAA	4 cut(s)	179, 300, 513, 584
Tru9I	TTAA	4 cut(s)	179, 300, 513, 584
TscAI	CASTG	4 cut(s)	409, 625, 790, 1308
TseFI	GTSAC	1 cut(s)	785
TseI	GCWGC	6 cut(s)	155, 650, 851, 1028, 1031, 1055
Tsp45I	GTSAC	1 cut(s)	785
TspDTI	ATGAA	3 cut(s)	37, 321, 857
TspGWI	ACGGA	1 cut(s)	313
TspRI	CASTG	4 cut(s)	409, 625, 790, 1308
VspI	ATTAAT	1 cut(s)	584
XapI	RAATTY	2 cut(s)	165, 515
XbaI	TCTAGA	1 cut(s)	746
XcmI	CCANNNNNNNNNTGG	2 cut(s)	203, 1153
XmaJI	CCTAGG	1 cut(s)	878
XspI	CTAG	5 cut(s)	21, 437, 747, 879, 998
ZraI	GACGTC	1 cut(s)	875
ZrmI	AGTACT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.