Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008437

Physical Location & Seq

Genomic Coordinates Reverse (-)

623309 .. 628437

Gene Structure 5129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1006500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1449 bp

ATGGACAAAGGAGTGACTCCTAGCCTCTTTGTTAATGATGGTTCATTCATGGAAAGGTTCAGACAACTTCAACAAGAGAAGGATAAAGATAAGGGTTCGGCAGCAGACGAGTCTAGACCAAGTAAAGTTGTTTCAGGGACTTTGACTACTACCACCACTGGTAAAACCAGTGCTGAACTGAAGGCTAATGATGCACGCAAGGTGGCCGCTGCTTCAGGTAGCAAACTTGCTTTCAGCTTGAAACAGAAGTCAAAGATTGTTGCACCACCTGTTAAGTTAGGTGCAGATGAGGATGAAGATGAAGCAGATGCTGCAAATGTTGCAGCTGCTGCACCAACTAAACGGCAAAAGTTGGGTCAGCCGGATCCCGTAGAGGAATCATACAGACAAGTGGATGTTGCCCCACCTTCCCCAACTGATTCAACAGTGAAGATAGTTGCTGACAAACTAGCAAGTTTTGTGGCTAAACATGGAAGGCAATTTGAGCATATTACACGGCAAAAAAATCTAGGAGATACCCCTTTCAAATTTTTATTTGACGAGAGCTGTTCTGATTACAAATATTATGAGTATCAGCTTGTTATTGAAGAGAGGGCCCTCCAACAGACCAGGGATTCACAAACATCTCGTAATGGAGGTACTAGCATATCAGCTTCCAAATCCACTAGTAGTTCCCAAAGGTCTACTGTGAAACATCCGAATTATCAAACTCCTGCCTCTGCTTTATATGATGCCACTGAGGGAAGGACAGGTGAGCTATCTGCACCAACAGGTGCAGATCCTATTGCCATGATGGAGTACTACGCGAATAAGGCTGCTCGGGAAGAGAGAAAGAGACAACCTAAACAATCAAAAGATGAAATGCCCCCTCCTGCTTCTCTTCAAGGTTCATTTTTGCTACCGATGGAACCAGAAGTTTCTATAGTTATTAAAACTTTCCCCATTTTGGCTCTAATTTTGGTTAGGATAGATGTACGTACATGGTCAAAATATTTGCTTTTCCTCACAATAAATACTTTTTTTTTTTTCGGTCCCTTCACAGCACCTTCTCTTAAGAAAGGTCATCACATGGGCGATTACATCCCACAAGAAGAGCTGGAGAAGTTTATGTCTGCTTGTAACGATGCAGCTGCACAAAAAGCTGCCAAAGAAGCTGCAGATAGGGCAAAAATCCAGGCTGATAATGTGGGTCATAAACTCTTGTCGAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGGAGCTCCAGAAGAGGAATTTCGGATCCAATAATGGCAGGTAATGTGAAGAAGGACAACCTGGGGGTTGGTGCTCAACAACCTGGAGAGGTGACTCCTGAAGATGATATATACGAACAGTATAAGAAGCGGATGATGCTTGGTTACCGATACAGACCCAATCCTCTGGTATTACCGAATTTTGCTTTCTCCTTTTGTGTTTGCCATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch Surp

Protein Analysis

483

Amino Acids

53.08

Weight (kDa)

8.7

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	146 - 191	1e-11	Surp module
G-patch	PF01585	394 - 437	2.2e-14	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52120 AT3G52120 AT3G52120 AT3G52120
fragaria_vesca	FvH4_7g00680 FvH4_7g00680
malus_domestica	MD02G1315400.v1.1 MD07G1006500.v1.1
prunus_persica	Prupe.2G009600_v2.0.a1 Prupe.2G009600_v2.0.a1 Prupe.2G009600_v2.0.a1
pyrus_communis	pycom02g26440 pycom07g00520
rosa_chinensis	RchiOBHm_Chr1g0314901
rosa_laevigata	RLG00000030756
rosa_multiflora	Rmu_sc0005168.1_g000002
rosa_roxburghii	Rroxscaffold_4G00331690
rosa_rugosa	Rorug01G0002800
rosa_samantha	Rh1AG013800 Rh1BG005400 Rh1CG012100 Rh1DG007200
rosa_wichuraiana	Rw1G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1265
AccI	GTMKAC	1 cut(s)	683
AccII	CGCG	1 cut(s)	806
AciI	CCGC	2 cut(s)	207, 1366
AclWI	GGATC	5 cut(s)	359, 372, 773, 1256, 1269
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	3 cut(s)	527, 1254, 1414
AcuI	CTGAAG	3 cut(s)	198, 200, 1356
AfaI	GTAC	4 cut(s)	640, 800, 975, 979
AfiI	CCNNNNNNNGG	1 cut(s)	946
AflII	CTTAAG	1 cut(s)	1052
AgsI	TTSAA	6 cut(s)	71, 241, 423, 526, 587, 884
AhlI	ACTAGT	1 cut(s)	665
AjnI	CCWGG	4 cut(s)	608, 1173, 1296, 1318
Alw21I	GWGCWC	2 cut(s)	1244, 1312
Alw26I	GTCTC	1 cut(s)	829
AlwI	GGATC	5 cut(s)	359, 372, 773, 1256, 1269
AlwNI	CAGNNNCTG	2 cut(s)	311, 329
Ama87I	CYCGRG	1 cut(s)	819
AoxI	GGCC	2 cut(s)	204, 594
ApaI	GGGCCC	1 cut(s)	598
ApoI	RAATTY	3 cut(s)	527, 1254, 1414
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
AspS9I	GGNCC	3 cut(s)	594, 595, 1031
AsuHPI	GGTGA	3 cut(s)	764, 1238, 1339
AvaI	CYCGRG	1 cut(s)	819
AvaII	GGWCC	1 cut(s)	1031
BaeGI	GKGCMC	1 cut(s)	598
BamHI	GGATCC	2 cut(s)	364, 1261
BanII	GRGCYC	2 cut(s)	598, 1244
Bbv12I	GWGCWC	2 cut(s)	1244, 1312
BccI	CCATC	3 cut(s)	32, 787, 898
BceAI	ACGGC	2 cut(s)	359, 512
BcgI	CGANNNNNNTGC	2 cut(s)	1112, 1146
BciT130I	CCWGG	4 cut(s)	610, 1175, 1298, 1320
BcoDI	GTCTC	1 cut(s)	829
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	6 cut(s)	21, 114, 449, 509, 642, 666
BfmI	CTRYAG	2 cut(s)	921, 1155
BfrI	CTTAAG	1 cut(s)	1052
BfuAI	ACCTGC	1 cut(s)	1265
BmcAI	AGTACT	1 cut(s)	800
Bme1390I	CCNGG	4 cut(s)	610, 1175, 1298, 1320
Bme18I	GGWCC	1 cut(s)	1031
BmeT110I	CYCGRG	1 cut(s)	819
BmgT120I	GGNCC	3 cut(s)	594, 595, 1031
BmiI	GGNNCC	5 cut(s)	366, 596, 909, 1033, 1263
BmrFI	CCNGG	4 cut(s)	610, 1175, 1298, 1320
BmsI	GCATC	5 cut(s)	181, 298, 721, 1114, 1362
BpmI	CTGGAG	3 cut(s)	1118, 1228, 1341
BsaAI	YACGTR	1 cut(s)	977
BsaJI	CCNNGG	2 cut(s)	609, 1297
Bsc4I	CCNNNNNNNGG	1 cut(s)	946
Bse1I	ACTGG	2 cut(s)	163, 168
BseBI	CCWGG	4 cut(s)	610, 1175, 1298, 1320
BseDI	CCNNGG	2 cut(s)	609, 1297
BseGI	GGATG	5 cut(s)	298, 400, 694, 1080, 1374
BseLI	CCNNNNNNNGG	1 cut(s)	946
BseMII	CTCAG	1 cut(s)	729
BseNI	ACTGG	2 cut(s)	163, 168
BseSI	GKGCMC	1 cut(s)	598
BsgI	GTGCAG	5 cut(s)	303, 315, 747, 795, 1116
Bsh1236I	CGCG	1 cut(s)	806
BshFI	GGCC	2 cut(s)	206, 596
BsiHKAI	GWGCWC	2 cut(s)	1244, 1312
BsiHKCI	CYCGRG	1 cut(s)	819
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	2 cut(s)	151, 1017
BslI	CCNNNNNNNGG	1 cut(s)	946
BsmAI	GTCTC	1 cut(s)	829
BsmFI	GGGAC	2 cut(s)	151, 1017
BsnI	GGCC	2 cut(s)	206, 596
BsoBI	CYCGRG	1 cut(s)	819
Bsp120I	GGGCCC	1 cut(s)	594
Bsp1286I	GDGCHC	3 cut(s)	598, 1244, 1312
Bsp143I	GATC	3 cut(s)	364, 778, 1261
BspACI	CCGC	2 cut(s)	207, 1366
BspANI	GGCC	2 cut(s)	206, 596
BspCNI	CTCAG	1 cut(s)	730
BspFNI	CGCG	1 cut(s)	806
BspLI	GGNNCC	5 cut(s)	366, 596, 909, 1033, 1263
BspMAI	CTGCAG	1 cut(s)	1159
BspMI	ACCTGC	1 cut(s)	1265
BspPI	GGATC	5 cut(s)	359, 372, 773, 1256, 1269
BspQI	GCTCTTC	1 cut(s)	1086
BspTI	CTTAAG	1 cut(s)	1052
BsrI	ACTGG	2 cut(s)	163, 168
BssECI	CCNNGG	2 cut(s)	609, 1297
BssMI	GATC	3 cut(s)	364, 778, 1261
Bst2UI	CCWGG	4 cut(s)	610, 1175, 1298, 1320
Bst4CI	ACNGT	3 cut(s)	427, 688, 1356
Bst6I	CTCTTC	5 cut(s)	582, 819, 885, 1086, 1243
BstAFI	CTTAAG	1 cut(s)	1052
BstAPI	GCANNNNNTGC	3 cut(s)	311, 320, 329
BstBAI	YACGTR	1 cut(s)	977
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	1 cut(s)	738
BstEII	GGTNACC	1 cut(s)	1379
BstF5I	GGATG	5 cut(s)	298, 400, 694, 1080, 1374
BstFNI	CGCG	1 cut(s)	806
BstKTI	GATC	3 cut(s)	367, 781, 1264
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	3 cut(s)	364, 778, 1261
BstNI	CCWGG	4 cut(s)	610, 1175, 1298, 1320
BstPI	GGTNACC	1 cut(s)	1379
BstSCI	CCNGG	4 cut(s)	608, 1173, 1296, 1318
BstSFI	CTRYAG	2 cut(s)	921, 1155
BstSLI	GKGCMC	1 cut(s)	598
BstSNI	TACGTA	1 cut(s)	977
BstUI	CGCG	1 cut(s)	806
BstX2I	RGATCY	3 cut(s)	364, 778, 1261
BstXI	CCANNNNNNTGG	1 cut(s)	1402
BstYI	RGATCY	3 cut(s)	364, 778, 1261
BsuRI	GGCC	2 cut(s)	206, 596
BtsCI	GGATG	5 cut(s)	298, 400, 694, 1080, 1374
BtsIMutI	CAGTG	4 cut(s)	156, 175, 432, 735
BveI	ACCTGC	1 cut(s)	1265
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	2 cut(s)	311, 329
Cfr13I	GGNCC	3 cut(s)	594, 595, 1031
Csp6I	GTAC	4 cut(s)	639, 799, 974, 978
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviAII	CATG	6 cut(s)	49, 470, 790, 981, 1069, 1442
CviQI	GTAC	4 cut(s)	639, 799, 974, 978
DdeI	CTNAG	1 cut(s)	738
DpnI	GATC	3 cut(s)	366, 780, 1263
DpnII	GATC	3 cut(s)	364, 778, 1261
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	5 cut(s)	582, 819, 885, 1086, 1243
EarI	CTCTTC	5 cut(s)	582, 819, 885, 1086, 1243
Ecl136II	GAGCTC	1 cut(s)	1242
Eco105I	TACGTA	1 cut(s)	977
Eco24I	GRGCYC	2 cut(s)	598, 1244
Eco47I	GGWCC	1 cut(s)	1031
Eco53kI	GAGCTC	1 cut(s)	1242
Eco57I	CTGAAG	3 cut(s)	198, 200, 1356
Eco88I	CYCGRG	1 cut(s)	819
Eco91I	GGTNACC	1 cut(s)	1379
EcoICRI	GAGCTC	1 cut(s)	1242
EcoO109I	RGGNCCY	2 cut(s)	594, 595
EcoO65I	GGTNACC	1 cut(s)	1379
EcoRII	CCWGG	4 cut(s)	608, 1173, 1296, 1318
EcoT38I	GRGCYC	2 cut(s)	598, 1244
FaeI	CATG	6 cut(s)	52, 473, 793, 984, 1072, 1445
FaqI	GGGAC	2 cut(s)	151, 1017
FatI	CATG	6 cut(s)	48, 469, 789, 980, 1068, 1441
FblI	GTMKAC	1 cut(s)	683
FokI	GGATG	5 cut(s)	305, 407, 681, 1067, 1381
FriOI	GRGCYC	2 cut(s)	598, 1244
FspBI	CTAG	6 cut(s)	21, 114, 449, 509, 642, 666
GsuI	CTGGAG	3 cut(s)	1118, 1228, 1341
HaeIII	GGCC	2 cut(s)	206, 596
HapII	CCGG	1 cut(s)	362
Hin1II	CATG	6 cut(s)	52, 473, 793, 984, 1072, 1445
HinfI	GANTC	6 cut(s)	16, 110, 377, 419, 614, 1330
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	3 cut(s)	764, 1238, 1339
Hpy166II	GTNNAC	1 cut(s)	684
Hpy188I	TCNGA	4 cut(s)	62, 553, 699, 1261
Hpy188III	TCNNGA	4 cut(s)	114, 821, 1245, 1334
Hpy8I	GTNNAC	1 cut(s)	684
HpyAV	CCTTC	9 cut(s)	73, 175, 417, 468, 738, 1045, 1056, 1217, 1282
HpyCH4III	ACNGT	3 cut(s)	427, 688, 1356
HpyCH4IV	ACGT	1 cut(s)	976
HpyF3I	CTNAG	1 cut(s)	738
HpySE526I	ACGT	1 cut(s)	976
Hsp92II	CATG	6 cut(s)	52, 473, 793, 984, 1072, 1445
Kzo9I	GATC	3 cut(s)	364, 778, 1261
LguI	GCTCTTC	1 cut(s)	1086
LmnI	GCTCC	2 cut(s)	1239, 1247
LweI	GCATC	5 cut(s)	181, 298, 721, 1114, 1362
MaeI	CTAG	6 cut(s)	21, 114, 449, 509, 642, 666
MaeII	ACGT	1 cut(s)	976
MaeIII	GTNAC	4 cut(s)	13, 1118, 1327, 1379
MalI	GATC	3 cut(s)	366, 780, 1263
MboI	GATC	3 cut(s)	364, 778, 1261
MboII	GAAGA	9 cut(s)	308, 442, 599, 836, 872, 1103, 1260, 1297, 1349
MflI	RGATCY	3 cut(s)	364, 778, 1261
MhlI	GDGCHC	3 cut(s)	598, 1244, 1312
MluCI	AATT	6 cut(s)	479, 527, 700, 954, 1254, 1414
MlyI	GAGTC	3 cut(s)	10, 119, 1324
MmeI	TCCRAC	2 cut(s)	625, 1196
MseI	TTAA	4 cut(s)	33, 273, 930, 1053
MspA1I	CMGCKG	3 cut(s)	209, 326, 1130
MspCI	CTTAAG	1 cut(s)	1052
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	4 cut(s)	610, 1175, 1298, 1320
MvaI	CCWGG	4 cut(s)	610, 1175, 1298, 1320
MvnI	CGCG	1 cut(s)	806
NdeII	GATC	3 cut(s)	364, 778, 1261
NlaIII	CATG	6 cut(s)	52, 473, 793, 984, 1072, 1445
NlaIV	GGNNCC	5 cut(s)	366, 596, 909, 1033, 1263
NmuCI	GTSAC	2 cut(s)	13, 1327
PciSI	GCTCTTC	1 cut(s)	1086
PfeI	GAWTC	3 cut(s)	377, 419, 614
PleI	GAGTC	3 cut(s)	10, 118, 1324
PpsI	GAGTC	3 cut(s)	10, 118, 1324
Ppu21I	YACGTR	1 cut(s)	977
Psp124BI	GAGCTC	1 cut(s)	1244
Psp6I	CCWGG	4 cut(s)	608, 1173, 1296, 1318
PspEI	GGTNACC	1 cut(s)	1379
PspGI	CCWGG	4 cut(s)	608, 1173, 1296, 1318
PspN4I	GGNNCC	5 cut(s)	366, 596, 909, 1033, 1263
PspOMI	GGGCCC	1 cut(s)	594
PspPI	GGNCC	3 cut(s)	594, 595, 1031
PstI	CTGCAG	1 cut(s)	1159
PstNI	CAGNNNCTG	2 cut(s)	311, 329
PsuI	RGATCY	3 cut(s)	364, 778, 1261
PvuII	CAGCTG	2 cut(s)	326, 1130
RsaI	GTAC	4 cut(s)	640, 800, 975, 979
RsaNI	GTAC	4 cut(s)	639, 799, 974, 978
SacI	GAGCTC	1 cut(s)	1244
SapI	GCTCTTC	1 cut(s)	1086
SaqAI	TTAA	4 cut(s)	33, 273, 930, 1053
Sau3AI	GATC	3 cut(s)	364, 778, 1261
Sau96I	GGNCC	3 cut(s)	594, 595, 1031
ScaI	AGTACT	1 cut(s)	800
SchI	GAGTC	3 cut(s)	10, 119, 1324
ScrFI	CCNGG	4 cut(s)	610, 1175, 1298, 1320
SduI	GDGCHC	3 cut(s)	598, 1244, 1312
SfaNI	GCATC	5 cut(s)	181, 298, 721, 1114, 1362
SfcI	CTRYAG	2 cut(s)	921, 1155
SinI	GGWCC	1 cut(s)	1031
SmlI	CTYRAG	1 cut(s)	1052
SmoI	CTYRAG	1 cut(s)	1052
SnaBI	TACGTA	1 cut(s)	977
SpeI	ACTAGT	1 cut(s)	665
Sse9I	AATT	6 cut(s)	479, 527, 700, 954, 1254, 1414
SsiI	CCGC	2 cut(s)	207, 1366
SspI	AATATT	2 cut(s)	563, 992
SspMI	CTAG	6 cut(s)	21, 114, 449, 509, 642, 666
SstI	GAGCTC	1 cut(s)	1244
StyD4I	CCNGG	4 cut(s)	608, 1173, 1296, 1318
TaaI	ACNGT	3 cut(s)	427, 688, 1356
TaiI	ACGT	1 cut(s)	979
TaqI	TCGA	1 cut(s)	1205
TaqII	GACCGA	1 cut(s)	1019
TasI	AATT	6 cut(s)	479, 527, 700, 954, 1254, 1414
TatI	WGTACW	1 cut(s)	798
TauI	GCSGC	1 cut(s)	209
TfiI	GAWTC	3 cut(s)	377, 419, 614
Tru1I	TTAA	4 cut(s)	33, 273, 930, 1053
Tru9I	TTAA	4 cut(s)	33, 273, 930, 1053
TscAI	CASTG	4 cut(s)	163, 175, 432, 742
TseFI	GTSAC	2 cut(s)	13, 1327
Tsp45I	GTSAC	2 cut(s)	13, 1327
TspDTI	ATGAA	6 cut(s)	33, 37, 309, 315, 873, 879
TspRI	CASTG	4 cut(s)	163, 175, 432, 742
Vha464I	CTTAAG	1 cut(s)	1052
VpaK11BI	GGWCC	1 cut(s)	1031
XapI	RAATTY	3 cut(s)	527, 1254, 1414
XbaI	TCTAGA	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	683
XspI	CTAG	6 cut(s)	21, 114, 449, 509, 642, 666
ZrmI	AGTACT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.