Rorug01G0002800

SURP and G-patch domain-containing protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008437
Physical Location & Seq
Forward (+)
591627 .. 591956
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0002800.1

Sequence Viewer

Length: 330 bp
ATGGAATTCTCCTCCTCAAAATCCAGTATCAAACTGAATTTTGATGGCTCAGTTTATACGAATAATCAAGGTGCTGCAGGTTTTGTAATTCGTAATGACCAGGGTTTGCCCATTTTAACTTCCTCAAAAAAGTTAGGCCCTTCAAATGTTTTGGTTTCAAAGGCAATAGCTCGCAGAGTTGGTCTACAAGCTGCAGTGCTAATTCATGGTTTTTCCAAAATCAAAGTGGAAGGAGATTCAAAGTTGCTTATTAATTGTATCTACAAGAAGATTGGTATTCCCTTGCGTATACGAGTTCTTGTCCATGATATCAAACATCCGGTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch Surp

Protein Analysis

109

Amino Acids

11.83

Weight (kDa)

10.2

Isoelectric Point (pI)

23.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 13 - 106 7.4e-11 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 68
AccI GTMKAC 2 cut(s) 184, 289
AcsI RAATTY 2 cut(s) 5, 37
AgsI TTSAA 3 cut(s) 144, 159, 240
AjnI CCWGG 1 cut(s) 99
AluBI AGCT 2 cut(s) 170, 191
AluI AGCT 2 cut(s) 170, 191
AoxI GGCC 1 cut(s) 136
ApeKI GCWGC 2 cut(s) 74, 191
ApoI RAATTY 2 cut(s) 5, 37
AseI ATTAAT 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 137
BbvI GCAGC 2 cut(s) 61, 178
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 1 cut(s) 101
BfmI CTRYAG 2 cut(s) 75, 192
BfuAI ACCTGC 1 cut(s) 68
BisI GCNGC 2 cut(s) 75, 192
BlsI GCNGC 2 cut(s) 76, 193
Bme1390I CCNGG 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 137
BmrFI CCNGG 1 cut(s) 101
BsaJI CCNNGG 1 cut(s) 100
BsaWI WCCGGW 1 cut(s) 319
Bse1I ACTGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 101
BseDI CCNNGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 316
BseMII CTCAG 1 cut(s) 63
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 1 cut(s) 4
BseXI GCAGC 2 cut(s) 61, 178
BshFI GGCC 1 cut(s) 138
BsiSI CCGG 1 cut(s) 320
BsnI GGCC 1 cut(s) 138
BspANI GGCC 1 cut(s) 138
BspCNI CTCAG 1 cut(s) 62
BspMAI CTGCAG 2 cut(s) 79, 196
BspMI ACCTGC 1 cut(s) 68
BsrI ACTGG 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 100
BssNAI GTATAC 1 cut(s) 290
Bst1107I GTATAC 1 cut(s) 290
Bst2UI CCWGG 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 49
BstF5I GGATG 1 cut(s) 316
BstNI CCWGG 1 cut(s) 101
BstSCI CCNGG 1 cut(s) 99
BstSFI CTRYAG 2 cut(s) 75, 192
BstV1I GCAGC 2 cut(s) 61, 178
BstZ17I GTATAC 1 cut(s) 290
BsuRI GGCC 1 cut(s) 138
BtsCI GGATG 1 cut(s) 316
BtsI GCAGTG 1 cut(s) 201
BtsIMutI CAGTG 1 cut(s) 201
BveI ACCTGC 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 137
CviAII CATG 2 cut(s) 206, 305
CviJI RGCY 4 cut(s) 48, 138, 170, 191
CviKI_1 RGCY 4 cut(s) 48, 138, 170, 191
DdeI CTNAG 1 cut(s) 49
Eco32I GATATC 1 cut(s) 310
EcoO109I RGGNCCY 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 99
EcoRV GATATC 1 cut(s) 310
FaeI CATG 2 cut(s) 209, 308
FaiI YATR 4 cut(s) 57, 207, 290, 306
FatI CATG 2 cut(s) 205, 304
FblI GTMKAC 2 cut(s) 184, 289
Fnu4HI GCNGC 2 cut(s) 75, 192
FokI GGATG 1 cut(s) 303
Fsp4HI GCNGC 2 cut(s) 75, 192
GluI GCNGC 2 cut(s) 75, 192
HaeIII GGCC 1 cut(s) 138
HapII CCGG 1 cut(s) 320
Hin1II CATG 2 cut(s) 209, 308
HinfI GANTC 1 cut(s) 236
HpaII CCGG 1 cut(s) 320
Hpy166II GTNNAC 2 cut(s) 185, 290
Hpy8I GTNNAC 2 cut(s) 185, 290
HpyAV CCTTC 2 cut(s) 150, 224
HpyCH4V TGCA 2 cut(s) 77, 194
HpyF3I CTNAG 1 cut(s) 49
Hsp92II CATG 2 cut(s) 209, 308
LpnPI CCDG 4 cut(s) 37, 63, 86, 113
Lsp1109I GCAGC 2 cut(s) 61, 178
MboII GAAGA 1 cut(s) 280
MluCI AATT 5 cut(s) 5, 37, 87, 201, 253
MnlI CCTC 3 cut(s) 22, 25, 133
MseI TTAA 3 cut(s) 116, 252, 328
MspI CCGG 1 cut(s) 320
MspR9I CCNGG 1 cut(s) 101
MvaI CCWGG 1 cut(s) 101
NlaIII CATG 2 cut(s) 209, 308
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 2 cut(s) 76, 193
PshBI ATTAAT 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 99
PspGI CCWGG 1 cut(s) 99
PspPI GGNCC 1 cut(s) 137
PstI CTGCAG 2 cut(s) 79, 196
SaqAI TTAA 3 cut(s) 116, 252, 328
SatI GCNGC 2 cut(s) 75, 192
Sau96I GGNCC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 101
SetI ASST 4 cut(s) 73, 82, 172, 193
SfcI CTRYAG 2 cut(s) 75, 192
Sse9I AATT 5 cut(s) 5, 37, 87, 201, 253
StyD4I CCNGG 1 cut(s) 99
TasI AATT 5 cut(s) 5, 37, 87, 201, 253
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 3 cut(s) 116, 252, 328
Tru9I TTAA 3 cut(s) 116, 252, 328
TscAI CASTG 1 cut(s) 201
TseI GCWGC 2 cut(s) 74, 191
TspDTI ATGAA 1 cut(s) 194
TspRI CASTG 1 cut(s) 201
VspI ATTAAT 1 cut(s) 252
XapI RAATTY 2 cut(s) 5, 37
XcmI CCANNNNNNNNNTGG 1 cut(s) 223
XmiI GTMKAC 2 cut(s) 184, 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.