Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0008437

Physical Location & Seq

Genomic Coordinates Forward (+)

66931207 .. 66936712

Gene Structure 5506 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030756

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1452 bp

ATGTTAAAAAGAGAGAGAGACAGAGACGGTATCGGATTACAATCCCTGATTAGCCTCAAGCGTCTCCAATCCACCACTCGACCACCAGCATCAATATTTTTACTTCTGTGGATTCCTGTAAACAGCCTAAGCAAACTTGTCACCTTGCAAATGGACAAAGGAGTGACTCCTAGCCTCTTTGTTAATGATGGTTCATTCCTGGAAAGGTTCAAACAACTTCAACAAGAGAAGGAAAATGAGAGGGGTGGCGGTGGCGCTGCAGTAGAGGATTCTAAGCTAGGTAAAGCTGTTTCAGGGAACCTTACCATTGGTAAAACCGGTACTGAATCGAAGGCTAATGATACACGCAAGACCACGCATGCTGCTTCGGGTGGTAAACTTGCTTTCAGCTTGAAACAGAAGTCAAAGATTGTGGCCCCTCCTGTTAAGTTAGGAGCAGATGAGGATGAAGATGGAGCAGATATTGTAAATGTTTCTGGTGATGCACCAACTAAACGACAAAAGTTGGGTCAGCCAGATGTGGCAGAGGAATCTTCTGGACAAGTGGATGTTGCACCACCTTCCCCAACTGATTCTACAGTGAAGATAGTTGCTGACAAACTAGCAAGTTTTGTGGCTAAACATGGAAGGCAATTTGAGCATATTACACGACAAAAAAATCCAGGAGATAACCCCTTCAAATTTTTATTTGATGAGAGCTGTGCTGATTACAAGTATTATGAATATCGGCTTGCTGATGAGGAGAAAGCCCTCAGACAGACCAGGGAGTTTGAATCATCACGTAATGGAGGTTCAAGCATGTCAGCTTCTAAATACACAAGTGGTTCCCACAGGTCTACTTTGAAGCATCCAAGTTATCAAACTCCTGCCTCTGCATTGTATGAAGCCACCGAGGATCCAACATATGGGACTTCATTGGGAAGGACAGGTGAGTCTAGTGGGCCAACAGGTGCAGATCCTATTGCCATGATGGAATTCTATGTGAAAAAGGCAGCACAAGAAGAGAGGAAGAGACAACCTAAACAGTCAAAAGATGAAATGCCCCCACCTGCATCTCTTCAAGCGCCTTCGCTTAAAAAAGGTCACCACATGGGCGATTACATCCCACAAGAAGAGCTGGAGAAGTTCATGGCTGCTTGTAATGATGCAGCTGCGCAGAAAGCTGCCAAAGAAGCTGCAGATAGGGCCAAAATACAGGCTGATAATGTGGGTCATAAACTCTTGTCTAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGAAGCTCCAGAAGAGGAATTTCAGATCCCATTATGGCAGGTAATGTCAAGAAGGATAATTTGGGGGTTGGTGCTCAACAACCTGGAGAGGTGACTCCTGAAGATGATATATACGAGCAGTACAAGAAGCGGATGATGCTTGGTTATCGTTACAGACCTAATCCTCTGAACAATCCGCGTAAAGCATACTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch Surp

Protein Analysis

484

Amino Acids

52.87

Weight (kDa)

9.03

Isoelectric Point (pI)

43.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Surp	PF01805	197 - 245	6.5e-13	Surp module
G-patch	PF01585	401 - 444	2.2e-14	G-patch domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52120 AT3G52120 AT3G52120 AT3G52120
fragaria_vesca	FvH4_7g00680 FvH4_7g00680
malus_domestica	MD02G1315400.v1.1 MD07G1006500.v1.1
prunus_persica	Prupe.2G009600_v2.0.a1 Prupe.2G009600_v2.0.a1 Prupe.2G009600_v2.0.a1
pyrus_communis	pycom02g26440 pycom07g00520
rosa_chinensis	RchiOBHm_Chr1g0314901
rosa_laevigata	RLG00000030756
rosa_multiflora	Rmu_sc0005168.1_g000002
rosa_roxburghii	Rroxscaffold_4G00331690
rosa_rugosa	Rorug01G0002800
rosa_samantha	Rh1AG013800 Rh1BG005400 Rh1CG012100 Rh1DG007200
rosa_wichuraiana	Rw1G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1057
AasI	GACNNNNNNGTC	1 cut(s)	931
Acc16I	TGCGCA	1 cut(s)	1155
Acc36I	ACCTGC	2 cut(s)	1057, 1286
AccB7I	CCANNNNNTGG	1 cut(s)	905
AccI	GTMKAC	1 cut(s)	836
AccII	CGCG	1 cut(s)	1435
AciI	CCGC	3 cut(s)	249, 1387, 1433
AclWI	GGATC	4 cut(s)	890, 903, 950, 1277
AcsI	RAATTY	3 cut(s)	680, 974, 1275
AcuI	CTGAAG	1 cut(s)	1377
AfaI	GTAC	2 cut(s)	322, 1379
AfiI	CCNNNNNNNGG	1 cut(s)	905
AgeI	ACCGGT	1 cut(s)	317
AgsI	TTSAA	8 cut(s)	211, 221, 394, 679, 773, 795, 844, 1061
AjnI	CCWGG	4 cut(s)	198, 661, 761, 1339
AjuI	GAANNNNNNNTTGG	2 cut(s)	1301, 1333
Alw21I	GWGCWC	1 cut(s)	1333
Alw26I	GTCTC	4 cut(s)	12, 18, 68, 1006
AlwI	GGATC	4 cut(s)	890, 903, 950, 1277
AoxI	GGCC	3 cut(s)	414, 941, 1185
ApeKI	GCWGC	8 cut(s)	257, 362, 992, 1133, 1148, 1151, 1163, 1175
ApoI	RAATTY	3 cut(s)	680, 974, 1275
ArsI	GACNNNNNNTTYG	2 cut(s)	493, 525
AsiGI	ACCGGT	1 cut(s)	317
AspLEI	GCGC	3 cut(s)	257, 1066, 1156
AspS9I	GGNCC	3 cut(s)	415, 941, 1185
AsuHPI	GGTGA	6 cut(s)	133, 491, 941, 1076, 1259, 1360
BamHI	GGATCC	1 cut(s)	895
Bbv12I	GWGCWC	1 cut(s)	1333
BbvI	GCAGC	8 cut(s)	244, 349, 1004, 1120, 1138, 1150, 1160, 1162
BccI	CCATC	3 cut(s)	182, 446, 964
BciT130I	CCWGG	4 cut(s)	200, 663, 763, 1341
BcoDI	GTCTC	4 cut(s)	12, 18, 68, 1006
BfaI	CTAG	4 cut(s)	171, 278, 602, 936
BfmI	CTRYAG	3 cut(s)	258, 576, 1176
BfoI	RGCGCY	2 cut(s)	258, 1067
BfuAI	ACCTGC	2 cut(s)	1057, 1286
BisI	GCNGC	8 cut(s)	258, 363, 993, 1134, 1149, 1152, 1164, 1176
BlsI	GCNGC	8 cut(s)	259, 364, 994, 1135, 1150, 1153, 1165, 1177
Bme1390I	CCNGG	4 cut(s)	200, 663, 763, 1341
BmgT120I	GGNCC	3 cut(s)	415, 941, 1185
BmiI	GGNNCC	4 cut(s)	299, 417, 826, 897
BmrFI	CCNGG	4 cut(s)	200, 663, 763, 1341
BmsI	GCATC	6 cut(s)	98, 472, 856, 1061, 1135, 1383
BpmI	CTGGAG	3 cut(s)	1139, 1249, 1362
Bpu10I	CCTNAGC	1 cut(s)	128
BpuEI	CTTGAG	1 cut(s)	41
BsaAI	YACGTR	1 cut(s)	782
BsaBI	GATNNNNATC	1 cut(s)	40
BsaJI	CCNNGG	2 cut(s)	762, 891
BsaWI	WCCGGW	1 cut(s)	317
Bsc4I	CCNNNNNNNGG	1 cut(s)	905
Bse118I	RCCGGY	1 cut(s)	317
Bse8I	GATNNNNATC	1 cut(s)	40
BseBI	CCWGG	4 cut(s)	200, 663, 763, 1341
BseDI	CCNNGG	2 cut(s)	762, 891
BseGI	GGATG	5 cut(s)	451, 553, 847, 1101, 1395
BseJI	GATNNNNATC	1 cut(s)	40
BseLI	CCNNNNNNNGG	1 cut(s)	905
BseMII	CTCAG	1 cut(s)	766
BseRI	GAGGAG	1 cut(s)	755
BseXI	GCAGC	8 cut(s)	244, 349, 1004, 1120, 1138, 1150, 1160, 1162
BsgI	GTGCAG	1 cut(s)	972
Bsh1236I	CGCG	1 cut(s)	1435
BshFI	GGCC	3 cut(s)	416, 943, 1187
BshTI	ACCGGT	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	1333
BsiSI	CCGG	1 cut(s)	318
BslFI	GGGAC	1 cut(s)	922
BslI	CCNNNNNNNGG	1 cut(s)	905
BsmAI	GTCTC	4 cut(s)	12, 18, 68, 1006
BsmBI	CGTCTC	2 cut(s)	18, 68
BsmFI	GGGAC	1 cut(s)	922
BsnI	GGCC	3 cut(s)	416, 943, 1187
Bsp1286I	GDGCHC	1 cut(s)	1333
Bsp143I	GATC	3 cut(s)	895, 955, 1282
BspACI	CCGC	3 cut(s)	249, 1387, 1433
BspANI	GGCC	3 cut(s)	416, 943, 1187
BspCNI	CTCAG	1 cut(s)	765
BspFNI	CGCG	1 cut(s)	1435
BspLI	GGNNCC	4 cut(s)	299, 417, 826, 897
BspMAI	CTGCAG	2 cut(s)	262, 1180
BspMI	ACCTGC	2 cut(s)	1057, 1286
BspPI	GGATC	4 cut(s)	890, 903, 950, 1277
BspQI	GCTCTTC	1 cut(s)	1107
BsrFI	RCCGGY	1 cut(s)	317
BssAI	RCCGGY	1 cut(s)	317
BssECI	CCNNGG	2 cut(s)	762, 891
BssMI	GATC	3 cut(s)	895, 955, 1282
Bst2UI	CCWGG	4 cut(s)	200, 663, 763, 1341
Bst4CI	ACNGT	3 cut(s)	29, 580, 1026
Bst6I	CTCTTC	5 cut(s)	996, 1004, 1062, 1107, 1264
BstBAI	YACGTR	1 cut(s)	782
BstC8I	GCNNGC	2 cut(s)	360, 732
BstDEI	CTNAG	3 cut(s)	128, 273, 752
BstEII	GGTNACC	1 cut(s)	1082
BstF5I	GGATG	5 cut(s)	451, 553, 847, 1101, 1395
BstFNI	CGCG	1 cut(s)	1435
BstH2I	RGCGCY	2 cut(s)	258, 1067
BstHHI	GCGC	3 cut(s)	257, 1066, 1156
BstKTI	GATC	3 cut(s)	898, 958, 1285
BstMAI	GTCTC	4 cut(s)	12, 18, 68, 1006
BstMBI	GATC	3 cut(s)	895, 955, 1282
BstMWI	GCNNNNNNNGC	5 cut(s)	637, 1160, 1172, 1184, 1393
BstNI	CCWGG	4 cut(s)	200, 663, 763, 1341
BstNSI	RCATGY	2 cut(s)	362, 802
BstPI	GGTNACC	1 cut(s)	1082
BstSCI	CCNGG	4 cut(s)	198, 661, 761, 1339
BstSFI	CTRYAG	3 cut(s)	258, 576, 1176
BstUI	CGCG	1 cut(s)	1435
BstV1I	GCAGC	8 cut(s)	244, 349, 1004, 1120, 1138, 1150, 1160, 1162
BstX2I	RGATCY	3 cut(s)	895, 955, 1282
BstYI	RGATCY	3 cut(s)	895, 955, 1282
BsuRI	GGCC	3 cut(s)	416, 943, 1187
BtsCI	GGATG	5 cut(s)	451, 553, 847, 1101, 1395
BtsIMutI	CAGTG	1 cut(s)	585
BveI	ACCTGC	2 cut(s)	1057, 1286
Cac8I	GCNNGC	2 cut(s)	360, 732
CfoI	GCGC	3 cut(s)	257, 1066, 1156
Cfr10I	RCCGGY	1 cut(s)	317
Cfr13I	GGNCC	3 cut(s)	415, 941, 1185
CseI	GACGC	1 cut(s)	50
Csp6I	GTAC	2 cut(s)	321, 1378
CspAI	ACCGGT	1 cut(s)	317
CspCI	CAANNNNNGTGG	4 cut(s)	393, 428, 594, 629
CviAII	CATG	6 cut(s)	359, 623, 799, 967, 1090, 1129
CviQI	GTAC	2 cut(s)	321, 1378
DdeI	CTNAG	3 cut(s)	128, 273, 752
DpnI	GATC	3 cut(s)	897, 957, 1284
DpnII	GATC	3 cut(s)	895, 955, 1282
DrdI	GACNNNNNNGTC	1 cut(s)	931
DseDI	GACNNNNNNGTC	1 cut(s)	931
Eam1104I	CTCTTC	5 cut(s)	996, 1004, 1062, 1107, 1264
EarI	CTCTTC	5 cut(s)	996, 1004, 1062, 1107, 1264
Eco57I	CTGAAG	1 cut(s)	1377
Eco91I	GGTNACC	1 cut(s)	1082
EcoO65I	GGTNACC	1 cut(s)	1082
EcoRI	GAATTC	1 cut(s)	974
EcoRII	CCWGG	4 cut(s)	198, 661, 761, 1339
Esp3I	CGTCTC	2 cut(s)	18, 68
FaeI	CATG	6 cut(s)	362, 626, 802, 970, 1093, 1132
FaqI	GGGAC	1 cut(s)	922
FatI	CATG	6 cut(s)	358, 622, 798, 966, 1089, 1128
FauNDI	CATATG	1 cut(s)	904
FblI	GTMKAC	1 cut(s)	836
Fnu4HI	GCNGC	8 cut(s)	258, 363, 993, 1134, 1149, 1152, 1164, 1176
FokI	GGATG	5 cut(s)	458, 560, 834, 1088, 1402
Fsp4HI	GCNGC	8 cut(s)	258, 363, 993, 1134, 1149, 1152, 1164, 1176
FspBI	CTAG	4 cut(s)	171, 278, 602, 936
FspI	TGCGCA	1 cut(s)	1155
GlaI	GCGC	3 cut(s)	256, 1065, 1155
GluI	GCNGC	8 cut(s)	258, 363, 993, 1134, 1149, 1152, 1164, 1176
GsuI	CTGGAG	3 cut(s)	1139, 1249, 1362
HaeII	RGCGCY	2 cut(s)	258, 1067
HaeIII	GGCC	3 cut(s)	416, 943, 1187
HapII	CCGG	1 cut(s)	318
HgaI	GACGC	1 cut(s)	50
HhaI	GCGC	3 cut(s)	257, 1066, 1156
Hin1II	CATG	6 cut(s)	362, 626, 802, 970, 1093, 1132
Hin6I	GCGC	3 cut(s)	255, 1064, 1154
HinP1I	GCGC	3 cut(s)	255, 1064, 1154
HinfI	GANTC	9 cut(s)	112, 166, 269, 326, 530, 572, 773, 932, 1351
HpaII	CCGG	1 cut(s)	318
HphI	GGTGA	6 cut(s)	133, 491, 941, 1076, 1259, 1360
Hpy166II	GTNNAC	3 cut(s)	121, 377, 837
Hpy188I	TCNGA	4 cut(s)	35, 755, 1282, 1425
Hpy188III	TCNNGA	4 cut(s)	537, 1266, 1306, 1355
Hpy8I	GTNNAC	3 cut(s)	121, 377, 837
HpyAV	CCTTC	9 cut(s)	223, 325, 570, 621, 685, 915, 1077, 1238, 1303
HpyCH4III	ACNGT	3 cut(s)	29, 580, 1026
HpyCH4IV	ACGT	1 cut(s)	781
HpyCH4V	TGCA	9 cut(s)	148, 260, 485, 554, 875, 953, 1052, 1148, 1178
HpyF10VI	GCNNNNNNNGC	5 cut(s)	637, 1160, 1172, 1184, 1393
HpyF3I	CTNAG	3 cut(s)	128, 273, 752
HpySE526I	ACGT	1 cut(s)	781
Hsp92II	CATG	6 cut(s)	362, 626, 802, 970, 1093, 1132
HspAI	GCGC	3 cut(s)	255, 1064, 1154
Kzo9I	GATC	3 cut(s)	895, 955, 1282
LguI	GCTCTTC	1 cut(s)	1107
LmnI	GCTCC	3 cut(s)	434, 455, 1268
Lsp1109I	GCAGC	8 cut(s)	244, 349, 1004, 1120, 1138, 1150, 1160, 1162
LweI	GCATC	6 cut(s)	98, 472, 856, 1061, 1135, 1383
MaeI	CTAG	4 cut(s)	171, 278, 602, 936
MaeII	ACGT	1 cut(s)	781
MaeIII	GTNAC	5 cut(s)	139, 163, 1082, 1348, 1406
MalI	GATC	3 cut(s)	897, 957, 1284
MboI	GATC	3 cut(s)	895, 955, 1282
MboII	GAAGA	9 cut(s)	461, 525, 595, 1013, 1021, 1049, 1124, 1281, 1370
MflI	RGATCY	3 cut(s)	895, 955, 1282
MhlI	GDGCHC	1 cut(s)	1333
MluCI	AATT	5 cut(s)	632, 680, 974, 1275, 1315
MlyI	GAGTC	3 cut(s)	160, 941, 1345
MmeI	TCCRAC	2 cut(s)	923, 1217
MseI	TTAA	4 cut(s)	5, 183, 426, 1074
MspA1I	CMGCKG	1 cut(s)	1151
MspI	CCGG	1 cut(s)	318
MspR9I	CCNGG	4 cut(s)	200, 663, 763, 1341
MvaI	CCWGG	4 cut(s)	200, 663, 763, 1341
MvnI	CGCG	1 cut(s)	1435
MwoI	GCNNNNNNNGC	5 cut(s)	637, 1160, 1172, 1184, 1393
NdeI	CATATG	1 cut(s)	904
NdeII	GATC	3 cut(s)	895, 955, 1282
NlaIII	CATG	6 cut(s)	362, 626, 802, 970, 1093, 1132
NlaIV	GGNNCC	4 cut(s)	299, 417, 826, 897
NmuCI	GTSAC	4 cut(s)	139, 163, 1082, 1348
NsbI	TGCGCA	1 cut(s)	1155
NspI	RCATGY	2 cut(s)	362, 802
PaeI	GCATGC	1 cut(s)	362
PaqCI	CACCTGC	1 cut(s)	1057
PciSI	GCTCTTC	1 cut(s)	1107
PfeI	GAWTC	6 cut(s)	112, 269, 326, 530, 572, 773
PflMI	CCANNNNNTGG	1 cut(s)	905
PfoI	TCCNGGA	2 cut(s)	198, 661
PinAI	ACCGGT	1 cut(s)	317
PkrI	GCNGC	8 cut(s)	259, 364, 994, 1135, 1150, 1153, 1165, 1177
PleI	GAGTC	3 cut(s)	160, 940, 1345
PpsI	GAGTC	3 cut(s)	160, 940, 1345
Ppu21I	YACGTR	1 cut(s)	782
Psp6I	CCWGG	4 cut(s)	198, 661, 761, 1339
PspEI	GGTNACC	1 cut(s)	1082
PspGI	CCWGG	4 cut(s)	198, 661, 761, 1339
PspN4I	GGNNCC	4 cut(s)	299, 417, 826, 897
PspPI	GGNCC	3 cut(s)	415, 941, 1185
PsrI	GAACNNNNNNTAC	2 cut(s)	775, 807
PstI	CTGCAG	2 cut(s)	262, 1180
PsuI	RGATCY	3 cut(s)	895, 955, 1282
PvuII	CAGCTG	1 cut(s)	1151
RsaI	GTAC	2 cut(s)	322, 1379
RsaNI	GTAC	2 cut(s)	321, 1378
SapI	GCTCTTC	1 cut(s)	1107
SaqAI	TTAA	4 cut(s)	5, 183, 426, 1074
SatI	GCNGC	8 cut(s)	258, 363, 993, 1134, 1149, 1152, 1164, 1176
Sau3AI	GATC	3 cut(s)	895, 955, 1282
Sau96I	GGNCC	3 cut(s)	415, 941, 1185
SchI	GAGTC	3 cut(s)	160, 941, 1345
ScrFI	CCNGG	4 cut(s)	200, 663, 763, 1341
SduI	GDGCHC	1 cut(s)	1333
SfaNI	GCATC	6 cut(s)	98, 472, 856, 1061, 1135, 1383
SfcI	CTRYAG	3 cut(s)	258, 576, 1176
SmlI	CTYRAG	1 cut(s)	56
SmoI	CTYRAG	1 cut(s)	56
SphI	GCATGC	1 cut(s)	362
Sse9I	AATT	5 cut(s)	632, 680, 974, 1275, 1315
SsiI	CCGC	3 cut(s)	249, 1387, 1433
SspI	AATATT	1 cut(s)	96
SspMI	CTAG	4 cut(s)	171, 278, 602, 936
StyD4I	CCNGG	4 cut(s)	198, 661, 761, 1339
TaaI	ACNGT	3 cut(s)	29, 580, 1026
TaiI	ACGT	1 cut(s)	784
TaqI	TCGA	2 cut(s)	79, 329
TasI	AATT	5 cut(s)	632, 680, 974, 1275, 1315
TatI	WGTACW	1 cut(s)	1377
TfiI	GAWTC	6 cut(s)	112, 269, 326, 530, 572, 773
Tru1I	TTAA	4 cut(s)	5, 183, 426, 1074
Tru9I	TTAA	4 cut(s)	5, 183, 426, 1074
TscAI	CASTG	1 cut(s)	585
TseFI	GTSAC	4 cut(s)	139, 163, 1082, 1348
TseI	GCWGC	8 cut(s)	257, 362, 992, 1133, 1148, 1151, 1163, 1175
Tsp45I	GTSAC	4 cut(s)	139, 163, 1082, 1348
TspDTI	ATGAA	7 cut(s)	183, 462, 735, 897, 903, 1050, 1117
TspRI	CASTG	1 cut(s)	585
Van91I	CCANNNNNTGG	1 cut(s)	905
XapI	RAATTY	3 cut(s)	680, 974, 1275
XceI	RCATGY	2 cut(s)	362, 802
XmiI	GTMKAC	1 cut(s)	836
XspI	CTAG	4 cut(s)	171, 278, 602, 936

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.