Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0008437

Physical Location & Seq

Genomic Coordinates Reverse (-)

496664 .. 500599

Gene Structure 3936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g00520.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGACAAAGGAGTGACTCCTAGCCTCTTTGTTAATGATGGTTCGTTCATGGAAAGGTTCAGACAACTTCAACAAGAGAAGAATAAAGATAAGGGTTCCGCAGCAGACGAGTCTAGACCAAGTAAAGTTGTTTCAGGGACTTTGACTCCTACCACCACTGGTAAAACCAGTGCTGAACTGAAGGCTAATGATGCACGCAAGGTGGCCGCTGCTTCAGGTAGCAAACTTGCTTTCAGCTTGAAACAGAAATCAAAGATTGTTGCACCACCTGTTAAGTTAGGTGCTGATGAGGATGAAGATGAAGCAGATGCTGCAAATGTTGCAGCTGCTGCACCAACTAAACGGCAAAAGTTGGGTCAGCCGGATCCCGTAGAGGAATCATACAGACAAGTGGATGTTGCCCCACCTTCCCCAACTGATTCAACAGTGAAGATAGTTGCTGACAAACTAGCAAGTTTTGTGGCTAAACATGGAAGGCAATTTGAGCATATTACACGTCAAAAAAATCTAGGAGATACCCCTTTCAAATTTTTATTTGACGAGAGCTGTTCTGATTACAAATATTATGAGTATCAGCTTGTTATTGAAGAGAGGGCCCTCCAACAGACCAGGGATTCACAAACATCTCGTAATGGAGGTACTAGCATATCAGCTTCCAAATCCACTAGTAGTTCCCAAAGGTCTACTGTGAAGCATCTGAATTATCAAACTCCCGCCTCTGCTTTATATGATGCCACTGAGGGAAGGACAGGTGAGCTCTCTGCACCAACAGGTGCTGATCCTATTGCCATGATGGAGTACTATGCGAATAAGGCTGCTCAGGAAGAGAGAAAGAGACAACCTAAACAATCAAAAGATGAAATGCCCCCTCCTGCTTCTCTTCAAGCACCTTCTCTTAAGAAAGGTCATCACATGGGCGATTACATTCCACAAGAAGAGCTGGAGAAGTTTATGTCTGCTTGTAACGACGCAGCTGCACAAAAAGCTGCCAAAGAAGCCGCAGATAGGGCAAAAATCCAGGCTGATAATGTGGGCCATAAACTCTTGTCGAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGGAGCTCCAGAAGAGGAATTTCGGATCCAATAATGGCAGGTAATGTGAAGAAGGACAACCTGGGTGTTGGTGCTCAACAACCTGGAGAGGTGACTCCTGAAGATGATATATACGAACAGTATAAGAAGCGGATGATGCTTGGTTACCGATACAGACCCAATCCTCTGAACAATCCGCGGAAGGCGTACTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch Surp

Protein Analysis

425

Amino Acids

46.47

Weight (kDa)

8.89

Isoelectric Point (pI)

45.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52120 AT3G52120 AT3G52120 AT3G52120
fragaria_vesca	FvH4_7g00680 FvH4_7g00680
malus_domestica	MD02G1315400.v1.1 MD07G1006500.v1.1
prunus_persica	Prupe.2G009600_v2.0.a1 Prupe.2G009600_v2.0.a1 Prupe.2G009600_v2.0.a1
pyrus_communis	pycom02g26440 pycom07g00520
rosa_chinensis	RchiOBHm_Chr1g0314901
rosa_laevigata	RLG00000030756
rosa_multiflora	Rmu_sc0005168.1_g000002
rosa_roxburghii	Rroxscaffold_4G00331690
rosa_rugosa	Rorug01G0002800
rosa_samantha	Rh1AG013800 Rh1BG005400 Rh1CG012100 Rh1DG007200
rosa_wichuraiana	Rw1G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1109
AccI	GTMKAC	1 cut(s)	683
AccII	CGCG	1 cut(s)	1258
AciI	CCGC	7 cut(s)	99, 207, 714, 999, 1210, 1256, 1258
AclWI	GGATC	5 cut(s)	359, 372, 773, 1100, 1113
AcoI	YGGCCR	1 cut(s)	204
AcsI	RAATTY	2 cut(s)	527, 1098
AcuI	CTGAAG	3 cut(s)	198, 200, 1200
AfaI	GTAC	3 cut(s)	640, 800, 1268
AfiI	CCNNNNNNNGG	1 cut(s)	1005
AflII	CTTAAG	1 cut(s)	896
AflIII	ACRYGT	1 cut(s)	494
AgsI	TTSAA	6 cut(s)	71, 241, 423, 526, 587, 884
AhlI	ACTAGT	1 cut(s)	665
AjiI	CACGTC	1 cut(s)	497
AjnI	CCWGG	4 cut(s)	608, 1017, 1140, 1162
Alw21I	GWGCWC	3 cut(s)	759, 1088, 1156
Alw26I	GTCTC	1 cut(s)	829
AlwI	GGATC	5 cut(s)	359, 372, 773, 1100, 1113
AlwNI	CAGNNNCTG	3 cut(s)	311, 329, 776
AoxI	GGCC	3 cut(s)	204, 594, 1033
ApaI	GGGCCC	1 cut(s)	598
ApoI	RAATTY	2 cut(s)	527, 1098
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
AspS9I	GGNCC	3 cut(s)	594, 595, 1033
AsuHPI	GGTGA	3 cut(s)	764, 1082, 1183
BaeGI	GKGCMC	1 cut(s)	598
BamHI	GGATCC	2 cut(s)	364, 1105
BanII	GRGCYC	3 cut(s)	598, 759, 1088
BarI	GAAGNNNNNNTAC	1 cut(s)	1253
Bbv12I	GWGCWC	3 cut(s)	759, 1088, 1156
BccI	CCATC	2 cut(s)	32, 787
BceAI	ACGGC	1 cut(s)	359
BcgI	CGANNNNNNTGC	2 cut(s)	956, 990
BciT130I	CCWGG	4 cut(s)	610, 1019, 1142, 1164
BcoDI	GTCTC	1 cut(s)	829
BcuI	ACTAGT	1 cut(s)	665
BfaI	CTAG	6 cut(s)	21, 114, 449, 509, 642, 666
BfrI	CTTAAG	1 cut(s)	896
BfuAI	ACCTGC	1 cut(s)	1109
BmcAI	AGTACT	1 cut(s)	800
Bme1390I	CCNGG	4 cut(s)	610, 1019, 1142, 1164
BmgBI	CACGTC	1 cut(s)	497
BmgT120I	GGNCC	3 cut(s)	594, 595, 1033
BmiI	GGNNCC	4 cut(s)	97, 366, 596, 1107
BmrFI	CCNGG	4 cut(s)	610, 1019, 1142, 1164
BmsI	GCATC	5 cut(s)	181, 298, 703, 721, 1206
BpmI	CTGGAG	3 cut(s)	962, 1072, 1185
Bpu10I	CCTNAGC	1 cut(s)	819
BsaJI	CCNNGG	3 cut(s)	609, 1141, 1256
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	1005
Bse1I	ACTGG	2 cut(s)	163, 168
BseBI	CCWGG	4 cut(s)	610, 1019, 1142, 1164
BseDI	CCNNGG	3 cut(s)	609, 1141, 1256
BseGI	GGATG	3 cut(s)	298, 400, 1218
BseLI	CCNNNNNNNGG	1 cut(s)	1005
BseMII	CTCAG	2 cut(s)	729, 833
BseNI	ACTGG	2 cut(s)	163, 168
BseSI	GKGCMC	1 cut(s)	598
BsgI	GTGCAG	3 cut(s)	315, 747, 960
Bsh1236I	CGCG	1 cut(s)	1258
BshFI	GGCC	3 cut(s)	206, 596, 1035
BsiHKAI	GWGCWC	3 cut(s)	759, 1088, 1156
BsiSI	CCGG	1 cut(s)	362
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	1005
BsmAI	GTCTC	1 cut(s)	829
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	3 cut(s)	206, 596, 1035
Bsp120I	GGGCCC	1 cut(s)	594
Bsp1286I	GDGCHC	4 cut(s)	598, 759, 1088, 1156
Bsp143I	GATC	3 cut(s)	364, 778, 1105
BspACI	CCGC	7 cut(s)	99, 207, 714, 999, 1210, 1256, 1258
BspANI	GGCC	3 cut(s)	206, 596, 1035
BspCNI	CTCAG	2 cut(s)	730, 832
BspFNI	CGCG	1 cut(s)	1258
BspLI	GGNNCC	4 cut(s)	97, 366, 596, 1107
BspMI	ACCTGC	1 cut(s)	1109
BspPI	GGATC	5 cut(s)	359, 372, 773, 1100, 1113
BspQI	GCTCTTC	1 cut(s)	930
BspTI	CTTAAG	1 cut(s)	896
BsrI	ACTGG	2 cut(s)	163, 168
BssECI	CCNNGG	3 cut(s)	609, 1141, 1256
BssMI	GATC	3 cut(s)	364, 778, 1105
Bst2UI	CCWGG	4 cut(s)	610, 1019, 1142, 1164
Bst4CI	ACNGT	3 cut(s)	427, 688, 1200
Bst6I	CTCTTC	5 cut(s)	582, 819, 885, 930, 1087
BstAFI	CTTAAG	1 cut(s)	896
BstAPI	GCANNNNNTGC	3 cut(s)	311, 320, 329
BstC8I	GCNNGC	1 cut(s)	196
BstDEI	CTNAG	2 cut(s)	738, 819
BstDSI	CCRYGG	1 cut(s)	1256
BstEII	GGTNACC	1 cut(s)	1223
BstF5I	GGATG	3 cut(s)	298, 400, 1218
BstFNI	CGCG	1 cut(s)	1258
BstKTI	GATC	3 cut(s)	367, 781, 1108
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	3 cut(s)	364, 778, 1105
BstNI	CCWGG	4 cut(s)	610, 1019, 1142, 1164
BstPI	GGTNACC	1 cut(s)	1223
BstSCI	CCNGG	4 cut(s)	608, 1017, 1140, 1162
BstSLI	GKGCMC	1 cut(s)	598
BstUI	CGCG	1 cut(s)	1258
BstX2I	RGATCY	2 cut(s)	364, 1105
BstYI	RGATCY	2 cut(s)	364, 1105
BsuRI	GGCC	3 cut(s)	206, 596, 1035
BtgI	CCRYGG	1 cut(s)	1256
BtrI	CACGTC	1 cut(s)	497
BtsCI	GGATG	3 cut(s)	298, 400, 1218
BtsIMutI	CAGTG	4 cut(s)	156, 175, 432, 735
BveI	ACCTGC	1 cut(s)	1109
Cac8I	GCNNGC	1 cut(s)	196
CaiI	CAGNNNCTG	3 cut(s)	311, 329, 776
Cfr13I	GGNCC	3 cut(s)	594, 595, 1033
Cfr42I	CCGCGG	1 cut(s)	1259
CseI	GACGC	1 cut(s)	977
Csp6I	GTAC	3 cut(s)	639, 799, 1267
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviAII	CATG	4 cut(s)	49, 470, 790, 913
CviQI	GTAC	3 cut(s)	639, 799, 1267
DdeI	CTNAG	2 cut(s)	738, 819
DpnI	GATC	3 cut(s)	366, 780, 1107
DpnII	GATC	3 cut(s)	364, 778, 1105
EaeI	YGGCCR	1 cut(s)	204
Eam1104I	CTCTTC	5 cut(s)	582, 819, 885, 930, 1087
EarI	CTCTTC	5 cut(s)	582, 819, 885, 930, 1087
Ecl136II	GAGCTC	2 cut(s)	757, 1086
Eco24I	GRGCYC	3 cut(s)	598, 759, 1088
Eco53kI	GAGCTC	2 cut(s)	757, 1086
Eco57I	CTGAAG	3 cut(s)	198, 200, 1200
Eco91I	GGTNACC	1 cut(s)	1223
EcoICRI	GAGCTC	2 cut(s)	757, 1086
EcoO109I	RGGNCCY	2 cut(s)	594, 595
EcoO65I	GGTNACC	1 cut(s)	1223
EcoRII	CCWGG	4 cut(s)	608, 1017, 1140, 1162
EcoT38I	GRGCYC	3 cut(s)	598, 759, 1088
FaeI	CATG	4 cut(s)	52, 473, 793, 916
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	4 cut(s)	48, 469, 789, 912
FauI	CCCGC	1 cut(s)	721
FblI	GTMKAC	1 cut(s)	683
FokI	GGATG	3 cut(s)	305, 407, 1225
FriOI	GRGCYC	3 cut(s)	598, 759, 1088
FspBI	CTAG	6 cut(s)	21, 114, 449, 509, 642, 666
GsuI	CTGGAG	3 cut(s)	962, 1072, 1185
HaeIII	GGCC	3 cut(s)	206, 596, 1035
HapII	CCGG	1 cut(s)	362
HgaI	GACGC	1 cut(s)	977
Hin1II	CATG	4 cut(s)	52, 473, 793, 916
HinfI	GANTC	7 cut(s)	16, 110, 145, 377, 419, 614, 1174
HpaII	CCGG	1 cut(s)	362
HphI	GGTGA	3 cut(s)	764, 1082, 1183
Hpy166II	GTNNAC	1 cut(s)	684
Hpy188I	TCNGA	5 cut(s)	62, 553, 699, 1105, 1248
Hpy188III	TCNNGA	4 cut(s)	114, 821, 1089, 1178
Hpy8I	GTNNAC	1 cut(s)	684
Hpy99I	CGWCG	1 cut(s)	971
HpyAV	CCTTC	8 cut(s)	175, 417, 468, 738, 900, 1061, 1126, 1255
HpyCH4III	ACNGT	3 cut(s)	427, 688, 1200
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	7 cut(s)	194, 263, 314, 323, 332, 764, 977
HpyF3I	CTNAG	2 cut(s)	738, 819
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	4 cut(s)	52, 473, 793, 916
KspI	CCGCGG	1 cut(s)	1259
Kzo9I	GATC	3 cut(s)	364, 778, 1105
LguI	GCTCTTC	1 cut(s)	930
LmnI	GCTCC	2 cut(s)	1083, 1091
LweI	GCATC	5 cut(s)	181, 298, 703, 721, 1206
MaeI	CTAG	6 cut(s)	21, 114, 449, 509, 642, 666
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	4 cut(s)	13, 962, 1171, 1223
MalI	GATC	3 cut(s)	366, 780, 1107
MboI	GATC	3 cut(s)	364, 778, 1105
MflI	RGATCY	2 cut(s)	364, 1105
MhlI	GDGCHC	4 cut(s)	598, 759, 1088, 1156
MluCI	AATT	4 cut(s)	479, 527, 700, 1098
MlyI	GAGTC	4 cut(s)	10, 119, 139, 1168
MmeI	TCCRAC	2 cut(s)	625, 1040
MseI	TTAA	3 cut(s)	33, 273, 897
MspA1I	CMGCKG	4 cut(s)	209, 326, 974, 1258
MspCI	CTTAAG	1 cut(s)	896
MspI	CCGG	1 cut(s)	362
MspR9I	CCNGG	4 cut(s)	610, 1019, 1142, 1164
MvaI	CCWGG	4 cut(s)	610, 1019, 1142, 1164
MvnI	CGCG	1 cut(s)	1258
NdeII	GATC	3 cut(s)	364, 778, 1105
NlaIII	CATG	4 cut(s)	52, 473, 793, 916
NlaIV	GGNNCC	4 cut(s)	97, 366, 596, 1107
NmuCI	GTSAC	2 cut(s)	13, 1171
PciSI	GCTCTTC	1 cut(s)	930
PfeI	GAWTC	3 cut(s)	377, 419, 614
PleI	GAGTC	4 cut(s)	10, 118, 139, 1168
PpsI	GAGTC	4 cut(s)	10, 118, 139, 1168
Psp124BI	GAGCTC	2 cut(s)	759, 1088
Psp6I	CCWGG	4 cut(s)	608, 1017, 1140, 1162
PspEI	GGTNACC	1 cut(s)	1223
PspGI	CCWGG	4 cut(s)	608, 1017, 1140, 1162
PspN4I	GGNNCC	4 cut(s)	97, 366, 596, 1107
PspOMI	GGGCCC	1 cut(s)	594
PspPI	GGNCC	3 cut(s)	594, 595, 1033
PstNI	CAGNNNCTG	3 cut(s)	311, 329, 776
PsuI	RGATCY	2 cut(s)	364, 1105
PvuII	CAGCTG	2 cut(s)	326, 974
RsaI	GTAC	3 cut(s)	640, 800, 1268
RsaNI	GTAC	3 cut(s)	639, 799, 1267
SacI	GAGCTC	2 cut(s)	759, 1088
SacII	CCGCGG	1 cut(s)	1259
SapI	GCTCTTC	1 cut(s)	930
SaqAI	TTAA	3 cut(s)	33, 273, 897
Sau3AI	GATC	3 cut(s)	364, 778, 1105
Sau96I	GGNCC	3 cut(s)	594, 595, 1033
ScaI	AGTACT	1 cut(s)	800
SchI	GAGTC	4 cut(s)	10, 119, 139, 1168
ScrFI	CCNGG	4 cut(s)	610, 1019, 1142, 1164
SduI	GDGCHC	4 cut(s)	598, 759, 1088, 1156
SfaNI	GCATC	5 cut(s)	181, 298, 703, 721, 1206
Sfr303I	CCGCGG	1 cut(s)	1259
SgrBI	CCGCGG	1 cut(s)	1259
SmlI	CTYRAG	1 cut(s)	896
SmoI	CTYRAG	1 cut(s)	896
SpeI	ACTAGT	1 cut(s)	665
Sse9I	AATT	4 cut(s)	479, 527, 700, 1098
SsiI	CCGC	7 cut(s)	99, 207, 714, 999, 1210, 1256, 1258
SspI	AATATT	1 cut(s)	563
SspMI	CTAG	6 cut(s)	21, 114, 449, 509, 642, 666
SstI	GAGCTC	2 cut(s)	759, 1088
StyD4I	CCNGG	4 cut(s)	608, 1017, 1140, 1162
TaaI	ACNGT	3 cut(s)	427, 688, 1200
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	1 cut(s)	1049
TasI	AATT	4 cut(s)	479, 527, 700, 1098
TatI	WGTACW	1 cut(s)	798
TauI	GCSGC	2 cut(s)	209, 1001
TfiI	GAWTC	3 cut(s)	377, 419, 614
Tru1I	TTAA	3 cut(s)	33, 273, 897
Tru9I	TTAA	3 cut(s)	33, 273, 897
TscAI	CASTG	4 cut(s)	163, 175, 432, 742
TseFI	GTSAC	2 cut(s)	13, 1171
Tsp45I	GTSAC	2 cut(s)	13, 1171
TspDTI	ATGAA	4 cut(s)	37, 309, 315, 873
TspRI	CASTG	4 cut(s)	163, 175, 432, 742
Vha464I	CTTAAG	1 cut(s)	896
XapI	RAATTY	2 cut(s)	527, 1098
XbaI	TCTAGA	1 cut(s)	113
XmiI	GTMKAC	1 cut(s)	683
XspI	CTAG	6 cut(s)	21, 114, 449, 509, 642, 666
ZrmI	AGTACT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.