MD02G1315400.v1.1

SURP and G-patch domain-containing protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr02
OG0008437
Physical Location & Seq
Forward (+)
37016705 .. 37021168
4464 bp
Loading structure...
UTR
Exon/CDS
Intron
MD02G1315400.v1.1.491

Sequence Viewer

Length: 921 bp
ATGGACAAAGGAGTGACTCCTAGCCTCTTTGTTAATGATGGTTCATTCATGGAAAGGTTCAGACAACTTCAACAAGAGAAGGATAAAGATAAAGGTTCCGCAGCAGACGAGTCTAGACCAAGTAAAGTTGTTCCAGGGACCTTGACTCCTACCACCACCGGTAAAACCAGTGCTGAACTGAAGGCTAATGATGCACGCAAGGTTGCCGCTGCTTCAGGTAGCAAACTTGCTTTCAGCTTGAAACAGAAGTCAAAGATTGTCGCACCACCTGTTAAGTTAGGTGCGGATGAGGATGAAGATGAAGCAGATGCTGCAAATGTTGCAGCTGGTGTACCAACTAAACGGCAAAAGTTGGGTCAGCCGGATGCCGTAGAGGAATCATACAGACAAGTGGATGTTGCACCACCTTTCCCAACTGATTCAACAGTGAAGATAGTTGCTGACAAACTAGCAAGTTTTGTGGCTAAACATGGAAGACAATTTGAGCATATTACACGTCAAAAAAATCCAGGAGATACTCCTTTCAAATTTTTATTTGACGAGAGCTGTTCTGATTACAAATATTACGAGTATCAGCTTGCTATTGAAGAGAAAGCACTTCAACAGACCAGGGATTCACAAACATCTCGTAATGGAGGTACTAGCATGTCAGCTTCCAAATCCACAAGTAGTTCCCAAAGGTCTACTGTGAATCATCCGAACTACCAAACTTCCGCCTCTGCTTTATATGATGACACTGAGGGAAGGACAGGTGAGCTCACTGCACCAACAGGTGCAGATCCTATTGCCATGATGGAGTACTACGTGAAAAAGGCTGCTCAGGAAGAGAGAAAGAGACAACCTAAACAATCGAAAGATGAAATGCCCCCTCCTGCTTCTCTTCAAGGTTCATTTCTCATGGAAACCAGAAGTTTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch Surp

Protein Analysis

307

Amino Acids

33.48

Weight (kDa)

6.87

Isoelectric Point (pI)

46.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Surp PF01805 146 - 193 1.4e-12 Surp module
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 683
AciI CCGC 4 cut(s) 99, 207, 284, 714
AclWI GGATC 1 cut(s) 773
AcsI RAATTY 1 cut(s) 527
AcuI CTGAAG 2 cut(s) 198, 200
AfaI GTAC 3 cut(s) 333, 640, 800
AflIII ACRYGT 1 cut(s) 494
AgeI ACCGGT 1 cut(s) 158
AgsI TTSAA 7 cut(s) 71, 241, 423, 526, 587, 602, 884
AjiI CACGTC 1 cut(s) 497
AjnI CCWGG 3 cut(s) 133, 508, 608
AluBI AGCT 6 cut(s) 237, 326, 546, 577, 653, 757
AluI AGCT 6 cut(s) 237, 326, 546, 577, 653, 757
Alw21I GWGCWC 1 cut(s) 759
Alw26I GTCTC 1 cut(s) 829
AlwI GGATC 1 cut(s) 773
AlwNI CAGNNNCTG 1 cut(s) 311
ApeKI GCWGC 5 cut(s) 101, 209, 311, 323, 815
ApoI RAATTY 1 cut(s) 527
ArsI GACNNNNNNTTYG 2 cut(s) 340, 372
AsiGI ACCGGT 1 cut(s) 158
AspS9I GGNCC 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 764
AvaII GGWCC 1 cut(s) 138
BanII GRGCYC 1 cut(s) 759
BbsI GAAGAC 1 cut(s) 481
Bbv12I GWGCWC 1 cut(s) 759
BbvI GCAGC 5 cut(s) 113, 196, 298, 335, 802
BccI CCATC 2 cut(s) 32, 787
BceAI ACGGC 2 cut(s) 353, 359
BciT130I CCWGG 3 cut(s) 135, 510, 610
BcoDI GTCTC 1 cut(s) 829
BfaI CTAG 4 cut(s) 21, 114, 449, 642
BisI GCNGC 6 cut(s) 102, 207, 210, 312, 324, 816
BlsI GCNGC 6 cut(s) 103, 208, 211, 313, 325, 817
BmcAI AGTACT 1 cut(s) 800
Bme1390I CCNGG 3 cut(s) 135, 510, 610
Bme18I GGWCC 1 cut(s) 138
BmgBI CACGTC 1 cut(s) 497
BmgT120I GGNCC 1 cut(s) 138
BmiI GGNNCC 2 cut(s) 97, 139
BmrFI CCNGG 3 cut(s) 135, 510, 610
BmsI GCATC 3 cut(s) 181, 298, 355
BpiI GAAGAC 1 cut(s) 481
Bpu10I CCTNAGC 1 cut(s) 819
BsaAI YACGTR 1 cut(s) 805
BsaJI CCNNGG 2 cut(s) 134, 609
BsaWI WCCGGW 1 cut(s) 158
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 168
BseBI CCWGG 3 cut(s) 135, 510, 610
BseDI CCNNGG 2 cut(s) 134, 609
BseGI GGATG 5 cut(s) 292, 298, 370, 400, 694
BseMII CTCAG 2 cut(s) 729, 833
BseNI ACTGG 1 cut(s) 168
BseXI GCAGC 5 cut(s) 113, 196, 298, 335, 802
BsgI GTGCAG 2 cut(s) 747, 795
BshTI ACCGGT 1 cut(s) 158
BsiHKAI GWGCWC 1 cut(s) 759
BsiSI CCGG 2 cut(s) 159, 362
BslFI GGGAC 1 cut(s) 151
BsmAI GTCTC 1 cut(s) 829
BsmFI GGGAC 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 759
Bsp143I GATC 1 cut(s) 778
BspACI CCGC 4 cut(s) 99, 207, 284, 714
BspCNI CTCAG 2 cut(s) 730, 832
BspLI GGNNCC 2 cut(s) 97, 139
BspPI GGATC 1 cut(s) 773
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 1 cut(s) 168
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 134, 609
BssMI GATC 1 cut(s) 778
Bst2UI CCWGG 3 cut(s) 135, 510, 610
Bst4CI ACNGT 2 cut(s) 427, 688
Bst6I CTCTTC 3 cut(s) 582, 819, 885
BstAPI GCANNNNNTGC 2 cut(s) 311, 320
BstBAI YACGTR 1 cut(s) 805
BstC8I GCNNGC 2 cut(s) 196, 579
BstDEI CTNAG 2 cut(s) 738, 819
BstF5I GGATG 5 cut(s) 292, 298, 370, 400, 694
BstKTI GATC 1 cut(s) 781
BstMAI GTCTC 1 cut(s) 829
BstMBI GATC 1 cut(s) 778
BstMWI GCNNNNNNNGC 3 cut(s) 191, 311, 320
BstNI CCWGG 3 cut(s) 135, 510, 610
BstNSI RCATGY 1 cut(s) 649
BstSCI CCNGG 3 cut(s) 133, 508, 608
BstV1I GCAGC 5 cut(s) 113, 196, 298, 335, 802
BstV2I GAAGAC 1 cut(s) 481
BstX2I RGATCY 1 cut(s) 778
BstYI RGATCY 1 cut(s) 778
BtrI CACGTC 1 cut(s) 497
BtsCI GGATG 5 cut(s) 292, 298, 370, 400, 694
BtsI GCAGTG 1 cut(s) 759
BtsIMutI CAGTG 4 cut(s) 175, 432, 735, 759
Cac8I GCNNGC 2 cut(s) 196, 579
CaiI CAGNNNCTG 1 cut(s) 311
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 1 cut(s) 138
Csp6I GTAC 3 cut(s) 332, 639, 799
CspAI ACCGGT 1 cut(s) 158
CspCI CAANNNNNGTGG 2 cut(s) 441, 476
CviAII CATG 5 cut(s) 49, 470, 646, 790, 898
CviQI GTAC 3 cut(s) 332, 639, 799
DdeI CTNAG 2 cut(s) 738, 819
DpnI GATC 1 cut(s) 780
DpnII GATC 1 cut(s) 778
Eam1104I CTCTTC 3 cut(s) 582, 819, 885
EarI CTCTTC 3 cut(s) 582, 819, 885
EciI GGCGGA 1 cut(s) 703
Ecl136II GAGCTC 1 cut(s) 757
Eco24I GRGCYC 1 cut(s) 759
Eco47I GGWCC 1 cut(s) 138
Eco53kI GAGCTC 1 cut(s) 757
Eco57I CTGAAG 2 cut(s) 198, 200
EcoICRI GAGCTC 1 cut(s) 757
EcoO109I RGGNCCY 1 cut(s) 138
EcoRII CCWGG 3 cut(s) 133, 508, 608
EcoT38I GRGCYC 1 cut(s) 759
FaeI CATG 5 cut(s) 52, 473, 649, 793, 901
FaiI YATR 9 cut(s) 50, 382, 471, 489, 647, 727, 729, 791, 899
FaqI GGGAC 1 cut(s) 151
FatI CATG 5 cut(s) 48, 469, 645, 789, 897
FblI GTMKAC 1 cut(s) 683
Fnu4HI GCNGC 6 cut(s) 102, 207, 210, 312, 324, 816
FokI GGATG 5 cut(s) 299, 305, 377, 407, 681
FriOI GRGCYC 1 cut(s) 759
Fsp4HI GCNGC 6 cut(s) 102, 207, 210, 312, 324, 816
FspBI CTAG 4 cut(s) 21, 114, 449, 642
GluI GCNGC 6 cut(s) 102, 207, 210, 312, 324, 816
HapII CCGG 2 cut(s) 159, 362
Hin1II CATG 5 cut(s) 52, 473, 649, 793, 901
HinfI GANTC 7 cut(s) 16, 110, 145, 377, 419, 614, 691
HpaII CCGG 2 cut(s) 159, 362
HphI GGTGA 1 cut(s) 764
Hpy166II GTNNAC 2 cut(s) 332, 684
Hpy188I TCNGA 3 cut(s) 62, 553, 699
Hpy188III TCNNGA 2 cut(s) 114, 821
Hpy8I GTNNAC 2 cut(s) 332, 684
HpyAV CCTTC 3 cut(s) 73, 175, 738
HpyCH4III ACNGT 2 cut(s) 427, 688
HpyCH4IV ACGT 2 cut(s) 496, 804
HpyCH4V TGCA 6 cut(s) 194, 314, 323, 401, 764, 776
HpyF10VI GCNNNNNNNGC 3 cut(s) 191, 311, 320
HpyF3I CTNAG 2 cut(s) 738, 819
HpySE526I ACGT 2 cut(s) 496, 804
Hsp92II CATG 5 cut(s) 52, 473, 649, 793, 901
Kzo9I GATC 1 cut(s) 778
Lsp1109I GCAGC 5 cut(s) 113, 196, 298, 335, 802
LweI GCATC 3 cut(s) 181, 298, 355
MaeI CTAG 4 cut(s) 21, 114, 449, 642
MaeII ACGT 2 cut(s) 496, 804
MaeIII GTNAC 1 cut(s) 13
MalI GATC 1 cut(s) 780
MboI GATC 1 cut(s) 778
MboII GAAGA 6 cut(s) 308, 442, 486, 599, 836, 872
MflI RGATCY 1 cut(s) 778
MhlI GDGCHC 1 cut(s) 759
MluCI AATT 2 cut(s) 479, 527
MlyI GAGTC 3 cut(s) 10, 119, 139
MnlI CCTC 7 cut(s) 35, 283, 367, 629, 727, 733, 879
MseI TTAA 2 cut(s) 33, 273
MspA1I CMGCKG 2 cut(s) 209, 326
MspI CCGG 2 cut(s) 159, 362
MspR9I CCNGG 3 cut(s) 135, 510, 610
MvaI CCWGG 3 cut(s) 135, 510, 610
MwoI GCNNNNNNNGC 3 cut(s) 191, 311, 320
NdeII GATC 1 cut(s) 778
NlaIII CATG 5 cut(s) 52, 473, 649, 793, 901
NlaIV GGNNCC 2 cut(s) 97, 139
NmuCI GTSAC 1 cut(s) 13
NspI RCATGY 1 cut(s) 649
PfeI GAWTC 4 cut(s) 377, 419, 614, 691
PfoI TCCNGGA 1 cut(s) 508
PinAI ACCGGT 1 cut(s) 158
PkrI GCNGC 6 cut(s) 103, 208, 211, 313, 325, 817
PleI GAGTC 3 cut(s) 10, 118, 139
PpsI GAGTC 3 cut(s) 10, 118, 139
Ppu21I YACGTR 1 cut(s) 805
PpuMI RGGWCCY 1 cut(s) 138
Psp124BI GAGCTC 1 cut(s) 759
Psp5II RGGWCCY 1 cut(s) 138
Psp6I CCWGG 3 cut(s) 133, 508, 608
PspGI CCWGG 3 cut(s) 133, 508, 608
PspN4I GGNNCC 2 cut(s) 97, 139
PspPI GGNCC 1 cut(s) 138
PspPPI RGGWCCY 1 cut(s) 138
PstNI CAGNNNCTG 1 cut(s) 311
PsuI RGATCY 1 cut(s) 778
PvuII CAGCTG 1 cut(s) 326
RsaI GTAC 3 cut(s) 333, 640, 800
RsaNI GTAC 3 cut(s) 332, 639, 799
SacI GAGCTC 1 cut(s) 759
SaqAI TTAA 2 cut(s) 33, 273
SatI GCNGC 6 cut(s) 102, 207, 210, 312, 324, 816
Sau3AI GATC 1 cut(s) 778
Sau96I GGNCC 1 cut(s) 138
ScaI AGTACT 1 cut(s) 800
SchI GAGTC 3 cut(s) 10, 119, 139
ScrFI CCNGG 3 cut(s) 135, 510, 610
SduI GDGCHC 1 cut(s) 759
SfaNI GCATC 3 cut(s) 181, 298, 355
SinI GGWCC 1 cut(s) 138
Sse9I AATT 2 cut(s) 479, 527
SsiI CCGC 4 cut(s) 99, 207, 284, 714
SspI AATATT 1 cut(s) 563
SspMI CTAG 4 cut(s) 21, 114, 449, 642
SstI GAGCTC 1 cut(s) 759
StyD4I CCNGG 3 cut(s) 133, 508, 608
TaaI ACNGT 2 cut(s) 427, 688
TaiI ACGT 2 cut(s) 499, 807
TaqI TCGA 1 cut(s) 851
TasI AATT 2 cut(s) 479, 527
TatI WGTACW 1 cut(s) 798
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 4 cut(s) 377, 419, 614, 691
Tru1I TTAA 2 cut(s) 33, 273
Tru9I TTAA 2 cut(s) 33, 273
TscAI CASTG 4 cut(s) 175, 432, 742, 766
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 5 cut(s) 101, 209, 311, 323, 815
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 6 cut(s) 33, 37, 309, 315, 873, 879
TspRI CASTG 4 cut(s) 175, 432, 742, 766
VpaK11BI GGWCC 1 cut(s) 138
XapI RAATTY 1 cut(s) 527
XbaI TCTAGA 1 cut(s) 113
XceI RCATGY 1 cut(s) 649
XmiI GTMKAC 1 cut(s) 683
XspI CTAG 4 cut(s) 21, 114, 449, 642
ZrmI AGTACT 1 cut(s) 800
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.