Rh1AG013800

SURP and G-patch domain-containing protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0008437
Physical Location & Seq
Reverse (-)
2176512 .. 2181993
5482 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG013800.1

Sequence Viewer

Length: 1242 bp
ATGGACAAAGGAGTGACTCCTAGCCTCTTTGTTAATGATGGTTCATTCCTGGAAAGGTTCAAACAACTTCAACAAGAGAAGGAAAATGAGAGGGGCGCTTCAGTAGAGGATTCTAAGCTAGGTAAAGCTGTTTCACGGAACCTTACCATTGGTAAAACCAGTACTGAATCGAAGGCTAATGATACACGCAAGACCACGCATGCTGCTTCGGGTGGTAAACTTGCTTTCAGCTTGAAACAGAAGTCAAAGATTGTGGCCCCTCCTGTTAAGTTAGGAGCAGATGAGGATGAAGATGGAGCAGATATTGTAAATGTTTCTGGTGATGCACCAACTAAACGACAAAAGTTGGGTCAGCCAGATGCGGCAGAGGAATCTTCTGGACAAGTGGATGTTGCACCACCTTCCCCAACTGATTCTACAGTGAAGATAGTTGCTGACAAACTAGCAAGTTTTGTGGCTAAACATGGAAGGCAATTTGAGCATATTACACGACAAAAAAATCCAGGAGATAACCCCTTCAAATTTTTATTTGATGAGAGCTGTGCTGATTACAAGTATTATGAATATCGGCTTGCTGATGAGGAGAAAGCCCTCAGACAGACCAGGGAGTTTGAATCATCACGTAATGGAGGTTCAAGCATGTCAGCTTCTAAATCCACAAGTGGTTCCCAAAGGTCTACTTTGAAGCATCCAAGTTATCAAACTCCTGCCTCTGCATTGTATGAAGCCACCGAGGATCCAACATATGGGACTTCATTGGGAAGGACAGGTGAGTCTAGTGGGCCAACAGGTGCAGATCCTATTGCCATGATGGAATTCTATGTGAAAAAGGCAGCACAAGAAGAGAGGAAGAGACAACCTAAACAGTCAAAAGATGAAATGCCCCCACCTGCGTCTCTTCAAGCGCCTTCGCTTAAAAAAGGTCACCACATGGGCGATTACATCCCACAAGAAGAGCTGGAGAGGTTCATGGCTGCTTGTAATGATGCAGCTGCGCAGAAAGCCTCCAAAGAAGCTGCAGATAGGGCCAAAATACAGGCTGATAATGTGGGTCATAAACTCTTGTCTAAAATGGGTTGGAAAGAAGGTAACGTCAAGAAGGACAATTTGGGGGTTGGTGCTCAACAACCTGGAGAGGTGACTCCTGAAGATGATATATACGAGCAGTACAAGAAGCGGATGATGCTTGGTTACCGTTACAGACCTAATCCTCTGAACAATCCGCGTAAAGCATACTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch Surp

Protein Analysis

413

Amino Acids

45.4

Weight (kDa)

8.65

Isoelectric Point (pI)

41.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Surp PF01805 144 - 192 5.3e-13 Surp module
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 898
AasI GACNNNNNNGTC 1 cut(s) 772
Acc16I TGCGCA 1 cut(s) 996
Acc36I ACCTGC 1 cut(s) 898
AccB7I CCANNNNNTGG 1 cut(s) 746
AccI GTMKAC 1 cut(s) 677
AccII CGCG 1 cut(s) 1225
AciI CCGC 3 cut(s) 362, 1177, 1223
AclWI GGATC 3 cut(s) 731, 744, 791
AcsI RAATTY 2 cut(s) 521, 815
AcuI CTGAAG 2 cut(s) 84, 1167
AfaI GTAC 2 cut(s) 163, 1169
AfiI CCNNNNNNNGG 1 cut(s) 746
AgsI TTSAA 8 cut(s) 61, 71, 235, 520, 614, 636, 685, 902
AjnI CCWGG 4 cut(s) 48, 502, 602, 1129
AjuI GAANNNNNNNTTGG 2 cut(s) 1091, 1123
AluBI AGCT 8 cut(s) 118, 128, 231, 540, 647, 958, 992, 1016
AluI AGCT 8 cut(s) 118, 128, 231, 540, 647, 958, 992, 1016
Alw21I GWGCWC 1 cut(s) 1123
Alw26I GTCTC 2 cut(s) 847, 900
AlwI GGATC 3 cut(s) 731, 744, 791
AoxI GGCC 3 cut(s) 255, 782, 1026
ApeKI GCWGC 6 cut(s) 203, 833, 974, 989, 992, 1016
ApoI RAATTY 2 cut(s) 521, 815
ArsI GACNNNNNNTTYG 2 cut(s) 334, 366
AspLEI GCGC 3 cut(s) 98, 907, 997
AspS9I GGNCC 3 cut(s) 256, 782, 1026
AsuHPI GGTGA 4 cut(s) 332, 782, 917, 1150
BamHI GGATCC 1 cut(s) 736
Bbv12I GWGCWC 1 cut(s) 1123
BbvI GCAGC 6 cut(s) 190, 845, 961, 979, 1001, 1003
BccI CCATC 3 cut(s) 32, 287, 805
BciT130I CCWGG 4 cut(s) 50, 504, 604, 1131
BcoDI GTCTC 2 cut(s) 847, 900
BfaI CTAG 4 cut(s) 21, 119, 443, 777
BfmI CTRYAG 2 cut(s) 417, 1017
BfoI RGCGCY 2 cut(s) 99, 908
BfuAI ACCTGC 1 cut(s) 898
BisI GCNGC 7 cut(s) 204, 363, 834, 975, 990, 993, 1017
BlsI GCNGC 7 cut(s) 205, 364, 835, 976, 991, 994, 1018
BmcAI AGTACT 1 cut(s) 163
Bme1390I CCNGG 4 cut(s) 50, 504, 604, 1131
BmgT120I GGNCC 3 cut(s) 256, 782, 1026
BmiI GGNNCC 4 cut(s) 140, 258, 667, 738
BmrFI CCNGG 4 cut(s) 50, 504, 604, 1131
BmsI GCATC 5 cut(s) 313, 349, 697, 976, 1173
BpmI CTGGAG 2 cut(s) 980, 1152
BsaAI YACGTR 1 cut(s) 623
BsaJI CCNNGG 2 cut(s) 603, 732
Bsc4I CCNNNNNNNGG 1 cut(s) 746
Bse1I ACTGG 1 cut(s) 159
BseBI CCWGG 4 cut(s) 50, 504, 604, 1131
BseDI CCNNGG 2 cut(s) 603, 732
BseGI GGATG 5 cut(s) 292, 394, 688, 942, 1185
BseLI CCNNNNNNNGG 1 cut(s) 746
BseMII CTCAG 1 cut(s) 607
BseNI ACTGG 1 cut(s) 159
BseRI GAGGAG 1 cut(s) 596
BseXI GCAGC 6 cut(s) 190, 845, 961, 979, 1001, 1003
BsgI GTGCAG 1 cut(s) 813
Bsh1236I CGCG 1 cut(s) 1225
BshFI GGCC 3 cut(s) 257, 784, 1028
BsiHKAI GWGCWC 1 cut(s) 1123
BslFI GGGAC 1 cut(s) 763
BslI CCNNNNNNNGG 1 cut(s) 746
BsmAI GTCTC 2 cut(s) 847, 900
BsmBI CGTCTC 1 cut(s) 900
BsmFI GGGAC 1 cut(s) 763
BsnI GGCC 3 cut(s) 257, 784, 1028
Bsp1286I GDGCHC 1 cut(s) 1123
Bsp143I GATC 2 cut(s) 736, 796
BspACI CCGC 3 cut(s) 362, 1177, 1223
BspANI GGCC 3 cut(s) 257, 784, 1028
BspCNI CTCAG 1 cut(s) 606
BspFNI CGCG 1 cut(s) 1225
BspLI GGNNCC 4 cut(s) 140, 258, 667, 738
BspMAI CTGCAG 1 cut(s) 1021
BspMI ACCTGC 1 cut(s) 898
BspPI GGATC 3 cut(s) 731, 744, 791
BspQI GCTCTTC 1 cut(s) 948
BsrI ACTGG 1 cut(s) 159
BssECI CCNNGG 2 cut(s) 603, 732
BssMI GATC 2 cut(s) 736, 796
Bst2UI CCWGG 4 cut(s) 50, 504, 604, 1131
Bst4CI ACNGT 3 cut(s) 421, 867, 1196
Bst6I CTCTTC 4 cut(s) 837, 845, 903, 948
BstBAI YACGTR 1 cut(s) 623
BstC8I GCNNGC 2 cut(s) 201, 573
BstDEI CTNAG 2 cut(s) 114, 593
BstEII GGTNACC 2 cut(s) 923, 1190
BstF5I GGATG 5 cut(s) 292, 394, 688, 942, 1185
BstFNI CGCG 1 cut(s) 1225
BstH2I RGCGCY 2 cut(s) 99, 908
BstHHI GCGC 3 cut(s) 98, 907, 997
BstKTI GATC 2 cut(s) 739, 799
BstMAI GTCTC 2 cut(s) 847, 900
BstMBI GATC 2 cut(s) 736, 796
BstMWI GCNNNNNNNGC 4 cut(s) 478, 1001, 1025, 1183
BstNI CCWGG 4 cut(s) 50, 504, 604, 1131
BstNSI RCATGY 2 cut(s) 203, 643
BstPI GGTNACC 2 cut(s) 923, 1190
BstSCI CCNGG 4 cut(s) 48, 502, 602, 1129
BstSFI CTRYAG 2 cut(s) 417, 1017
BstUI CGCG 1 cut(s) 1225
BstV1I GCAGC 6 cut(s) 190, 845, 961, 979, 1001, 1003
BstX2I RGATCY 2 cut(s) 736, 796
BstYI RGATCY 2 cut(s) 736, 796
BsuRI GGCC 3 cut(s) 257, 784, 1028
BtsCI GGATG 5 cut(s) 292, 394, 688, 942, 1185
BtsIMutI CAGTG 1 cut(s) 426
BveI ACCTGC 1 cut(s) 898
Cac8I GCNNGC 2 cut(s) 201, 573
CfoI GCGC 3 cut(s) 98, 907, 997
Cfr13I GGNCC 3 cut(s) 256, 782, 1026
CseI GACGC 1 cut(s) 882
Csp6I GTAC 2 cut(s) 162, 1168
CspCI CAANNNNNGTGG 4 cut(s) 234, 269, 435, 470
CviAII CATG 6 cut(s) 200, 464, 640, 808, 931, 970
CviQI GTAC 2 cut(s) 162, 1168
DdeI CTNAG 2 cut(s) 114, 593
DpnI GATC 2 cut(s) 738, 798
DpnII GATC 2 cut(s) 736, 796
DrdI GACNNNNNNGTC 1 cut(s) 772
DseDI GACNNNNNNGTC 1 cut(s) 772
Eam1104I CTCTTC 4 cut(s) 837, 845, 903, 948
EarI CTCTTC 4 cut(s) 837, 845, 903, 948
Eco57I CTGAAG 2 cut(s) 84, 1167
Eco91I GGTNACC 2 cut(s) 923, 1190
EcoO65I GGTNACC 2 cut(s) 923, 1190
EcoRI GAATTC 1 cut(s) 815
EcoRII CCWGG 4 cut(s) 48, 502, 602, 1129
Esp3I CGTCTC 1 cut(s) 900
FaeI CATG 6 cut(s) 203, 467, 643, 811, 934, 973
FalI AAGNNNNNCTT 2 cut(s) 664, 696
FaqI GGGAC 1 cut(s) 763
FatI CATG 6 cut(s) 199, 463, 639, 807, 930, 969
FauNDI CATATG 1 cut(s) 745
FblI GTMKAC 1 cut(s) 677
Fnu4HI GCNGC 7 cut(s) 204, 363, 834, 975, 990, 993, 1017
FokI GGATG 5 cut(s) 299, 401, 675, 929, 1192
Fsp4HI GCNGC 7 cut(s) 204, 363, 834, 975, 990, 993, 1017
FspBI CTAG 4 cut(s) 21, 119, 443, 777
FspI TGCGCA 1 cut(s) 996
GlaI GCGC 3 cut(s) 97, 906, 996
GluI GCNGC 7 cut(s) 204, 363, 834, 975, 990, 993, 1017
GsuI CTGGAG 2 cut(s) 980, 1152
HaeII RGCGCY 2 cut(s) 99, 908
HaeIII GGCC 3 cut(s) 257, 784, 1028
HgaI GACGC 1 cut(s) 882
HhaI GCGC 3 cut(s) 98, 907, 997
Hin1II CATG 6 cut(s) 203, 467, 643, 811, 934, 973
Hin6I GCGC 3 cut(s) 96, 905, 995
HinP1I GCGC 3 cut(s) 96, 905, 995
HinfI GANTC 8 cut(s) 16, 110, 167, 371, 413, 614, 773, 1141
HphI GGTGA 4 cut(s) 332, 782, 917, 1150
Hpy166II GTNNAC 2 cut(s) 218, 678
Hpy188I TCNGA 2 cut(s) 596, 1215
Hpy188III TCNNGA 3 cut(s) 378, 1096, 1145
Hpy8I GTNNAC 2 cut(s) 218, 678
HpyAV CCTTC 9 cut(s) 73, 166, 411, 462, 526, 756, 918, 1079, 1093
HpyCH4III ACNGT 3 cut(s) 421, 867, 1196
HpyCH4IV ACGT 2 cut(s) 622, 1092
HpyCH4V TGCA 6 cut(s) 326, 395, 716, 794, 989, 1019
HpyF10VI GCNNNNNNNGC 4 cut(s) 478, 1001, 1025, 1183
HpyF3I CTNAG 2 cut(s) 114, 593
HpySE526I ACGT 2 cut(s) 622, 1092
Hsp92II CATG 6 cut(s) 203, 467, 643, 811, 934, 973
HspAI GCGC 3 cut(s) 96, 905, 995
Kzo9I GATC 2 cut(s) 736, 796
LguI GCTCTTC 1 cut(s) 948
LmnI GCTCC 2 cut(s) 275, 296
Lsp1109I GCAGC 6 cut(s) 190, 845, 961, 979, 1001, 1003
LweI GCATC 5 cut(s) 313, 349, 697, 976, 1173
MaeI CTAG 4 cut(s) 21, 119, 443, 777
MaeII ACGT 2 cut(s) 622, 1092
MaeIII GTNAC 6 cut(s) 13, 923, 1088, 1138, 1190, 1196
MalI GATC 2 cut(s) 738, 798
MboI GATC 2 cut(s) 736, 796
MboII GAAGA 8 cut(s) 302, 366, 436, 854, 862, 890, 965, 1160
MflI RGATCY 2 cut(s) 736, 796
MhlI GDGCHC 1 cut(s) 1123
MluCI AATT 4 cut(s) 473, 521, 815, 1105
MlyI GAGTC 3 cut(s) 10, 782, 1135
MmeI TCCRAC 2 cut(s) 764, 1058
MseI TTAA 3 cut(s) 33, 267, 915
MspA1I CMGCKG 1 cut(s) 992
MspR9I CCNGG 4 cut(s) 50, 504, 604, 1131
MvaI CCWGG 4 cut(s) 50, 504, 604, 1131
MvnI CGCG 1 cut(s) 1225
MwoI GCNNNNNNNGC 4 cut(s) 478, 1001, 1025, 1183
NdeI CATATG 1 cut(s) 745
NdeII GATC 2 cut(s) 736, 796
NlaIII CATG 6 cut(s) 203, 467, 643, 811, 934, 973
NlaIV GGNNCC 4 cut(s) 140, 258, 667, 738
NmuCI GTSAC 3 cut(s) 13, 923, 1138
NsbI TGCGCA 1 cut(s) 996
NspI RCATGY 2 cut(s) 203, 643
PaeI GCATGC 1 cut(s) 203
PaqCI CACCTGC 1 cut(s) 898
PciSI GCTCTTC 1 cut(s) 948
PfeI GAWTC 5 cut(s) 110, 167, 371, 413, 614
PflMI CCANNNNNTGG 1 cut(s) 746
PfoI TCCNGGA 2 cut(s) 48, 502
PkrI GCNGC 7 cut(s) 205, 364, 835, 976, 991, 994, 1018
PleI GAGTC 3 cut(s) 10, 781, 1135
PpsI GAGTC 3 cut(s) 10, 781, 1135
Ppu21I YACGTR 1 cut(s) 623
Psp6I CCWGG 4 cut(s) 48, 502, 602, 1129
PspEI GGTNACC 2 cut(s) 923, 1190
PspGI CCWGG 4 cut(s) 48, 502, 602, 1129
PspN4I GGNNCC 4 cut(s) 140, 258, 667, 738
PspPI GGNCC 3 cut(s) 256, 782, 1026
PsrI GAACNNNNNNTAC 2 cut(s) 616, 648
PstI CTGCAG 1 cut(s) 1021
PsuI RGATCY 2 cut(s) 736, 796
PvuII CAGCTG 1 cut(s) 992
RsaI GTAC 2 cut(s) 163, 1169
RsaNI GTAC 2 cut(s) 162, 1168
SapI GCTCTTC 1 cut(s) 948
SaqAI TTAA 3 cut(s) 33, 267, 915
SatI GCNGC 7 cut(s) 204, 363, 834, 975, 990, 993, 1017
Sau3AI GATC 2 cut(s) 736, 796
Sau96I GGNCC 3 cut(s) 256, 782, 1026
ScaI AGTACT 1 cut(s) 163
SchI GAGTC 3 cut(s) 10, 782, 1135
ScrFI CCNGG 4 cut(s) 50, 504, 604, 1131
SduI GDGCHC 1 cut(s) 1123
SfaNI GCATC 5 cut(s) 313, 349, 697, 976, 1173
SfcI CTRYAG 2 cut(s) 417, 1017
SphI GCATGC 1 cut(s) 203
Sse9I AATT 4 cut(s) 473, 521, 815, 1105
SsiI CCGC 3 cut(s) 362, 1177, 1223
SspMI CTAG 4 cut(s) 21, 119, 443, 777
StyD4I CCNGG 4 cut(s) 48, 502, 602, 1129
TaaI ACNGT 3 cut(s) 421, 867, 1196
TaiI ACGT 2 cut(s) 625, 1095
TaqI TCGA 1 cut(s) 170
TasI AATT 4 cut(s) 473, 521, 815, 1105
TatI WGTACW 2 cut(s) 161, 1167
TauI GCSGC 1 cut(s) 365
TfiI GAWTC 5 cut(s) 110, 167, 371, 413, 614
Tru1I TTAA 3 cut(s) 33, 267, 915
Tru9I TTAA 3 cut(s) 33, 267, 915
TscAI CASTG 1 cut(s) 426
TseFI GTSAC 3 cut(s) 13, 923, 1138
TseI GCWGC 6 cut(s) 203, 833, 974, 989, 992, 1016
Tsp45I GTSAC 3 cut(s) 13, 923, 1138
TspDTI ATGAA 7 cut(s) 33, 303, 576, 738, 744, 891, 958
TspGWI ACGGA 1 cut(s) 151
TspRI CASTG 1 cut(s) 426
Van91I CCANNNNNTGG 1 cut(s) 746
XapI RAATTY 2 cut(s) 521, 815
XceI RCATGY 2 cut(s) 203, 643
XmiI GTMKAC 1 cut(s) 677
XspI CTAG 4 cut(s) 21, 119, 443, 777
ZrmI AGTACT 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.