Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0008437

Physical Location & Seq

Genomic Coordinates Forward (+)

24217032 .. 24220920

Gene Structure 3889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g26440.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1275 bp

ATGGACAAAGGAGTGACTCCTAGCCTCTTTGTTAATGATGGTTCATTCATGGAAAGGTTCAGACAACTTCAACAAAAGAAGGATAAAGATAAAGGTTCCGCAGCAGACGAGTCTAGACCAAGTAAAGTTGTTCCAGGGACTTTGACTCCTACCACCACTGGTAAAACCAGTGCTGAACTGAAGGCTAATGATGCACGCAAGGTTGCCGCTGCTTCAGGTAGCAAACTTGCTTTCAGCTTGAAACAGAAGTCAAAGATTGTCGCACCACCTGTTAAGTTAGGTGCTGATGAGGATGAAGATGAAGCAGATGCTGCAGATGTTGCAGCTGGTGCACCAACTAAACGGCAAAAGTTGGGTCAGCCAGATGCCGTAGAGGAATCATACAGACAAGTGGATGTTGCACCACCTTTCCCAACTGATTCAACAGTGAAGATAGTTGCTGACAAACTAGCAAGTTTTGTGGCTAAACATGGAAGGCAATTTGAGCATATTACACGTCAAAAAAATCCAGGAGATACTCCTTTCAAATTTTTATTTGACGAGAGCTGTTCTGATTACAAATATTACGAGTATCAGCTTGCTATTGAAGAGAAAGCACTTCAACAGACCAGGAATTCACAAACATCTCGTAATGGAGGTACTAGCATGTCAACTTCCAAATCCACAAGTAGTTCTCAAAGGTCTACTGTGAATCATCCGAACTACCAAACTCCCGCCTCTGCTTTATATGATGACACTGAGGGAAGGACAGGTGAGCTCACTGCACCAACAGGTGCAGATCCTATTGCCATGATGGAGTACTACGTGAAAAAGGCTGCTCAGGAAGAGAGAAGGAGACAACCTAAACAATCGAAAGATGAAATGCCCCCTCCTGCTTCTCTTCAAGCACCTTCTCTTAAGAAAGGTCATCACATGGGGGATTACATCCCACAAGAAGAGCTGGAGAAGTTTATGGTTGCTTGTAACGATGCAGCTGCACAGAAAGCTGCCAAAGAAGCCGCAGATAGGGCCAAAATCCAGGCTGATAATGTGGGTCATAAACTCTTGTCTAAAATGGGTTGGAAAGAAGGCGAGGGTCTGGGAAGCTCCAGAAGAGGAATTTCGGATCCAATAATGGCGGGTAATGTGAAGAAGGACAATTTGGGGGTTGGTGCTCAACAACCTGGAGAGGTGACTTCTGAAGATGATATATACGAACAATATAAGAAGCGGATGATGCTTGGCTACCGATACAGACCCAATCCTCTGAACAATCCGCGAAAGGCATATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

G-patch Surp

Protein Analysis

425

Amino Acids

46.57

Weight (kDa)

8.89

Isoelectric Point (pI)

43.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008437)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52120 AT3G52120 AT3G52120 AT3G52120
fragaria_vesca	FvH4_7g00680 FvH4_7g00680
malus_domestica	MD02G1315400.v1.1 MD07G1006500.v1.1
prunus_persica	Prupe.2G009600_v2.0.a1 Prupe.2G009600_v2.0.a1 Prupe.2G009600_v2.0.a1
pyrus_communis	pycom02g26440 pycom07g00520
rosa_chinensis	RchiOBHm_Chr1g0314901
rosa_laevigata	RLG00000030756
rosa_multiflora	Rmu_sc0005168.1_g000002
rosa_roxburghii	Rroxscaffold_4G00331690
rosa_rugosa	Rorug01G0002800
rosa_samantha	Rh1AG013800 Rh1BG005400 Rh1CG012100 Rh1DG007200
rosa_wichuraiana	Rw1G000640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	683
AccII	CGCG	1 cut(s)	1258
AciI	CCGC	7 cut(s)	99, 207, 714, 999, 1118, 1210, 1256
AclWI	GGATC	3 cut(s)	773, 1100, 1113
AcsI	RAATTY	3 cut(s)	527, 613, 1098
AcuI	CTGAAG	3 cut(s)	198, 200, 1200
AfaI	GTAC	2 cut(s)	640, 800
AfiI	CCNNNNNNNGG	1 cut(s)	1005
AflII	CTTAAG	1 cut(s)	896
AflIII	ACRYGT	1 cut(s)	494
AgsI	TTSAA	7 cut(s)	71, 241, 423, 526, 587, 602, 884
AjiI	CACGTC	1 cut(s)	497
AjnI	CCWGG	5 cut(s)	133, 508, 608, 1017, 1162
AjuI	GAANNNNNNNTTGG	2 cut(s)	1124, 1156
AluBI	AGCT	9 cut(s)	237, 326, 546, 577, 757, 940, 974, 986, 1086
AluI	AGCT	9 cut(s)	237, 326, 546, 577, 757, 940, 974, 986, 1086
Alw21I	GWGCWC	3 cut(s)	334, 759, 1156
Alw26I	GTCTC	1 cut(s)	829
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	3 cut(s)	773, 1100, 1113
AlwNI	CAGNNNCTG	1 cut(s)	311
AoxI	GGCC	1 cut(s)	1008
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	8 cut(s)	101, 209, 311, 323, 815, 971, 974, 986
ApoI	RAATTY	3 cut(s)	527, 613, 1098
ArsI	GACNNNNNNTTYG	2 cut(s)	340, 372
AspS9I	GGNCC	1 cut(s)	1008
AsuHPI	GGTGA	2 cut(s)	764, 1183
BaeGI	GKGCMC	1 cut(s)	334
BamHI	GGATCC	1 cut(s)	1105
BanII	GRGCYC	1 cut(s)	759
Bbv12I	GWGCWC	3 cut(s)	334, 759, 1156
BbvI	GCAGC	8 cut(s)	113, 196, 298, 335, 802, 961, 973, 983
BccI	CCATC	2 cut(s)	32, 787
BceAI	ACGGC	2 cut(s)	353, 359
BcgI	CGANNNNNNTGC	2 cut(s)	956, 990
BciT130I	CCWGG	5 cut(s)	135, 510, 610, 1019, 1164
BcoDI	GTCTC	1 cut(s)	829
BfaI	CTAG	4 cut(s)	21, 114, 449, 642
BfmI	CTRYAG	1 cut(s)	312
BfrI	CTTAAG	1 cut(s)	896
BmcAI	AGTACT	1 cut(s)	800
Bme1390I	CCNGG	5 cut(s)	135, 510, 610, 1019, 1164
BmgBI	CACGTC	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	1008
BmiI	GGNNCC	2 cut(s)	97, 1107
BmrFI	CCNGG	5 cut(s)	135, 510, 610, 1019, 1164
BmsI	GCATC	5 cut(s)	181, 298, 355, 958, 1206
BpmI	CTGGAG	3 cut(s)	962, 1072, 1185
Bpu10I	CCTNAGC	1 cut(s)	819
BsaAI	YACGTR	1 cut(s)	805
BsaJI	CCNNGG	1 cut(s)	134
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	1005
Bse1I	ACTGG	2 cut(s)	163, 168
BseBI	CCWGG	5 cut(s)	135, 510, 610, 1019, 1164
BseDI	CCNNGG	1 cut(s)	134
BseGI	GGATG	5 cut(s)	298, 400, 694, 924, 1218
BseLI	CCNNNNNNNGG	1 cut(s)	1005
BseMII	CTCAG	2 cut(s)	729, 833
BseNI	ACTGG	2 cut(s)	163, 168
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	8 cut(s)	113, 196, 298, 335, 802, 961, 973, 983
BsgI	GTGCAG	3 cut(s)	747, 795, 960
Bsh1236I	CGCG	1 cut(s)	1258
BshFI	GGCC	1 cut(s)	1010
BsiHKAI	GWGCWC	3 cut(s)	334, 759, 1156
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	1 cut(s)	1005
BsmAI	GTCTC	1 cut(s)	829
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	1010
Bsp1286I	GDGCHC	3 cut(s)	334, 759, 1156
Bsp143I	GATC	2 cut(s)	778, 1105
BspACI	CCGC	7 cut(s)	99, 207, 714, 999, 1118, 1210, 1256
BspANI	GGCC	1 cut(s)	1010
BspCNI	CTCAG	2 cut(s)	730, 832
BspFNI	CGCG	1 cut(s)	1258
BspLI	GGNNCC	2 cut(s)	97, 1107
BspMAI	CTGCAG	1 cut(s)	316
BspPI	GGATC	3 cut(s)	773, 1100, 1113
BspQI	GCTCTTC	1 cut(s)	930
BspTI	CTTAAG	1 cut(s)	896
BsrI	ACTGG	2 cut(s)	163, 168
BssECI	CCNNGG	1 cut(s)	134
BssMI	GATC	2 cut(s)	778, 1105
Bst2UI	CCWGG	5 cut(s)	135, 510, 610, 1019, 1164
Bst4CI	ACNGT	2 cut(s)	427, 688
Bst6I	CTCTTC	5 cut(s)	582, 819, 885, 930, 1087
BstAFI	CTTAAG	1 cut(s)	896
BstAPI	GCANNNNNTGC	3 cut(s)	311, 320, 329
BstBAI	YACGTR	1 cut(s)	805
BstC8I	GCNNGC	2 cut(s)	196, 579
BstDEI	CTNAG	2 cut(s)	738, 819
BstF5I	GGATG	5 cut(s)	298, 400, 694, 924, 1218
BstFNI	CGCG	1 cut(s)	1258
BstKTI	GATC	2 cut(s)	781, 1108
BstMAI	GTCTC	1 cut(s)	829
BstMBI	GATC	2 cut(s)	778, 1105
BstMWI	GCNNNNNNNGC	9 cut(s)	191, 311, 320, 329, 484, 983, 995, 1007, 1216
BstNI	CCWGG	5 cut(s)	135, 510, 610, 1019, 1164
BstNSI	RCATGY	1 cut(s)	649
BstSCI	CCNGG	5 cut(s)	133, 508, 608, 1017, 1162
BstSFI	CTRYAG	1 cut(s)	312
BstSLI	GKGCMC	1 cut(s)	334
BstUI	CGCG	1 cut(s)	1258
BstV1I	GCAGC	8 cut(s)	113, 196, 298, 335, 802, 961, 973, 983
BstX2I	RGATCY	2 cut(s)	778, 1105
BstYI	RGATCY	2 cut(s)	778, 1105
BsuRI	GGCC	1 cut(s)	1010
BtrI	CACGTC	1 cut(s)	497
BtsCI	GGATG	5 cut(s)	298, 400, 694, 924, 1218
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	5 cut(s)	156, 175, 432, 735, 759
Cac8I	GCNNGC	2 cut(s)	196, 579
CaiI	CAGNNNCTG	1 cut(s)	311
Cfr13I	GGNCC	1 cut(s)	1008
Csp6I	GTAC	2 cut(s)	639, 799
CspCI	CAANNNNNGTGG	2 cut(s)	441, 476
CviAII	CATG	5 cut(s)	49, 470, 646, 790, 913
CviQI	GTAC	2 cut(s)	639, 799
DdeI	CTNAG	2 cut(s)	738, 819
DpnI	GATC	2 cut(s)	780, 1107
DpnII	GATC	2 cut(s)	778, 1105
Eam1104I	CTCTTC	5 cut(s)	582, 819, 885, 930, 1087
EarI	CTCTTC	5 cut(s)	582, 819, 885, 930, 1087
Ecl136II	GAGCTC	1 cut(s)	757
Eco24I	GRGCYC	1 cut(s)	759
Eco53kI	GAGCTC	1 cut(s)	757
Eco57I	CTGAAG	3 cut(s)	198, 200, 1200
EcoICRI	GAGCTC	1 cut(s)	757
EcoRI	GAATTC	1 cut(s)	613
EcoRII	CCWGG	5 cut(s)	133, 508, 608, 1017, 1162
EcoT38I	GRGCYC	1 cut(s)	759
FaeI	CATG	5 cut(s)	52, 473, 649, 793, 916
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	5 cut(s)	48, 469, 645, 789, 912
FauI	CCCGC	2 cut(s)	721, 1111
FblI	GTMKAC	1 cut(s)	683
FokI	GGATG	5 cut(s)	305, 407, 681, 911, 1225
FriOI	GRGCYC	1 cut(s)	759
FspBI	CTAG	4 cut(s)	21, 114, 449, 642
GsuI	CTGGAG	3 cut(s)	962, 1072, 1185
HaeIII	GGCC	1 cut(s)	1010
Hin1II	CATG	5 cut(s)	52, 473, 649, 793, 916
HincII	GTYRAC	1 cut(s)	651
HindII	GTYRAC	1 cut(s)	651
HinfI	GANTC	6 cut(s)	16, 110, 145, 377, 419, 691
HphI	GGTGA	2 cut(s)	764, 1183
Hpy166II	GTNNAC	3 cut(s)	332, 651, 684
Hpy188I	TCNGA	6 cut(s)	62, 553, 699, 1105, 1180, 1248
Hpy188III	TCNNGA	3 cut(s)	114, 821, 1089
Hpy8I	GTNNAC	3 cut(s)	332, 651, 684
HpyAV	CCTTC	8 cut(s)	73, 175, 468, 738, 825, 900, 1061, 1126
HpyCH4III	ACNGT	2 cut(s)	427, 688
HpyCH4IV	ACGT	2 cut(s)	496, 804
HpyCH4V	TGCA	9 cut(s)	194, 314, 323, 332, 401, 764, 776, 971, 977
HpyF10VI	GCNNNNNNNGC	9 cut(s)	191, 311, 320, 329, 484, 983, 995, 1007, 1216
HpyF3I	CTNAG	2 cut(s)	738, 819
HpySE526I	ACGT	2 cut(s)	496, 804
Hsp92II	CATG	5 cut(s)	52, 473, 649, 793, 916
Kzo9I	GATC	2 cut(s)	778, 1105
LguI	GCTCTTC	1 cut(s)	930
LmnI	GCTCC	1 cut(s)	1091
Lsp1109I	GCAGC	8 cut(s)	113, 196, 298, 335, 802, 961, 973, 983
LweI	GCATC	5 cut(s)	181, 298, 355, 958, 1206
MaeI	CTAG	4 cut(s)	21, 114, 449, 642
MaeII	ACGT	2 cut(s)	496, 804
MaeIII	GTNAC	3 cut(s)	13, 962, 1171
MalI	GATC	2 cut(s)	780, 1107
MboI	GATC	2 cut(s)	778, 1105
MboII	GAAGA	9 cut(s)	308, 442, 599, 836, 872, 947, 1104, 1141, 1193
MflI	RGATCY	2 cut(s)	778, 1105
MhlI	GDGCHC	3 cut(s)	334, 759, 1156
MluCI	AATT	5 cut(s)	479, 527, 613, 1098, 1138
MlyI	GAGTC	3 cut(s)	10, 119, 139
MmeI	TCCRAC	1 cut(s)	1040
MseI	TTAA	3 cut(s)	33, 273, 897
MspA1I	CMGCKG	3 cut(s)	209, 326, 974
MspCI	CTTAAG	1 cut(s)	896
MspR9I	CCNGG	5 cut(s)	135, 510, 610, 1019, 1164
MvaI	CCWGG	5 cut(s)	135, 510, 610, 1019, 1164
MvnI	CGCG	1 cut(s)	1258
MwoI	GCNNNNNNNGC	9 cut(s)	191, 311, 320, 329, 484, 983, 995, 1007, 1216
NdeII	GATC	2 cut(s)	778, 1105
NlaIII	CATG	5 cut(s)	52, 473, 649, 793, 916
NlaIV	GGNNCC	2 cut(s)	97, 1107
NmuCI	GTSAC	2 cut(s)	13, 1171
NspI	RCATGY	1 cut(s)	649
PciSI	GCTCTTC	1 cut(s)	930
PfeI	GAWTC	3 cut(s)	377, 419, 691
PfoI	TCCNGGA	1 cut(s)	508
PleI	GAGTC	3 cut(s)	10, 118, 139
PpsI	GAGTC	3 cut(s)	10, 118, 139
Ppu21I	YACGTR	1 cut(s)	805
Psp124BI	GAGCTC	1 cut(s)	759
Psp6I	CCWGG	5 cut(s)	133, 508, 608, 1017, 1162
PspGI	CCWGG	5 cut(s)	133, 508, 608, 1017, 1162
PspN4I	GGNNCC	2 cut(s)	97, 1107
PspPI	GGNCC	1 cut(s)	1008
PstI	CTGCAG	1 cut(s)	316
PstNI	CAGNNNCTG	1 cut(s)	311
PsuI	RGATCY	2 cut(s)	778, 1105
PvuII	CAGCTG	2 cut(s)	326, 974
RsaI	GTAC	2 cut(s)	640, 800
RsaNI	GTAC	2 cut(s)	639, 799
SacI	GAGCTC	1 cut(s)	759
SapI	GCTCTTC	1 cut(s)	930
SaqAI	TTAA	3 cut(s)	33, 273, 897
Sau3AI	GATC	2 cut(s)	778, 1105
Sau96I	GGNCC	1 cut(s)	1008
ScaI	AGTACT	1 cut(s)	800
SchI	GAGTC	3 cut(s)	10, 119, 139
ScrFI	CCNGG	5 cut(s)	135, 510, 610, 1019, 1164
SduI	GDGCHC	3 cut(s)	334, 759, 1156
SfaNI	GCATC	5 cut(s)	181, 298, 355, 958, 1206
SfcI	CTRYAG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	896
SmoI	CTYRAG	1 cut(s)	896
Sse9I	AATT	5 cut(s)	479, 527, 613, 1098, 1138
SsiI	CCGC	7 cut(s)	99, 207, 714, 999, 1118, 1210, 1256
SspI	AATATT	1 cut(s)	563
SspMI	CTAG	4 cut(s)	21, 114, 449, 642
SstI	GAGCTC	1 cut(s)	759
StyD4I	CCNGG	5 cut(s)	133, 508, 608, 1017, 1162
TaaI	ACNGT	2 cut(s)	427, 688
TaiI	ACGT	2 cut(s)	499, 807
TaqI	TCGA	1 cut(s)	851
TasI	AATT	5 cut(s)	479, 527, 613, 1098, 1138
TatI	WGTACW	1 cut(s)	798
TauI	GCSGC	2 cut(s)	209, 1001
TfiI	GAWTC	3 cut(s)	377, 419, 691
Tru1I	TTAA	3 cut(s)	33, 273, 897
Tru9I	TTAA	3 cut(s)	33, 273, 897
TscAI	CASTG	5 cut(s)	163, 175, 432, 742, 766
TseFI	GTSAC	2 cut(s)	13, 1171
TseI	GCWGC	8 cut(s)	101, 209, 311, 323, 815, 971, 974, 986
Tsp45I	GTSAC	2 cut(s)	13, 1171
TspDTI	ATGAA	5 cut(s)	33, 37, 309, 315, 873
TspRI	CASTG	5 cut(s)	163, 175, 432, 742, 766
Vha464I	CTTAAG	1 cut(s)	896
VneI	GTGCAC	1 cut(s)	330
XapI	RAATTY	3 cut(s)	527, 613, 1098
XbaI	TCTAGA	1 cut(s)	113
XceI	RCATGY	1 cut(s)	649
XmiI	GTMKAC	1 cut(s)	683
XspI	CTAG	4 cut(s)	21, 114, 449, 642
ZrmI	AGTACT	1 cut(s)	800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.