Prupe.2G009600_v2.0.a1

SURP and G-patch domain-containing protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0008437
Physical Location & Seq
Reverse (-)
896447 .. 902329
5883 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G009600.1

Sequence Viewer

Length: 1281 bp
ATGGACAAAGGAGTGACTCCTAGCCTCTTTGTTAATGATGGTTCATTCATGGAAAGGTTCAAACAACTTCAACAAGAGAAGGAGAAAGATAAGGGTCCTATAGCAGACGAGTCTACACCAAGTAAAGTTGTATCAGGGAGTTCGACTCCTAACCTTACCACTGGTAAAACCAGTGCTGAACTGAAGCCTAATGATACACGCAAGGCCGCAGCTGCTGCTTCAGGTGGCAAACTTGCTTTCAGCTTGAAACAGAAGTCAAAGATTGTGGCACCTCCTGTTAAGTTAGGTGCAGATGAGGATGAAGATGAAGCAGATGCTGCAAATTTTTCAGCCGATGCACCAACAAAACGACAAAAGTTGGGTCAGCCAGATGCCTCAGAGGAATCACCCGGACAAGTGGATGTTGCACCACCTTCCCCAAATGATTCAACAGTGAAGATAGTTGCTGACAAACTAGCAAGTTTTGTGGCTAGACATGGAAGGAAATTTGAGCATATTACACGTCAAAGAAATCCAGGAGATACCCCTTTCAAATTTTTATTTGACGAGAGCTGTGCTGATTACAAATATTATGAGTATCAGCTTGCCATTGAGGAGAAAGTCCTGCAACAGACCATCGATTCTCAAACATCTCGTAATGGAGGTACAAACACGTCCGCTTCCAAATCCACAAGTAGTTCCCAAAGGTCTATTTTGAAGCATCCAAATTATCAAACTCCTGCCTCTGCTTTATATGACGCCACTGAGGGAAGGACAGGTGAGCTCACTGCGCCAACAGGTGCAGATCCTATTGCCATGATGGAGTACTACGTGAAAAAGGCTGCTCAAGAAGAGAGAAAGAGACAACCTAAACAGTCAAAAGATGAAATGCCCCCACCTGCTTCTCTTCAAGCACCTTCTCTTAAAAAAGGTCATCACATGGGTGATTACATCCCACAAGAAGAGCTGGAGAAGTTTATGGCCGCTTGTAATGATGCAGCTTCACAGAAAGCTGCCAAAGAAGCTGCAGATAGGGCAAAAATCCAGGCGGATAATGTGGGTCATAAACTTTTGTCTAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGGAGCTCTAGAAGAGGAATTTCTGATCCAATAATGGCTGGTAATGTGAAGAAAGACAATCTGGGGGTTGGTGCTCAACAACCCGGAGAAGTGACTCCTGAAGATGATATATATGAGCAGTATAAGAAGCGAATGATGCTTGGTTACCGATACAGACCCAATCCTCTGAACAATCCACGGAAGGCATATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-patch Surp

Protein Analysis

427

Amino Acids

46.56

Weight (kDa)

8.46

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 886
Acc36I ACCTGC 1 cut(s) 886
AccB1I GGYRCC 1 cut(s) 268
AccI GTMKAC 1 cut(s) 113
AciI CCGC 4 cut(s) 207, 657, 963, 1028
AclWI GGATC 2 cut(s) 779, 1106
AcoI YGGCCR 1 cut(s) 960
AcsI RAATTY 4 cut(s) 322, 485, 533, 1104
AcuI CTGAAG 3 cut(s) 203, 204, 1206
AcyI GRCGYC 1 cut(s) 738
AfaI GTAC 2 cut(s) 646, 806
AflIII ACRYGT 2 cut(s) 500, 651
AgsI TTSAA 7 cut(s) 61, 71, 247, 429, 532, 697, 890
AjiI CACGTC 2 cut(s) 503, 654
AjnI CCWGG 2 cut(s) 514, 1023
AleI CACNNNNGTG 1 cut(s) 921
Alw21I GWGCWC 3 cut(s) 765, 1094, 1162
Alw26I GTCTC 1 cut(s) 835
AlwI GGATC 2 cut(s) 779, 1106
AlwNI CAGNNNCTG 2 cut(s) 215, 317
AoxI GGCC 2 cut(s) 204, 960
ApeKI GCWGC 8 cut(s) 209, 212, 215, 317, 821, 977, 992, 1004
ApoI RAATTY 4 cut(s) 322, 485, 533, 1104
ArsI GACNNNNNNTTYG 2 cut(s) 346, 378
AspLEI GCGC 1 cut(s) 772
AspS9I GGNCC 1 cut(s) 95
AsuC2I CCSGG 2 cut(s) 390, 1170
AsuHPI GGTGA 4 cut(s) 378, 770, 935, 1088
AvaII GGWCC 1 cut(s) 95
BanI GGYRCC 1 cut(s) 268
BanII GRGCYC 2 cut(s) 765, 1094
BarI GAAGNNNNNNTAC 1 cut(s) 1259
Bbv12I GWGCWC 3 cut(s) 765, 1094, 1162
BbvI GCAGC 8 cut(s) 199, 202, 221, 304, 808, 979, 989, 991
BccI CCATC 3 cut(s) 32, 623, 793
BcgI CGANNNNNNTGC 2 cut(s) 536, 570
BciT130I CCWGG 2 cut(s) 516, 1025
BcnI CCSGG 2 cut(s) 390, 1170
BcoDI GTCTC 1 cut(s) 835
BfaI CTAG 4 cut(s) 21, 455, 471, 1095
BfmI CTRYAG 2 cut(s) 99, 1005
BfuAI ACCTGC 1 cut(s) 886
BmcAI AGTACT 1 cut(s) 806
Bme1390I CCNGG 4 cut(s) 390, 516, 1025, 1170
Bme18I GGWCC 1 cut(s) 95
BmgBI CACGTC 2 cut(s) 503, 654
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 2 cut(s) 96, 270
BmrFI CCNGG 4 cut(s) 390, 516, 1025, 1170
BmsI GCATC 6 cut(s) 304, 325, 361, 709, 964, 1212
BplI GAGNNNNNCTC 2 cut(s) 130, 162
BpmI CTGGAG 1 cut(s) 968
BpuEI CTTGAG 1 cut(s) 810
BpuMI CCSGG 2 cut(s) 390, 1170
Bsa29I ATCGAT 1 cut(s) 618
BsaAI YACGTR 1 cut(s) 811
BsaHI GRCGYC 1 cut(s) 738
BsaJI CCNNGG 1 cut(s) 1262
Bse1I ACTGG 2 cut(s) 166, 171
BseBI CCWGG 2 cut(s) 516, 1025
BseCI ATCGAT 1 cut(s) 618
BseDI CCNNGG 1 cut(s) 1262
BseGI GGATG 4 cut(s) 304, 406, 700, 930
BseMII CTCAG 2 cut(s) 390, 735
BseNI ACTGG 2 cut(s) 166, 171
BseRI GAGGAG 1 cut(s) 608
BseXI GCAGC 8 cut(s) 199, 202, 221, 304, 808, 979, 989, 991
BsgI GTGCAG 2 cut(s) 309, 801
BshFI GGCC 2 cut(s) 206, 962
BshNI GGYRCC 1 cut(s) 268
BshVI ATCGAT 1 cut(s) 618
BsiHKAI GWGCWC 3 cut(s) 765, 1094, 1162
BsiSI CCGG 2 cut(s) 390, 1170
BsmAI GTCTC 1 cut(s) 835
BsnI GGCC 2 cut(s) 206, 962
Bsp1286I GDGCHC 3 cut(s) 765, 1094, 1162
Bsp143I GATC 2 cut(s) 784, 1111
BspACI CCGC 4 cut(s) 207, 657, 963, 1028
BspANI GGCC 2 cut(s) 206, 962
BspCNI CTCAG 2 cut(s) 389, 736
BspDI ATCGAT 1 cut(s) 618
BspLI GGNNCC 2 cut(s) 96, 270
BspMAI CTGCAG 1 cut(s) 1009
BspMI ACCTGC 1 cut(s) 886
BspPI GGATC 2 cut(s) 779, 1106
BspQI GCTCTTC 1 cut(s) 936
BspT107I GGYRCC 1 cut(s) 268
BsrI ACTGG 2 cut(s) 166, 171
BssECI CCNNGG 1 cut(s) 1262
BssMI GATC 2 cut(s) 784, 1111
BssNI GRCGYC 1 cut(s) 738
Bst2UI CCWGG 2 cut(s) 516, 1025
Bst4CI ACNGT 2 cut(s) 433, 855
Bst6I CTCTTC 4 cut(s) 825, 891, 936, 1093
BstACI GRCGYC 1 cut(s) 738
BstAPI GCANNNNNTGC 2 cut(s) 215, 317
BstBAI YACGTR 1 cut(s) 811
BstC8I GCNNGC 1 cut(s) 585
BstDEI CTNAG 2 cut(s) 376, 744
BstDSI CCRYGG 1 cut(s) 1262
BstEII GGTNACC 1 cut(s) 1229
BstF5I GGATG 4 cut(s) 304, 406, 700, 930
BstHHI GCGC 1 cut(s) 772
BstKTI GATC 2 cut(s) 787, 1114
BstMAI GTCTC 1 cut(s) 835
BstMBI GATC 2 cut(s) 784, 1111
BstMWI GCNNNNNNNGC 7 cut(s) 212, 215, 317, 769, 1001, 1013, 1222
BstNI CCWGG 2 cut(s) 516, 1025
BstPI GGTNACC 1 cut(s) 1229
BstSCI CCNGG 4 cut(s) 388, 514, 1023, 1168
BstSFI CTRYAG 2 cut(s) 99, 1005
BstV1I GCAGC 8 cut(s) 199, 202, 221, 304, 808, 979, 989, 991
BstX2I RGATCY 1 cut(s) 784
BstYI RGATCY 1 cut(s) 784
Bsu15I ATCGAT 1 cut(s) 618
BsuRI GGCC 2 cut(s) 206, 962
BsuTUI ATCGAT 1 cut(s) 618
BtgI CCRYGG 1 cut(s) 1262
BtrI CACGTC 2 cut(s) 503, 654
BtsCI GGATG 4 cut(s) 304, 406, 700, 930
BtsI GCAGTG 1 cut(s) 765
BtsIMutI CAGTG 5 cut(s) 159, 178, 438, 741, 765
BveI ACCTGC 1 cut(s) 886
Cac8I GCNNGC 1 cut(s) 585
CaiI CAGNNNCTG 2 cut(s) 215, 317
CfoI GCGC 1 cut(s) 772
Cfr13I GGNCC 1 cut(s) 95
ClaI ATCGAT 1 cut(s) 618
CseI GACGC 1 cut(s) 746
Csp6I GTAC 2 cut(s) 645, 805
CspCI CAANNNNNGTGG 4 cut(s) 246, 281, 447, 482
CviAII CATG 4 cut(s) 49, 476, 796, 919
CviQI GTAC 2 cut(s) 645, 805
DdeI CTNAG 2 cut(s) 376, 744
DpnI GATC 2 cut(s) 786, 1113
DpnII GATC 2 cut(s) 784, 1111
EaeI YGGCCR 1 cut(s) 960
Eam1104I CTCTTC 4 cut(s) 825, 891, 936, 1093
EarI CTCTTC 4 cut(s) 825, 891, 936, 1093
EciI GGCGGA 1 cut(s) 1043
Ecl136II GAGCTC 2 cut(s) 763, 1092
Eco24I GRGCYC 2 cut(s) 765, 1094
Eco47I GGWCC 1 cut(s) 95
Eco53kI GAGCTC 2 cut(s) 763, 1092
Eco57I CTGAAG 3 cut(s) 203, 204, 1206
Eco91I GGTNACC 1 cut(s) 1229
EcoICRI GAGCTC 2 cut(s) 763, 1092
EcoO109I RGGNCCY 1 cut(s) 95
EcoO65I GGTNACC 1 cut(s) 1229
EcoRII CCWGG 2 cut(s) 514, 1023
EcoT38I GRGCYC 2 cut(s) 765, 1094
FaeI CATG 4 cut(s) 52, 479, 799, 922
FatI CATG 4 cut(s) 48, 475, 795, 918
FblI GTMKAC 1 cut(s) 113
FokI GGATG 4 cut(s) 311, 413, 687, 917
FriOI GRGCYC 2 cut(s) 765, 1094
FspBI CTAG 4 cut(s) 21, 455, 471, 1095
GlaI GCGC 1 cut(s) 771
GsuI CTGGAG 1 cut(s) 968
HaeIII GGCC 2 cut(s) 206, 962
HapII CCGG 2 cut(s) 390, 1170
HgaI GACGC 1 cut(s) 746
HhaI GCGC 1 cut(s) 772
Hin1I GRCGYC 1 cut(s) 738
Hin1II CATG 4 cut(s) 52, 479, 799, 922
Hin6I GCGC 1 cut(s) 770
HinP1I GCGC 1 cut(s) 770
HinfI GANTC 7 cut(s) 16, 110, 145, 383, 425, 620, 1180
HpaII CCGG 2 cut(s) 390, 1170
HphI GGTGA 4 cut(s) 378, 770, 935, 1088
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 3 cut(s) 379, 1111, 1254
Hpy188III TCNNGA 3 cut(s) 827, 1095, 1184
Hpy8I GTNNAC 1 cut(s) 114
HpyAV CCTTC 7 cut(s) 73, 423, 474, 744, 906, 1067, 1261
HpyCH4III ACNGT 2 cut(s) 433, 855
HpyCH4IV ACGT 3 cut(s) 502, 653, 810
HpyCH4V TGCA 8 cut(s) 290, 320, 338, 407, 607, 782, 977, 1007
HpyF10VI GCNNNNNNNGC 7 cut(s) 212, 215, 317, 769, 1001, 1013, 1222
HpyF3I CTNAG 2 cut(s) 376, 744
HpySE526I ACGT 3 cut(s) 502, 653, 810
Hsp92I GRCGYC 1 cut(s) 738
Hsp92II CATG 4 cut(s) 52, 479, 799, 922
HspAI GCGC 1 cut(s) 770
Kzo9I GATC 2 cut(s) 784, 1111
LguI GCTCTTC 1 cut(s) 936
LmnI GCTCC 1 cut(s) 1089
Lsp1109I GCAGC 8 cut(s) 199, 202, 221, 304, 808, 979, 989, 991
LweI GCATC 6 cut(s) 304, 325, 361, 709, 964, 1212
MaeI CTAG 4 cut(s) 21, 455, 471, 1095
MaeII ACGT 3 cut(s) 502, 653, 810
MaeIII GTNAC 3 cut(s) 13, 1177, 1229
MalI GATC 2 cut(s) 786, 1113
MboI GATC 2 cut(s) 784, 1111
MboII GAAGA 8 cut(s) 314, 448, 842, 878, 953, 1110, 1147, 1199
MflI RGATCY 1 cut(s) 784
MhlI GDGCHC 3 cut(s) 765, 1094, 1162
MluCI AATT 5 cut(s) 322, 485, 533, 706, 1104
MlyI GAGTC 4 cut(s) 10, 119, 139, 1174
MmeI TCCRAC 1 cut(s) 1046
MseI TTAA 3 cut(s) 33, 279, 903
MslI CAYNNNNRTG 1 cut(s) 921
MspA1I CMGCKG 1 cut(s) 212
MspI CCGG 2 cut(s) 390, 1170
MspR9I CCNGG 4 cut(s) 390, 516, 1025, 1170
MvaI CCWGG 2 cut(s) 516, 1025
MwoI GCNNNNNNNGC 7 cut(s) 212, 215, 317, 769, 1001, 1013, 1222
NciI CCSGG 2 cut(s) 390, 1170
NdeII GATC 2 cut(s) 784, 1111
NlaIII CATG 4 cut(s) 52, 479, 799, 922
NlaIV GGNNCC 2 cut(s) 96, 270
NmuCI GTSAC 2 cut(s) 13, 1177
OliI CACNNNNGTG 1 cut(s) 921
PaqCI CACCTGC 1 cut(s) 886
PciSI GCTCTTC 1 cut(s) 936
PfeI GAWTC 3 cut(s) 383, 425, 620
PfoI TCCNGGA 1 cut(s) 514
PleI GAGTC 4 cut(s) 10, 118, 139, 1174
PpsI GAGTC 4 cut(s) 10, 118, 139, 1174
Ppu21I YACGTR 1 cut(s) 811
PpuMI RGGWCCY 1 cut(s) 95
Psp124BI GAGCTC 2 cut(s) 765, 1094
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 2 cut(s) 514, 1023
PspEI GGTNACC 1 cut(s) 1229
PspGI CCWGG 2 cut(s) 514, 1023
PspN4I GGNNCC 2 cut(s) 96, 270
PspPI GGNCC 1 cut(s) 95
PspPPI RGGWCCY 1 cut(s) 95
PstI CTGCAG 1 cut(s) 1009
PstNI CAGNNNCTG 2 cut(s) 215, 317
PsuI RGATCY 1 cut(s) 784
PvuII CAGCTG 1 cut(s) 212
RsaI GTAC 2 cut(s) 646, 806
RsaNI GTAC 2 cut(s) 645, 805
RseI CAYNNNNRTG 1 cut(s) 921
SacI GAGCTC 2 cut(s) 765, 1094
SapI GCTCTTC 1 cut(s) 936
SaqAI TTAA 3 cut(s) 33, 279, 903
Sau3AI GATC 2 cut(s) 784, 1111
Sau96I GGNCC 1 cut(s) 95
ScaI AGTACT 1 cut(s) 806
SchI GAGTC 4 cut(s) 10, 119, 139, 1174
ScrFI CCNGG 4 cut(s) 390, 516, 1025, 1170
SduI GDGCHC 3 cut(s) 765, 1094, 1162
SfaNI GCATC 6 cut(s) 304, 325, 361, 709, 964, 1212
SfcI CTRYAG 2 cut(s) 99, 1005
SinI GGWCC 1 cut(s) 95
SmiMI CAYNNNNRTG 1 cut(s) 921
SmlI CTYRAG 1 cut(s) 825
SmoI CTYRAG 1 cut(s) 825
Sse9I AATT 5 cut(s) 322, 485, 533, 706, 1104
SsiI CCGC 4 cut(s) 207, 657, 963, 1028
SspI AATATT 1 cut(s) 569
SspMI CTAG 4 cut(s) 21, 455, 471, 1095
SstI GAGCTC 2 cut(s) 765, 1094
StyD4I CCNGG 4 cut(s) 388, 514, 1023, 1168
TaaI ACNGT 2 cut(s) 433, 855
TaiI ACGT 3 cut(s) 505, 656, 813
TaqI TCGA 2 cut(s) 143, 618
TasI AATT 5 cut(s) 322, 485, 533, 706, 1104
TatI WGTACW 1 cut(s) 804
TauI GCSGC 2 cut(s) 209, 965
TfiI GAWTC 3 cut(s) 383, 425, 620
Tru1I TTAA 3 cut(s) 33, 279, 903
Tru9I TTAA 3 cut(s) 33, 279, 903
TscAI CASTG 5 cut(s) 166, 178, 438, 748, 772
TseFI GTSAC 2 cut(s) 13, 1177
TseI GCWGC 8 cut(s) 209, 212, 215, 317, 821, 977, 992, 1004
Tsp45I GTSAC 2 cut(s) 13, 1177
TspDTI ATGAA 5 cut(s) 33, 37, 315, 321, 879
TspGWI ACGGA 1 cut(s) 1279
TspRI CASTG 5 cut(s) 166, 178, 438, 748, 772
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 4 cut(s) 322, 485, 533, 1104
XbaI TCTAGA 1 cut(s) 1094
XmiI GTMKAC 1 cut(s) 113
XspI CTAG 4 cut(s) 21, 455, 471, 1095
ZrmI AGTACT 1 cut(s) 806
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.