AT3G52155

Phosphoglycerate mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0010498
Physical Location & Seq
Forward (+)
19343537 .. 19345517
1981 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G52155.1

Sequence Viewer

Length: 657 bp
ATGCTTAGCTTGCAGTGTCTTCCTCCTTTCTTCATCTCCGTCCCAAATCGGAGCACCAATTCTTGCTCCACGGCTCCACTTCGTGCGGTCAGTGACTTCGCTGCTTCTCCGTCGACCTCAATCTCTCGCCGTCTTATCCTTCTCCGTCACGCTCACAGTTCCTGGGATGATCTTTCCCTCAGAGACCATGATCGTCCTCTAAGTAAAACCGGAGAAGCAGATGCTGCCAAAGTAGCTCAAATCCTCTCCTCACTCGGTTGGCTTCCCCAACTTATTCTCTCAAGCGACGCCACTCGGACTAGAGAGACACTGAAGTCGATGCAGGCTCAAGTAGATGGGTTTATGGAGGCAAATGTACATTTCATTCCTAGCTTTTACTCCATTGCTGCTATGGATGGCCAAACAGCCGAGCATCTTCAAAACATTATCTCCAAATATTCAACCCCTGATATCTCCACTATCATGTGTATGGGGCATAATAAGGGTTGGGAAGAAGCAGCTTCCATGCTCTCTGGAGCTTCTATTAAGTTGAAAACATGCAATGCTGCTTTGCTTCAGGCTTTTGGCAACTCCTGGGAAGAAGCTTTTGCGCTGTCCGGGCCTGGTGGATGGAAACTTGAGGGTCTAGTGGCTCCAGATAGTAGCATCTTTGTGTAA

Protein Analysis

218

Amino Acids

23.59

Weight (kDa)

6.05

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 45 - 112 2.1e-08 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52155 AT3G52155 AT3G52155 AT3G52155
fragaria_vesca FvH4_3g00011
malus_domestica MD10G1342400.v1.1
prunus_persica Prupe.4G000400_v2.0.a1
pyrus_communis pycom10g29170
rosa_chinensis RchiOBHm_Chr5g0000011
rosa_laevigata RLG00000030832
rosa_multiflora Rmu_sc0007644.1_g000011
rosa_roxburghii Rroxscaffold_1G00076050
rosa_rugosa Rorug04G0380000 Rorug04G0380100 Rorug04G0380200 Rorug04G0380300
rosa_samantha Rh5AG000200 Rh5BG001400 Rh5CG000200 Rh5DG000200
rosa_wichuraiana Rw5G000050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 113
AciI CCGC 1 cut(s) 86
AcoI YGGCCR 1 cut(s) 397
AcuI CTGAAG 2 cut(s) 332, 539
AcyI GRCGYC 1 cut(s) 288
AdeI CACNNNGTG 1 cut(s) 83
AfaI GTAC 1 cut(s) 357
AgsI TTSAA 3 cut(s) 419, 441, 532
AjnI CCWGG 3 cut(s) 161, 572, 601
AluBI AGCT 6 cut(s) 9, 236, 372, 500, 518, 584
AluI AGCT 6 cut(s) 9, 236, 372, 500, 518, 584
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 2 cut(s) 177, 299
AlwNI CAGNNNCTG 2 cut(s) 162, 224
AoxI GGCC 2 cut(s) 397, 599
ApeKI GCWGC 5 cut(s) 101, 224, 386, 497, 545
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 1 cut(s) 599
AsuC2I CCSGG 1 cut(s) 598
BalI TGGCCA 1 cut(s) 399
BbsI GAAGAC 1 cut(s) 11
Bbv12I GWGCWC 1 cut(s) 56
BbvI GCAGC 5 cut(s) 88, 211, 373, 509, 532
BccI CCATC 3 cut(s) 329, 389, 603
BceAI ACGGC 2 cut(s) 87, 114
BciT130I CCWGG 3 cut(s) 163, 574, 603
BcnI CCSGG 1 cut(s) 598
BcoDI GTCTC 2 cut(s) 177, 299
BfaI CTAG 3 cut(s) 300, 369, 626
BisI GCNGC 5 cut(s) 102, 225, 387, 498, 546
BlpI GCTNAGC 1 cut(s) 5
BlsI GCNGC 5 cut(s) 103, 226, 388, 499, 547
Bme1390I CCNGG 4 cut(s) 163, 574, 598, 603
BmgT120I GGNCC 1 cut(s) 599
BmiI GGNNCC 2 cut(s) 75, 633
BmrFI CCNGG 4 cut(s) 163, 574, 598, 603
BmsI GCATC 3 cut(s) 211, 309, 421
BpiI GAAGAC 1 cut(s) 11
BpmI CTGGAG 2 cut(s) 534, 618
Bpu1102I GCTNAGC 1 cut(s) 5
BpuEI CTTGAG 3 cut(s) 265, 312, 638
BpuMI CCSGG 1 cut(s) 598
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 1 cut(s) 177
BsaJI CCNNGG 3 cut(s) 69, 162, 573
BsaWI WCCGGW 1 cut(s) 209
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
Bse3DI GCAATG 2 cut(s) 381, 547
BseBI CCWGG 3 cut(s) 163, 574, 603
BseDI CCNNGG 3 cut(s) 69, 162, 573
BseGI GGATG 3 cut(s) 172, 400, 614
BseMI GCAATG 2 cut(s) 381, 547
BseMII CTCAG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 238
BseXI GCAGC 5 cut(s) 88, 211, 373, 509, 532
BshFI GGCC 2 cut(s) 399, 601
BsiHKAI GWGCWC 1 cut(s) 56
BsiSI CCGG 2 cut(s) 210, 597
BslFI GGGAC 1 cut(s) 26
BsmAI GTCTC 2 cut(s) 177, 299
BsmFI GGGAC 1 cut(s) 26
BsnI GGCC 2 cut(s) 399, 601
Bso31I GGTCTC 1 cut(s) 177
Bsp1286I GDGCHC 1 cut(s) 56
Bsp1407I TGTACA 1 cut(s) 355
Bsp143I GATC 2 cut(s) 169, 190
Bsp1720I GCTNAGC 1 cut(s) 5
BspACI CCGC 1 cut(s) 86
BspANI GGCC 2 cut(s) 399, 601
BspCNI CTCAG 1 cut(s) 192
BspLI GGNNCC 2 cut(s) 75, 633
BspTNI GGTCTC 1 cut(s) 177
BsrDI GCAATG 2 cut(s) 381, 547
BsrGI TGTACA 1 cut(s) 355
BssECI CCNNGG 3 cut(s) 69, 162, 573
BssMI GATC 2 cut(s) 169, 190
BssNI GRCGYC 1 cut(s) 288
Bst2UI CCWGG 3 cut(s) 163, 574, 603
Bst4CI ACNGT 1 cut(s) 158
BstACI GRCGYC 1 cut(s) 288
BstAPI GCANNNNNTGC 1 cut(s) 224
BstAUI TGTACA 1 cut(s) 355
BstC8I GCNNGC 2 cut(s) 11, 324
BstDEI CTNAG 3 cut(s) 5, 179, 200
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 3 cut(s) 172, 400, 614
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 2 cut(s) 172, 193
BstMAI GTCTC 2 cut(s) 177, 299
BstMBI GATC 2 cut(s) 169, 190
BstMWI GCNNNNNNNGC 4 cut(s) 10, 224, 233, 598
BstNI CCWGG 3 cut(s) 163, 574, 603
BstNSI RCATGY 1 cut(s) 540
BstSCI CCNGG 4 cut(s) 161, 572, 596, 601
BstV1I GCAGC 5 cut(s) 88, 211, 373, 509, 532
BstV2I GAAGAC 1 cut(s) 11
BsuRI GGCC 2 cut(s) 399, 601
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 3 cut(s) 172, 400, 614
BtsI GCAGTG 1 cut(s) 20
BtsIMutI CAGTG 3 cut(s) 20, 97, 308
Cac8I GCNNGC 2 cut(s) 11, 324
CaiI CAGNNNCTG 2 cut(s) 162, 224
CfoI GCGC 1 cut(s) 592
Cfr13I GGNCC 1 cut(s) 599
CseI GACGC 1 cut(s) 296
Csp6I GTAC 1 cut(s) 356
CviAII CATG 4 cut(s) 188, 463, 505, 537
CviQI GTAC 1 cut(s) 356
DdeI CTNAG 3 cut(s) 5, 179, 200
DpnI GATC 2 cut(s) 171, 192
DpnII GATC 2 cut(s) 169, 190
DraIII CACNNNGTG 1 cut(s) 83
DrdI GACNNNNNNGTC 1 cut(s) 313
DseDI GACNNNNNNGTC 1 cut(s) 313
EaeI YGGCCR 1 cut(s) 397
Eco31I GGTCTC 1 cut(s) 177
Eco32I GATATC 1 cut(s) 451
Eco57I CTGAAG 2 cut(s) 332, 539
EcoRII CCWGG 3 cut(s) 161, 572, 601
EcoRV GATATC 1 cut(s) 451
FaeI CATG 4 cut(s) 191, 466, 508, 540
FaiI YATR 8 cut(s) 189, 344, 392, 464, 470, 477, 506, 538
FaqI GGGAC 1 cut(s) 26
FatI CATG 4 cut(s) 187, 462, 504, 536
FblI GTMKAC 1 cut(s) 113
Fnu4HI GCNGC 5 cut(s) 102, 225, 387, 498, 546
FokI GGATG 3 cut(s) 179, 407, 621
Fsp4HI GCNGC 5 cut(s) 102, 225, 387, 498, 546
FspBI CTAG 3 cut(s) 300, 369, 626
GlaI GCGC 1 cut(s) 591
GluI GCNGC 5 cut(s) 102, 225, 387, 498, 546
GsuI CTGGAG 2 cut(s) 534, 618
HaeIII GGCC 2 cut(s) 399, 601
HapII CCGG 2 cut(s) 210, 597
HgaI GACGC 1 cut(s) 296
HhaI GCGC 1 cut(s) 592
Hin1I GRCGYC 1 cut(s) 288
Hin1II CATG 4 cut(s) 191, 466, 508, 540
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HincII GTYRAC 1 cut(s) 114
HindII GTYRAC 1 cut(s) 114
HindIII AAGCTT 1 cut(s) 582
HpaII CCGG 2 cut(s) 210, 597
Hpy166II GTNNAC 1 cut(s) 114
Hpy188I TCNGA 3 cut(s) 51, 182, 297
Hpy188III TCNNGA 2 cut(s) 513, 635
Hpy8I GTNNAC 1 cut(s) 114
Hpy99I CGWCG 2 cut(s) 115, 290
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 1 cut(s) 158
HpyCH4V TGCA 3 cut(s) 13, 322, 540
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 224, 233, 598
HpyF3I CTNAG 3 cut(s) 5, 179, 200
Hsp92I GRCGYC 1 cut(s) 288
Hsp92II CATG 4 cut(s) 191, 466, 508, 540
HspAI GCGC 1 cut(s) 590
Kzo9I GATC 2 cut(s) 169, 190
LmnI GCTCC 5 cut(s) 51, 71, 79, 515, 637
Lsp1109I GCAGC 5 cut(s) 88, 211, 373, 509, 532
LweI GCATC 3 cut(s) 211, 309, 421
MaeI CTAG 3 cut(s) 300, 369, 626
MaeIII GTNAC 2 cut(s) 92, 146
MalI GATC 2 cut(s) 171, 192
MboI GATC 2 cut(s) 169, 190
MboII GAAGA 5 cut(s) 11, 22, 407, 503, 590
MhlI GDGCHC 1 cut(s) 56
MlsI TGGCCA 1 cut(s) 399
MluCI AATT 1 cut(s) 58
MluNI TGGCCA 1 cut(s) 399
MnlI CCTC 8 cut(s) 33, 127, 188, 207, 254, 259, 340, 613
Mox20I TGGCCA 1 cut(s) 399
MscI TGGCCA 1 cut(s) 399
MseI TTAA 1 cut(s) 525
MslI CAYNNNNRTG 3 cut(s) 461, 467, 650
Msp20I TGGCCA 1 cut(s) 399
MspI CCGG 2 cut(s) 210, 597
MspR9I CCNGG 4 cut(s) 163, 574, 598, 603
MvaI CCWGG 3 cut(s) 163, 574, 603
MwoI GCNNNNNNNGC 4 cut(s) 10, 224, 233, 598
NciI CCSGG 1 cut(s) 598
NdeII GATC 2 cut(s) 169, 190
NlaIII CATG 4 cut(s) 191, 466, 508, 540
NlaIV GGNNCC 2 cut(s) 75, 633
NmeAIII GCCGAG 1 cut(s) 433
NmuCI GTSAC 2 cut(s) 92, 146
NspI RCATGY 1 cut(s) 540
PkrI GCNGC 5 cut(s) 103, 226, 388, 499, 547
Psp6I CCWGG 3 cut(s) 161, 572, 601
PspGI CCWGG 3 cut(s) 161, 572, 601
PspN4I GGNNCC 2 cut(s) 75, 633
PspPI GGNCC 1 cut(s) 599
PstNI CAGNNNCTG 2 cut(s) 162, 224
RsaI GTAC 1 cut(s) 357
RsaNI GTAC 1 cut(s) 356
RseI CAYNNNNRTG 3 cut(s) 461, 467, 650
SalI GTCGAC 1 cut(s) 112
SaqAI TTAA 1 cut(s) 525
SatI GCNGC 5 cut(s) 102, 225, 387, 498, 546
Sau3AI GATC 2 cut(s) 169, 190
Sau96I GGNCC 1 cut(s) 599
ScrFI CCNGG 4 cut(s) 163, 574, 598, 603
SduI GDGCHC 1 cut(s) 56
SetI ASST 7 cut(s) 11, 119, 238, 374, 502, 520, 586
SfaNI GCATC 3 cut(s) 211, 309, 421
SmiMI CAYNNNNRTG 3 cut(s) 461, 467, 650
SmlI CTYRAG 3 cut(s) 280, 327, 617
SmoI CTYRAG 3 cut(s) 280, 327, 617
Sse9I AATT 1 cut(s) 58
SsiI CCGC 1 cut(s) 86
SspI AATATT 1 cut(s) 437
SspMI CTAG 3 cut(s) 300, 369, 626
StyD4I CCNGG 4 cut(s) 161, 572, 596, 601
TaaI ACNGT 1 cut(s) 158
TaqI TCGA 2 cut(s) 113, 317
TasI AATT 1 cut(s) 58
TatI WGTACW 1 cut(s) 355
Tru1I TTAA 1 cut(s) 525
Tru9I TTAA 1 cut(s) 525
TscAI CASTG 3 cut(s) 20, 97, 315
TseFI GTSAC 2 cut(s) 92, 146
TseI GCWGC 5 cut(s) 101, 224, 386, 497, 545
Tsp45I GTSAC 2 cut(s) 92, 146
TspDTI ATGAA 2 cut(s) 22, 352
TspGWI ACGGA 3 cut(s) 28, 99, 134
TspRI CASTG 3 cut(s) 20, 97, 315
XceI RCATGY 1 cut(s) 540
XcmI CCANNNNNNNNNTGG 1 cut(s) 388
XmiI GTMKAC 1 cut(s) 113
XspI CTAG 3 cut(s) 300, 369, 626
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.