RLG00000030832

Phosphoglycerate mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0010498
Physical Location & Seq
Reverse (-)
70288 .. 73003
2716 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030832

Sequence Viewer

Length: 726 bp
ATGAATGCACTTACCCTCTGTAACCATAACCATAATATTTGTATCAATAGCCACCATCATTTCTCAGCGTCGGCGAAGCGCAATTGGCCTAAATTGTTTTCAATTCATCCCAGAAACCTTCGTACAAGTACTAGGCCTTCGTCTCTGGTAATCGAGACGGTGGAAGGCCAAGTTGTCGCTGATTCTGAGCAAACTCCTTCATCTGTTGCTCGTCGTCTCATTCTGCTTCGTCATGCCAAGAGTTCCTGGGAAGACCCCTCGCTGAAAGATCATGATCGACCCCTAAGTGCAAAAGGACAAGCCGATGCTGTTGAAATCTCTCACAAGCTTCAACAGTTGGGCTGGATTCCTCAGCTTATTTTATCCAGCAATGCAGTGCGAACCAGGGAGACTCTTACCATAATGCAGAAACAAGTGAGGGGCTTCTTGGAAGCTGAGGTCCATTACTTTTCCAGCTTTTATTCCATTGCGGCCATGGATGGGCAGACTGCTGAGCACCTTCAACATATTATCTGTAACTATTCAAGGGATGACATACTCACCGTCATGTGTATGGGACATAATAGGGGTTGGGAGGAGGCAGCATCAATGTTGACAGGTGCCTCCATAGAACTGAAGACTTGCAACGCTGCTTTGCTTGAAGCTACCGGGAAATCTTGGGATGAGGCATTTGCTCTGGCAGGACTAGGGGGGTGGAAACTACAGGGCATTGTGAAACCAAGTTAG

Protein Analysis

242

Amino Acids

26.8

Weight (kDa)

7.77

Isoelectric Point (pI)

50.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
His_Phos_1 PF00300 73 - 140 1.1e-06 Histidine phosphatase superfamily (branch 1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52155 AT3G52155 AT3G52155 AT3G52155
fragaria_vesca FvH4_3g00011
malus_domestica MD10G1342400.v1.1
prunus_persica Prupe.4G000400_v2.0.a1
pyrus_communis pycom10g29170
rosa_chinensis RchiOBHm_Chr5g0000011
rosa_laevigata RLG00000030832
rosa_multiflora Rmu_sc0007644.1_g000011
rosa_roxburghii Rroxscaffold_1G00076050
rosa_rugosa Rorug04G0380000 Rorug04G0380100 Rorug04G0380200 Rorug04G0380300
rosa_samantha Rh5AG000200 Rh5BG001400 Rh5CG000200 Rh5DG000200
rosa_wichuraiana Rw5G000050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 599
AciI CCGC 1 cut(s) 470
AcoI YGGCCR 1 cut(s) 471
AcuI CTGAAG 1 cut(s) 635
AfaI GTAC 2 cut(s) 124, 130
AfiI CCNNNNNNNGG 1 cut(s) 480
AgsI TTSAA 6 cut(s) 102, 314, 332, 503, 525, 641
AjnI CCWGG 2 cut(s) 245, 383
AluBI AGCT 5 cut(s) 328, 355, 434, 456, 644
AluI AGCT 5 cut(s) 328, 355, 434, 456, 644
Alw21I GWGCWC 1 cut(s) 498
Alw26I GTCTC 4 cut(s) 147, 149, 221, 383
AoxI GGCC 4 cut(s) 86, 134, 166, 471
ApeKI GCWGC 2 cut(s) 581, 629
AspLEI GCGC 1 cut(s) 81
AspS9I GGNCC 1 cut(s) 439
AsuC2I CCSGG 1 cut(s) 649
AsuHPI GGTGA 1 cut(s) 532
AvaII GGWCC 1 cut(s) 439
BanI GGYRCC 1 cut(s) 599
BarI GAAGNNNNNNTAC 2 cut(s) 121, 153
BbsI GAAGAC 2 cut(s) 258, 623
Bbv12I GWGCWC 1 cut(s) 498
BbvCI CCTCAGC 2 cut(s) 351, 435
BbvI GCAGC 2 cut(s) 593, 616
BccI CCATC 2 cut(s) 63, 473
BciT130I CCWGG 2 cut(s) 247, 385
BcnI CCSGG 1 cut(s) 649
BcoDI GTCTC 4 cut(s) 147, 149, 221, 383
BfaI CTAG 2 cut(s) 132, 686
BfmI CTRYAG 1 cut(s) 701
BisI GCNGC 3 cut(s) 471, 582, 630
BlpI GCTNAGC 1 cut(s) 492
BlsI GCNGC 3 cut(s) 472, 583, 631
BmcAI AGTACT 1 cut(s) 130
Bme1390I CCNGG 3 cut(s) 247, 385, 649
Bme18I GGWCC 1 cut(s) 439
BmgT120I GGNCC 1 cut(s) 439
BmiI GGNNCC 1 cut(s) 601
BmrFI CCNGG 3 cut(s) 247, 385, 649
BmsI GCATC 2 cut(s) 295, 593
BpiI GAAGAC 2 cut(s) 258, 623
Bpu10I CCTNAGC 2 cut(s) 351, 435
Bpu1102I GCTNAGC 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 649
BsaBI GATNNNNATC 1 cut(s) 273
BsaJI CCNNGG 3 cut(s) 246, 384, 474
Bsc4I CCNNNNNNNGG 1 cut(s) 480
Bse3DI GCAATG 2 cut(s) 376, 465
Bse8I GATNNNNATC 1 cut(s) 273
BseBI CCWGG 2 cut(s) 247, 385
BseDI CCNNGG 3 cut(s) 246, 384, 474
BseGI GGATG 4 cut(s) 106, 484, 535, 667
BseJI GATNNNNATC 1 cut(s) 273
BseLI CCNNNNNNNGG 1 cut(s) 480
BseMI GCAATG 2 cut(s) 376, 465
BseMII CTCAG 5 cut(s) 78, 177, 365, 426, 483
BseRI GAGGAG 1 cut(s) 590
BseXI GCAGC 2 cut(s) 593, 616
BshFI GGCC 4 cut(s) 88, 136, 168, 473
BshNI GGYRCC 1 cut(s) 599
BsiHKAI GWGCWC 1 cut(s) 498
BsiSI CCGG 1 cut(s) 648
BslFI GGGAC 1 cut(s) 570
BslI CCNNNNNNNGG 1 cut(s) 480
BsmAI GTCTC 4 cut(s) 147, 149, 221, 383
BsmBI CGTCTC 3 cut(s) 147, 149, 221
BsmFI GGGAC 1 cut(s) 570
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 4 cut(s) 88, 136, 168, 473
Bsp1286I GDGCHC 1 cut(s) 498
Bsp143I GATC 2 cut(s) 268, 274
Bsp1720I GCTNAGC 1 cut(s) 492
Bsp19I CCATGG 1 cut(s) 474
BspACI CCGC 1 cut(s) 470
BspANI GGCC 4 cut(s) 88, 136, 168, 473
BspCNI CTCAG 5 cut(s) 77, 178, 364, 427, 484
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 601
BspT107I GGYRCC 1 cut(s) 599
BsrDI GCAATG 2 cut(s) 376, 465
BssECI CCNNGG 3 cut(s) 246, 384, 474
BssMI GATC 2 cut(s) 268, 274
BssT1I CCWWGG 1 cut(s) 474
Bst2UI CCWGG 2 cut(s) 247, 385
Bst4CI ACNGT 3 cut(s) 160, 336, 544
BstDEI CTNAG 6 cut(s) 64, 186, 284, 351, 435, 492
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 4 cut(s) 106, 484, 535, 667
BstHHI GCGC 1 cut(s) 81
BstKTI GATC 2 cut(s) 271, 277
BstMAI GTCTC 4 cut(s) 147, 149, 221, 383
BstMBI GATC 2 cut(s) 268, 274
BstMWI GCNNNNNNNGC 1 cut(s) 85
BstNI CCWGG 2 cut(s) 247, 385
BstSCI CCNGG 3 cut(s) 245, 383, 647
BstSFI CTRYAG 1 cut(s) 701
BstV1I GCAGC 2 cut(s) 593, 616
BstV2I GAAGAC 2 cut(s) 258, 623
BsuRI GGCC 4 cut(s) 88, 136, 168, 473
BtgI CCRYGG 1 cut(s) 474
BtsCI GGATG 4 cut(s) 106, 484, 535, 667
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 381
CciI TCATGA 1 cut(s) 271
CfoI GCGC 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 439
CseI GACGC 1 cut(s) 57
Csp6I GTAC 2 cut(s) 123, 129
CviAII CATG 4 cut(s) 233, 272, 475, 547
CviQI GTAC 2 cut(s) 123, 129
DdeI CTNAG 6 cut(s) 64, 186, 284, 351, 435, 492
DpnI GATC 2 cut(s) 270, 276
DpnII GATC 2 cut(s) 268, 274
EaeI YGGCCR 1 cut(s) 471
Eco130I CCWWGG 1 cut(s) 474
Eco147I AGGCCT 1 cut(s) 136
Eco47I GGWCC 1 cut(s) 439
Eco57I CTGAAG 1 cut(s) 635
EcoRII CCWGG 2 cut(s) 245, 383
EcoT14I CCWWGG 1 cut(s) 474
ErhI CCWWGG 1 cut(s) 474
Esp3I CGTCTC 3 cut(s) 147, 149, 221
FaeI CATG 4 cut(s) 236, 275, 478, 550
FaqI GGGAC 1 cut(s) 570
FatI CATG 4 cut(s) 232, 271, 474, 546
Fnu4HI GCNGC 3 cut(s) 471, 582, 630
FokI GGATG 4 cut(s) 93, 491, 542, 674
Fsp4HI GCNGC 3 cut(s) 471, 582, 630
FspBI CTAG 2 cut(s) 132, 686
GlaI GCGC 1 cut(s) 80
GluI GCNGC 3 cut(s) 471, 582, 630
HaeIII GGCC 4 cut(s) 88, 136, 168, 473
HapII CCGG 1 cut(s) 648
HgaI GACGC 1 cut(s) 57
HhaI GCGC 1 cut(s) 81
Hin1II CATG 4 cut(s) 236, 275, 478, 550
Hin6I GCGC 1 cut(s) 79
HinP1I GCGC 1 cut(s) 79
HincII GTYRAC 1 cut(s) 594
HindII GTYRAC 1 cut(s) 594
HindIII AAGCTT 1 cut(s) 326
HinfI GANTC 3 cut(s) 182, 346, 391
HpaII CCGG 1 cut(s) 648
HphI GGTGA 1 cut(s) 532
Hpy166II GTNNAC 1 cut(s) 594
Hpy188I TCNGA 1 cut(s) 187
Hpy188III TCNNGA 2 cut(s) 154, 272
Hpy8I GTNNAC 1 cut(s) 594
Hpy99I CGWCG 2 cut(s) 73, 216
HpyAV CCTTC 5 cut(s) 128, 147, 158, 207, 509
HpyCH4III ACNGT 3 cut(s) 160, 336, 544
HpyCH4V TGCA 5 cut(s) 8, 290, 374, 406, 624
HpyF10VI GCNNNNNNNGC 1 cut(s) 85
HpyF3I CTNAG 6 cut(s) 64, 186, 284, 351, 435, 492
Hsp92II CATG 4 cut(s) 236, 275, 478, 550
HspAI GCGC 1 cut(s) 79
Kzo9I GATC 2 cut(s) 268, 274
Lsp1109I GCAGC 2 cut(s) 593, 616
LweI GCATC 2 cut(s) 295, 593
MaeI CTAG 2 cut(s) 132, 686
MaeIII GTNAC 2 cut(s) 20, 515
MalI GATC 2 cut(s) 270, 276
MboI GATC 2 cut(s) 268, 274
MboII GAAGA 2 cut(s) 263, 628
MfeI CAATTG 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 498
MluCI AATT 3 cut(s) 82, 92, 102
MlyI GAGTC 1 cut(s) 385
MnlI CCTC 9 cut(s) 26, 268, 360, 411, 430, 568, 571, 613, 658
MslI CAYNNNNRTG 2 cut(s) 545, 551
MspI CCGG 1 cut(s) 648
MspR9I CCNGG 3 cut(s) 247, 385, 649
MunI CAATTG 1 cut(s) 82
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 2 cut(s) 247, 385
MwoI GCNNNNNNNGC 1 cut(s) 85
NciI CCSGG 1 cut(s) 649
NcoI CCATGG 1 cut(s) 474
NdeII GATC 2 cut(s) 268, 274
NlaIII CATG 4 cut(s) 236, 275, 478, 550
NlaIV GGNNCC 1 cut(s) 601
PagI TCATGA 1 cut(s) 271
PceI AGGCCT 1 cut(s) 136
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 182, 346
PkrI GCNGC 3 cut(s) 472, 583, 631
PleI GAGTC 1 cut(s) 385
PpsI GAGTC 1 cut(s) 385
Psp6I CCWGG 2 cut(s) 245, 383
PspGI CCWGG 2 cut(s) 245, 383
PspN4I GGNNCC 1 cut(s) 601
PspPI GGNCC 1 cut(s) 439
RsaI GTAC 2 cut(s) 124, 130
RsaNI GTAC 2 cut(s) 123, 129
RseI CAYNNNNRTG 2 cut(s) 545, 551
SatI GCNGC 3 cut(s) 471, 582, 630
Sau3AI GATC 2 cut(s) 268, 274
Sau96I GGNCC 1 cut(s) 439
ScaI AGTACT 1 cut(s) 130
SchI GAGTC 1 cut(s) 385
ScrFI CCNGG 3 cut(s) 247, 385, 649
SduI GDGCHC 1 cut(s) 498
SetI ASST 9 cut(s) 120, 330, 357, 436, 441, 458, 501, 601, 646
SfaNI GCATC 2 cut(s) 295, 593
SfcI CTRYAG 1 cut(s) 701
SinI GGWCC 1 cut(s) 439
SmiMI CAYNNNNRTG 2 cut(s) 545, 551
Sse9I AATT 3 cut(s) 82, 92, 102
SseBI AGGCCT 1 cut(s) 136
SsiI CCGC 1 cut(s) 470
SspI AATATT 1 cut(s) 37
SspMI CTAG 2 cut(s) 132, 686
StuI AGGCCT 1 cut(s) 136
StyD4I CCNGG 3 cut(s) 245, 383, 647
StyI CCWWGG 1 cut(s) 474
TaaI ACNGT 3 cut(s) 160, 336, 544
TaqI TCGA 2 cut(s) 153, 277
TasI AATT 3 cut(s) 82, 92, 102
TatI WGTACW 1 cut(s) 128
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 2 cut(s) 182, 346
TscAI CASTG 1 cut(s) 381
TseI GCWGC 2 cut(s) 581, 629
TspDTI ATGAA 3 cut(s) 17, 95, 189
TspRI CASTG 1 cut(s) 381
VpaK11BI GGWCC 1 cut(s) 439
XcmI CCANNNNNNNNNTGG 1 cut(s) 472
XspI CTAG 2 cut(s) 132, 686
ZrmI AGTACT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.