Rorug04G0380100

Phosphoglycerate mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0010498
Physical Location & Seq
Reverse (-)
55094411 .. 55096501
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0380100.1

Sequence Viewer

Length: 1551 bp
ATGAATTCTTTGGGAGGCCTAGTGACCACTATCTCAAGCTTTCTCTGTGCATTTCTTCTCTTAGCTCTGATCAAGATCTTTCACAAACTATGGTGGACTCCGATTCGCATACAGAAACTGATGGCTTTGCAGGGAATCAAAGGCCCTTCGTACAGATTCATCCATGGAAACACCAAAGAGATCTCCGAGATGAAAAGGGAAGCCATGAGCAGAAGGCTCACAAACTTTTCCCATGACATATTTTCTCGAGTCCAACCTCATATTCACTCATGGAACAAGACCTATGGGAAGAATTTTGTTCAATGGTATGGTTGTCAAGCTCAGCTGGTGATTTCGGAGCCCGAATTGATCAAAGAGATACTGAATAAAAAGAACACTTATCCGAAAAGGAAGCTCTTACCATTGATGAAGAAGATATTTGGAGAAGGTCTAGCCACAACAACCGATCCCGAAAAATGGGAGAAATTGCGAAAACAGGCCGACCATGCCTTCCATGGAGACAGCTTAAAAAGTATGATTCCAACGATGATAGATAGTACTGAGACGATGCTACAGAGGTGGAAAAGCCATGATGGCAAAGAGATTGAGGTGTATGAAGAATTTAAATTGTTGACTTCGGAAGTGATTTCGAAGACAGCATTCGGCAGTAGCTATTTAGAAGGGAAGAACATTTTTGATATGTTCAACAAGTTATGCTCCTTGTTACTCAAAACTTCTTTCAAAATCAGATTTCCTGGCATCAGCAAGTTTTTCAAAACTAGCGATGAGATTGAATCAGAGAAACTTGAGAAAGGAATACATGACTCCATAGTGGAGATTGTTAAGAAAAGAGAAAAGGAGACAATGACTGCAGAAGAAGACAACTTTGGGAATGATTTTCTAGGATTGCTTTTAAAGGCTCATCATGGTGCCAATGACAAGCAGCGGATTTCAGTGGATGAACTGGTTGATGAGTGCAAAATCTTTTACTTTGCTGGACACGAAACCACTAATGCTTTGCTTGCTTGGACCATCCTTCTTCTGGCACTCCATCCTGATTGGCAAGAAGAAGCAAGAAAGGAGGTCTTACAATCATTTGGCAAACAAACTCCAGATCCTGATGGCCTTGCCAAACTAAAAACAATGAGTATGATCATCAATGAGACTTTGAGGTTATACGCACCAGTAATATCCTATGATAGGAGAGTTGAAAGGGAAGTTAGACTGGGAAATCTCATTATTCCTGCTGGTTTCGAATTGTACATCTCCAGTTTAGCACTTCACCATGAGCCTCAATTCTGGGGAGAAGATGTGCATCTTTTCAAGCCAGAGCGATTCTCTGACGGTGTTGTTAAAGCTACTAATAATAACATAACCGCATTCTTACCTTTTGGAATGGGACCTCGAATCTGTCCAGGGTTGAACTTTGCTACCATTGAAGCCAAAGTTGTTCTTTCAATGATTCTACAGAACTATTCCTTCACCCTTTCCCCAGGTTATGTCCACTCGCCCTATGAGAATCTTATTGTTCGCCCACAACATGGTGTTCAAGTAATGCTACGCTCACTGTGA

Protein Analysis

516

Amino Acids

59.23

Weight (kDa)

8.77

Isoelectric Point (pI)

39.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 87 - 511 4.6e-82 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52155 AT3G52155 AT3G52155 AT3G52155
fragaria_vesca FvH4_3g00011
malus_domestica MD10G1342400.v1.1
prunus_persica Prupe.4G000400_v2.0.a1
pyrus_communis pycom10g29170
rosa_chinensis RchiOBHm_Chr5g0000011
rosa_laevigata RLG00000030832
rosa_multiflora Rmu_sc0007644.1_g000011
rosa_roxburghii Rroxscaffold_1G00076050
rosa_rugosa Rorug04G0380000 Rorug04G0380100 Rorug04G0380200 Rorug04G0380300
rosa_samantha Rh5AG000200 Rh5BG001400 Rh5CG000200 Rh5DG000200
rosa_wichuraiana Rw5G000050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 908
AccB7I CCANNNNNTGG 1 cut(s) 1520
AciI CCGC 2 cut(s) 925, 1356
AclWI GGATC 2 cut(s) 440, 1088
AcsI RAATTY 3 cut(s) 4, 292, 599
AfaI GTAC 3 cut(s) 152, 538, 1241
AfiI CCNNNNNNNGG 4 cut(s) 456, 1021, 1179, 1520
AjnI CCWGG 3 cut(s) 733, 1393, 1471
AjuI GAANNNNNNNTTGG 4 cut(s) 246, 278, 849, 881
AluBI AGCT 8 cut(s) 39, 65, 320, 325, 394, 504, 651, 1337
AluI AGCT 8 cut(s) 39, 65, 320, 325, 394, 504, 651, 1337
Alw26I GTCTC 4 cut(s) 492, 536, 833, 1136
AlwI GGATC 2 cut(s) 440, 1088
AlwNI CAGNNNCTG 2 cut(s) 118, 1097
Ama87I CYCGRG 1 cut(s) 246
AoxI GGCC 4 cut(s) 16, 142, 477, 1102
ApeKI GCWGC 1 cut(s) 922
ApoI RAATTY 3 cut(s) 4, 292, 599
AspS9I GGNCC 3 cut(s) 143, 1008, 1379
AsuHPI GGTGA 3 cut(s) 340, 1253, 1453
AsuII TTCGAA 2 cut(s) 629, 1233
AvaI CYCGRG 1 cut(s) 246
AvaII GGWCC 2 cut(s) 1008, 1379
BanI GGYRCC 1 cut(s) 908
BanII GRGCYC 1 cut(s) 342
BbsI GAAGAC 2 cut(s) 638, 864
BbvI GCAGC 1 cut(s) 934
BccI CCATC 5 cut(s) 115, 566, 1019, 1038, 1094
BciT130I CCWGG 3 cut(s) 735, 1395, 1473
BclI TGATCA 3 cut(s) 69, 348, 1131
BcoDI GTCTC 4 cut(s) 492, 536, 833, 1136
BfaI CTAG 4 cut(s) 20, 431, 759, 881
BfmI CTRYAG 3 cut(s) 551, 849, 1445
BglI GCCNNNNNGGC 1 cut(s) 573
BglII AGATCT 2 cut(s) 75, 180
BisI GCNGC 1 cut(s) 923
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 1 cut(s) 924
BmcAI AGTACT 1 cut(s) 538
Bme1390I CCNGG 3 cut(s) 735, 1395, 1473
Bme18I GGWCC 2 cut(s) 1008, 1379
BmeT110I CYCGRG 1 cut(s) 246
BmgT120I GGNCC 3 cut(s) 143, 1008, 1379
BmiI GGNNCC 3 cut(s) 339, 910, 1380
BmrFI CCNGG 3 cut(s) 735, 1395, 1473
BmrI ACTGGG 1 cut(s) 1214
BmsI GCATC 3 cut(s) 537, 747, 1303
BmuI ACTGGG 1 cut(s) 1214
BpiI GAAGAC 2 cut(s) 638, 864
BplI GAGNNNNNCTC 2 cut(s) 1301, 1333
BpmI CTGGAG 2 cut(s) 1074, 1231
Bpu1102I GCTNAGC 1 cut(s) 321
Bpu14I TTCGAA 2 cut(s) 629, 1233
BpuEI CTTGAG 2 cut(s) 19, 806
BsaBI GATNNNNATC 2 cut(s) 74, 1293
BsaJI CCNNGG 4 cut(s) 163, 493, 1394, 1471
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 1275, 1305
Bsc4I CCNNNNNNNGG 4 cut(s) 456, 1021, 1179, 1520
Bse1I ACTGG 4 cut(s) 948, 1163, 1209, 1248
Bse8I GATNNNNATC 2 cut(s) 74, 1293
BseBI CCWGG 3 cut(s) 735, 1395, 1473
BseDI CCNNGG 4 cut(s) 163, 493, 1394, 1471
BseGI GGATG 4 cut(s) 159, 943, 1011, 1030
BseJI GATNNNNATC 2 cut(s) 74, 1293
BseLI CCNNNNNNNGG 4 cut(s) 456, 1021, 1179, 1520
BseMII CTCAG 2 cut(s) 335, 531
BseNI ACTGG 4 cut(s) 948, 1163, 1209, 1248
BseXI GCAGC 1 cut(s) 934
BshFI GGCC 4 cut(s) 18, 144, 479, 1104
BshNI GGYRCC 1 cut(s) 908
BsiHKCI CYCGRG 1 cut(s) 246
BslFI GGGAC 1 cut(s) 1392
BslI CCNNNNNNNGG 4 cut(s) 456, 1021, 1179, 1520
BsmAI GTCTC 4 cut(s) 492, 536, 833, 1136
BsmBI CGTCTC 1 cut(s) 536
BsmFI GGGAC 1 cut(s) 1392
BsmI GAATGC 2 cut(s) 638, 1358
BsnI GGCC 4 cut(s) 18, 144, 479, 1104
BsoBI CYCGRG 1 cut(s) 246
Bsp119I TTCGAA 2 cut(s) 629, 1233
Bsp1286I GDGCHC 1 cut(s) 342
Bsp1407I TGTACA 1 cut(s) 1239
Bsp143I GATC 7 cut(s) 69, 75, 180, 348, 445, 1093, 1131
Bsp1720I GCTNAGC 1 cut(s) 321
Bsp19I CCATGG 2 cut(s) 163, 493
BspACI CCGC 2 cut(s) 925, 1356
BspANI GGCC 4 cut(s) 18, 144, 479, 1104
BspCNI CTCAG 2 cut(s) 334, 532
BspLI GGNNCC 3 cut(s) 339, 910, 1380
BspMAI CTGCAG 1 cut(s) 853
BspPI GGATC 2 cut(s) 440, 1088
BspT104I TTCGAA 2 cut(s) 629, 1233
BspT107I GGYRCC 1 cut(s) 908
BsrGI TGTACA 1 cut(s) 1239
BsrI ACTGG 4 cut(s) 948, 1163, 1209, 1248
BssECI CCNNGG 4 cut(s) 163, 493, 1394, 1471
BssMI GATC 7 cut(s) 69, 75, 180, 348, 445, 1093, 1131
BssT1I CCWWGG 2 cut(s) 163, 493
Bst2UI CCWGG 3 cut(s) 735, 1395, 1473
Bst4CI ACNGT 2 cut(s) 1325, 1548
BstAUI TGTACA 1 cut(s) 1239
BstBI TTCGAA 2 cut(s) 629, 1233
BstC8I GCNNGC 1 cut(s) 1002
BstDEI CTNAG 3 cut(s) 61, 321, 540
BstDSI CCRYGG 2 cut(s) 163, 493
BstENI CCTNNNNNAGG 1 cut(s) 1177
BstF5I GGATG 4 cut(s) 159, 943, 1011, 1030
BstKTI GATC 7 cut(s) 72, 78, 183, 351, 448, 1096, 1134
BstMAI GTCTC 4 cut(s) 492, 536, 833, 1136
BstMBI GATC 7 cut(s) 69, 75, 180, 348, 445, 1093, 1131
BstMWI GCNNNNNNNGC 3 cut(s) 485, 573, 1001
BstNI CCWGG 3 cut(s) 735, 1395, 1473
BstSCI CCNGG 3 cut(s) 733, 1393, 1471
BstSFI CTRYAG 3 cut(s) 551, 849, 1445
BstV1I GCAGC 1 cut(s) 934
BstV2I GAAGAC 2 cut(s) 638, 864
BstX2I RGATCY 3 cut(s) 75, 180, 1093
BstYI RGATCY 3 cut(s) 75, 180, 1093
BsuRI GGCC 4 cut(s) 18, 144, 479, 1104
BtgI CCRYGG 2 cut(s) 163, 493
BtgZI GCGATG 1 cut(s) 777
BtsCI GGATG 4 cut(s) 159, 943, 1011, 1030
BtsIMutI CAGTG 2 cut(s) 939, 1544
Cac8I GCNNGC 1 cut(s) 1002
CaiI CAGNNNCTG 2 cut(s) 118, 1097
Cfr13I GGNCC 3 cut(s) 143, 1008, 1379
Csp6I GTAC 3 cut(s) 151, 537, 1240
CviQI GTAC 3 cut(s) 151, 537, 1240
DdeI CTNAG 3 cut(s) 61, 321, 540
DpnI GATC 7 cut(s) 71, 77, 182, 350, 447, 1095, 1133
DpnII GATC 7 cut(s) 69, 75, 180, 348, 445, 1093, 1131
DraI TTTAAA 2 cut(s) 604, 894
Eco130I CCWWGG 2 cut(s) 163, 493
Eco147I AGGCCT 1 cut(s) 18
Eco24I GRGCYC 1 cut(s) 342
Eco47I GGWCC 2 cut(s) 1008, 1379
Eco88I CYCGRG 1 cut(s) 246
EcoNI CCTNNNNNAGG 1 cut(s) 1177
EcoO109I RGGNCCY 2 cut(s) 143, 1379
EcoRI GAATTC 1 cut(s) 4
EcoRII CCWGG 3 cut(s) 733, 1393, 1471
EcoT14I CCWWGG 2 cut(s) 163, 493
EcoT38I GRGCYC 1 cut(s) 342
ErhI CCWWGG 2 cut(s) 163, 493
Esp3I CGTCTC 1 cut(s) 536
FalI AAGNNNNNCTT 4 cut(s) 1049, 1081, 1416, 1448
FaqI GGGAC 1 cut(s) 1392
FbaI TGATCA 3 cut(s) 69, 348, 1131
Fnu4HI GCNGC 1 cut(s) 923
FokI GGATG 4 cut(s) 146, 950, 998, 1017
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 923
FspBI CTAG 4 cut(s) 20, 431, 759, 881
GluI GCNGC 1 cut(s) 923
GsuI CTGGAG 2 cut(s) 1074, 1231
HaeIII GGCC 4 cut(s) 18, 144, 479, 1104
HincII GTYRAC 1 cut(s) 612
HindII GTYRAC 1 cut(s) 612
HindIII AAGCTT 1 cut(s) 37
HphI GGTGA 3 cut(s) 340, 1253, 1453
Hpy166II GTNNAC 3 cut(s) 96, 612, 1483
Hpy188I TCNGA 9 cut(s) 69, 102, 187, 337, 384, 619, 728, 778, 1321
Hpy188III TCNNGA 6 cut(s) 73, 246, 449, 1034, 1091, 1097
Hpy8I GTNNAC 3 cut(s) 96, 612, 1483
HpyAV CCTTC 7 cut(s) 156, 207, 419, 499, 653, 1025, 1468
HpyCH4III ACNGT 2 cut(s) 1325, 1548
HpyCH4V TGCA 5 cut(s) 50, 130, 851, 957, 1294
HpyF10VI GCNNNNNNNGC 3 cut(s) 485, 573, 1001
HpyF3I CTNAG 3 cut(s) 61, 321, 540
Ksp22I TGATCA 3 cut(s) 69, 348, 1131
Kzo9I GATC 7 cut(s) 69, 75, 180, 348, 445, 1093, 1131
LmnI GCTCC 2 cut(s) 337, 701
Lsp1109I GCAGC 1 cut(s) 934
LweI GCATC 3 cut(s) 537, 747, 1303
MaeI CTAG 4 cut(s) 20, 431, 759, 881
MaeIII GTNAC 2 cut(s) 22, 702
MalI GATC 7 cut(s) 71, 77, 182, 350, 447, 1095, 1133
MboI GATC 7 cut(s) 69, 75, 180, 348, 445, 1093, 1131
MflI RGATCY 3 cut(s) 75, 180, 1093
MhlI GDGCHC 1 cut(s) 342
MluCI AATT 8 cut(s) 4, 292, 344, 464, 599, 605, 1235, 1274
MlyI GAGTC 3 cut(s) 91, 258, 797
MmeI TCCRAC 2 cut(s) 277, 545
MnlI CCTC 8 cut(s) 8, 267, 549, 580, 1054, 1143, 1281, 1392
MseI TTAA 5 cut(s) 506, 603, 822, 893, 1332
MslI CAYNNNNRTG 1 cut(s) 906
MspA1I CMGCKG 2 cut(s) 325, 925
MspR9I CCNGG 3 cut(s) 735, 1395, 1473
Mva1269I GAATGC 2 cut(s) 638, 1358
MvaI CCWGG 3 cut(s) 735, 1395, 1473
MwoI GCNNNNNNNGC 3 cut(s) 485, 573, 1001
NcoI CCATGG 2 cut(s) 163, 493
NdeII GATC 7 cut(s) 69, 75, 180, 348, 445, 1093, 1131
NlaIV GGNNCC 3 cut(s) 339, 910, 1380
NmuCI GTSAC 1 cut(s) 22
NspV TTCGAA 2 cut(s) 629, 1233
PaeR7I CTCGAG 1 cut(s) 246
PceI AGGCCT 1 cut(s) 18
PctI GAATGC 2 cut(s) 638, 1358
PfeI GAWTC 9 cut(s) 103, 135, 156, 517, 773, 1314, 1386, 1441, 1498
PflMI CCANNNNNTGG 1 cut(s) 1520
PkrI GCNGC 1 cut(s) 924
PleI GAGTC 3 cut(s) 91, 257, 797
PpsI GAGTC 3 cut(s) 91, 257, 797
PpuMI RGGWCCY 1 cut(s) 1379
Psp5II RGGWCCY 1 cut(s) 1379
Psp6I CCWGG 3 cut(s) 733, 1393, 1471
PspGI CCWGG 3 cut(s) 733, 1393, 1471
PspN4I GGNNCC 3 cut(s) 339, 910, 1380
PspPI GGNCC 3 cut(s) 143, 1008, 1379
PspPPI RGGWCCY 1 cut(s) 1379
PstI CTGCAG 1 cut(s) 853
PstNI CAGNNNCTG 2 cut(s) 118, 1097
PsuI RGATCY 3 cut(s) 75, 180, 1093
PvuII CAGCTG 1 cut(s) 325
RsaI GTAC 3 cut(s) 152, 538, 1241
RsaNI GTAC 3 cut(s) 151, 537, 1240
RseI CAYNNNNRTG 1 cut(s) 906
SaqAI TTAA 5 cut(s) 506, 603, 822, 893, 1332
SatI GCNGC 1 cut(s) 923
Sau3AI GATC 7 cut(s) 69, 75, 180, 348, 445, 1093, 1131
Sau96I GGNCC 3 cut(s) 143, 1008, 1379
ScaI AGTACT 1 cut(s) 538
SchI GAGTC 3 cut(s) 91, 258, 797
ScrFI CCNGG 3 cut(s) 735, 1395, 1473
SduI GDGCHC 1 cut(s) 342
SfaNI GCATC 3 cut(s) 537, 747, 1303
SfcI CTRYAG 3 cut(s) 551, 849, 1445
Sfr274I CTCGAG 1 cut(s) 246
SfuI TTCGAA 2 cut(s) 629, 1233
SinI GGWCC 2 cut(s) 1008, 1379
SlaI CTCGAG 1 cut(s) 246
SmiI ATTTAAAT 1 cut(s) 604
SmiMI CAYNNNNRTG 1 cut(s) 906
SmlI CTYRAG 3 cut(s) 34, 246, 785
SmoI CTYRAG 3 cut(s) 34, 246, 785
Sse9I AATT 8 cut(s) 4, 292, 344, 464, 599, 605, 1235, 1274
SseBI AGGCCT 1 cut(s) 18
SsiI CCGC 2 cut(s) 925, 1356
SspMI CTAG 4 cut(s) 20, 431, 759, 881
StuI AGGCCT 1 cut(s) 18
StyD4I CCNGG 3 cut(s) 733, 1393, 1471
StyI CCWWGG 2 cut(s) 163, 493
SwaI ATTTAAAT 1 cut(s) 604
TaaI ACNGT 2 cut(s) 1325, 1548
TaqI TCGA 4 cut(s) 247, 629, 1233, 1384
TasI AATT 8 cut(s) 4, 292, 344, 464, 599, 605, 1235, 1274
TatI WGTACW 2 cut(s) 536, 1239
TfiI GAWTC 9 cut(s) 103, 135, 156, 517, 773, 1314, 1386, 1441, 1498
Tru1I TTAA 5 cut(s) 506, 603, 822, 893, 1332
Tru9I TTAA 5 cut(s) 506, 603, 822, 893, 1332
TscAI CASTG 2 cut(s) 939, 1551
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 1 cut(s) 922
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 6 cut(s) 17, 148, 206, 422, 609, 954
TspRI CASTG 2 cut(s) 939, 1551
Van91I CCANNNNNTGG 1 cut(s) 1520
VpaK11BI GGWCC 2 cut(s) 1008, 1379
XagI CCTNNNNNAGG 1 cut(s) 1177
XapI RAATTY 3 cut(s) 4, 292, 599
XcmI CCANNNNNNNNNTGG 2 cut(s) 491, 1018
XhoI CTCGAG 1 cut(s) 246
XspI CTAG 4 cut(s) 20, 431, 759, 881
ZrmI AGTACT 1 cut(s) 538
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.