Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007644.1

Orthogroup ID

OG0010498

Physical Location & Seq

Genomic Coordinates Reverse (-)

31579 .. 37490

Gene Structure 5912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007644.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1203 bp

ctgggtcgatcgattcaatctacaggagagattgatgtggttgggagttcgccgaaaagagatggcgcctttggagggctgaaaggccatgaaatgtggagagaagaactccccttagagaggaggccagcatcggccgccattggagtaccccaagaacggggagatttgggttgtggtgatcgagtgaagaggtggaaaggtgatgtggttggtgagagtgagagtgagagctcgcccagtcatggcaaagctcatgatggcagtagcaaaagatgggtacatggagaacttgaaggaaatagagggaagagaaagagaaggaaaatgaaggaaaagggcagatctggtcaagaaaaaggctgggtggaaggagtggcgatggagataaaagtagtggtggtggaattggaggtgatgaacattagagggtctcagctctctcagacgagaaccacagctctgcgcctcggcagtatgaatgcacttaccctctgtaaccataaccataatatttgtatcaatagccaccatcatttctcagagtcggcgaagcgcaattggcccaaattgttttcaattcatcccagaaaccttcggacaagtactgggccttcgtctctggtaatcgagacggtggaaggccaagttgccgctgattctgagcaaactccttcatctgttgctcgtcgtctcattctgcttcgtcatgccaagagttcctgggaagacccctcgctgaaagatcatgatcgacccctgagtgcaaaaggacaagccgatgctgtcgaaatctctcacaagcttcaacagttgggctggattcctcagcttattttatccagcaatgcagtgcgaactagggagactcttaccataatgcagcgacaagtgaggggcttcttggaagctgaggtccattacttttccagcttttattccattgcggccatggatgggcagactgctgagcaccttcaacatattatctgtaactattcaagggatgacatactcaccgtcatgtgtatgggacataataggggttgggaggaggcagcatcaatgttgacaggtgcctccatagaactgaagacttgcaacgctgctttgcttgaagctgccgggaaatcttgggatgaggcatttgctctggcaggactaggggggtggaaactgcagggcattgtgaaaccaagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

His_Phos_1

Protein Analysis

400

Amino Acids

44.11

Weight (kDa)

8.96

Isoelectric Point (pI)

57.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010498)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G52155 AT3G52155 AT3G52155 AT3G52155
fragaria_vesca	FvH4_3g00011
malus_domestica	MD10G1342400.v1.1
prunus_persica	Prupe.4G000400_v2.0.a1
pyrus_communis	pycom10g29170
rosa_chinensis	RchiOBHm_Chr5g0000011
rosa_laevigata	RLG00000030832
rosa_multiflora	Rmu_sc0007644.1_g000011
rosa_roxburghii	Rroxscaffold_1G00076050
rosa_rugosa	Rorug04G0380000 Rorug04G0380100 Rorug04G0380200 Rorug04G0380300
rosa_samantha	Rh5AG000200 Rh5BG001400 Rh5CG000200 Rh5DG000200
rosa_wichuraiana	Rw5G000050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	65, 1076
AciI	CCGC	3 cut(s)	138, 654, 947
AcoI	YGGCCR	2 cut(s)	135, 948
AcuI	CTGAAG	1 cut(s)	1112
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	3 cut(s)	150, 282, 607
AfiI	CCNNNNNNNGG	6 cut(s)	75, 120, 159, 160, 245, 957
AgsI	TTSAA	7 cut(s)	17, 296, 579, 809, 980, 1002, 1118
AjnI	CCWGG	1 cut(s)	722
AluBI	AGCT	9 cut(s)	234, 254, 439, 461, 805, 832, 911, 933, 1121
AluI	AGCT	9 cut(s)	234, 254, 439, 461, 805, 832, 911, 933, 1121
Alw21I	GWGCWC	2 cut(s)	236, 975
Alw26I	GTCTC	5 cut(s)	438, 624, 626, 698, 860
AoxI	GGCC	7 cut(s)	85, 125, 135, 563, 611, 643, 948
ApeKI	GCWGC	4 cut(s)	883, 1058, 1106, 1121
AspLEI	GCGC	3 cut(s)	68, 468, 558
AspS9I	GGNCC	3 cut(s)	564, 611, 916
AsuC2I	CCSGG	1 cut(s)	1126
AsuHPI	GGTGA	5 cut(s)	191, 215, 227, 427, 1009
AvaII	GGWCC	1 cut(s)	916
BanI	GGYRCC	2 cut(s)	65, 1076
BanII	GRGCYC	1 cut(s)	236
BarI	GAAGNNNNNNTAC	2 cut(s)	598, 630
BbsI	GAAGAC	2 cut(s)	735, 1100
Bbv12I	GWGCWC	2 cut(s)	236, 975
BbvCI	CCTCAGC	2 cut(s)	828, 912
BbvI	GCAGC	4 cut(s)	895, 1070, 1093, 1108
BccI	CCATC	6 cut(s)	56, 254, 270, 376, 540, 950
BciT130I	CCWGG	1 cut(s)	724
BcnI	CCSGG	1 cut(s)	1126
BcoDI	GTCTC	5 cut(s)	438, 624, 626, 698, 860
BfaI	CTAG	2 cut(s)	861, 1163
BfmI	CTRYAG	2 cut(s)	21, 1178
BfoI	RGCGCY	1 cut(s)	69
BglII	AGATCT	1 cut(s)	344
BisI	GCNGC	7 cut(s)	138, 654, 884, 948, 1059, 1107, 1122
BlpI	GCTNAGC	1 cut(s)	969
BlsI	GCNGC	7 cut(s)	139, 655, 885, 949, 1060, 1108, 1123
BmcAI	AGTACT	1 cut(s)	607
Bme1390I	CCNGG	2 cut(s)	724, 1126
Bme18I	GGWCC	1 cut(s)	916
BmgT120I	GGNCC	3 cut(s)	564, 611, 916
BmiI	GGNNCC	2 cut(s)	67, 1078
BmrFI	CCNGG	2 cut(s)	724, 1126
BmrI	ACTGGG	2 cut(s)	234, 618
BmsI	GCATC	3 cut(s)	140, 772, 1070
BmuI	ACTGGG	2 cut(s)	234, 618
BpiI	GAAGAC	2 cut(s)	735, 1100
BplI	GAGNNNNNCTC	2 cut(s)	93, 125
Bpu10I	CCTNAGC	2 cut(s)	828, 912
Bpu1102I	GCTNAGC	1 cut(s)	969
BpuMI	CCSGG	1 cut(s)	1126
Bsa29I	ATCGAT	1 cut(s)	11
BsaBI	GATNNNNATC	1 cut(s)	750
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	438
BsaJI	CCNNGG	3 cut(s)	469, 723, 951
Bsc4I	CCNNNNNNNGG	6 cut(s)	75, 120, 159, 160, 245, 957
Bse1I	ACTGG	2 cut(s)	240, 613
Bse3DI	GCAATG	2 cut(s)	853, 942
Bse8I	GATNNNNATC	1 cut(s)	750
BseBI	CCWGG	1 cut(s)	724
BseCI	ATCGAT	1 cut(s)	11
BseDI	CCNNGG	3 cut(s)	469, 723, 951
BseGI	GGATG	4 cut(s)	583, 961, 1012, 1144
BseJI	GATNNNNATC	1 cut(s)	750
BseLI	CCNNNNNNNGG	6 cut(s)	75, 120, 159, 160, 245, 957
BseMI	GCAATG	2 cut(s)	853, 942
BseMII	CTCAG	8 cut(s)	449, 458, 555, 654, 752, 842, 903, 960
BseNI	ACTGG	2 cut(s)	240, 613
BseRI	GAGGAG	2 cut(s)	136, 1067
BseX3I	CGGCCG	1 cut(s)	135
BseXI	GCAGC	4 cut(s)	895, 1070, 1093, 1108
BseYI	CCCAGC	1 cut(s)	363
Bsh1285I	CGRYCG	2 cut(s)	11, 138
BshFI	GGCC	7 cut(s)	87, 127, 137, 565, 613, 645, 950
BshNI	GGYRCC	2 cut(s)	65, 1076
BshVI	ATCGAT	1 cut(s)	11
BsiEI	CGRYCG	2 cut(s)	11, 138
BsiHKAI	GWGCWC	2 cut(s)	236, 975
BsiSI	CCGG	1 cut(s)	1125
BslFI	GGGAC	1 cut(s)	1047
BslI	CCNNNNNNNGG	6 cut(s)	75, 120, 159, 160, 245, 957
BsmAI	GTCTC	5 cut(s)	438, 624, 626, 698, 860
BsmBI	CGTCTC	3 cut(s)	624, 626, 698
BsmFI	GGGAC	1 cut(s)	1047
BsmI	GAATGC	1 cut(s)	487
BsnI	GGCC	7 cut(s)	87, 127, 137, 565, 613, 645, 950
Bso31I	GGTCTC	1 cut(s)	438
Bsp1286I	GDGCHC	2 cut(s)	236, 975
Bsp143I	GATC	5 cut(s)	8, 181, 344, 745, 751
Bsp1720I	GCTNAGC	1 cut(s)	969
Bsp19I	CCATGG	1 cut(s)	951
BspACI	CCGC	3 cut(s)	138, 654, 947
BspANI	GGCC	7 cut(s)	87, 127, 137, 565, 613, 645, 950
BspCNI	CTCAG	8 cut(s)	448, 457, 554, 655, 753, 841, 904, 961
BspDI	ATCGAT	1 cut(s)	11
BspHI	TCATGA	2 cut(s)	256, 748
BspLI	GGNNCC	2 cut(s)	67, 1078
BspMAI	CTGCAG	1 cut(s)	1182
BspT107I	GGYRCC	2 cut(s)	65, 1076
BspTNI	GGTCTC	1 cut(s)	438
BsrDI	GCAATG	2 cut(s)	853, 942
BsrI	ACTGG	2 cut(s)	240, 613
BssECI	CCNNGG	3 cut(s)	469, 723, 951
BssMI	GATC	5 cut(s)	8, 181, 344, 745, 751
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	951
Bst2UI	CCWGG	1 cut(s)	724
Bst4CI	ACNGT	3 cut(s)	637, 813, 1021
Bst6I	CTCTTC	2 cut(s)	185, 305
BstACI	GRCGYC	1 cut(s)	66
BstC8I	GCNNGC	2 cut(s)	129, 236
BstDEI	CTNAG	9 cut(s)	115, 435, 444, 541, 663, 761, 828, 912, 969
BstDSI	CCRYGG	1 cut(s)	951
BstENI	CCTNNNNNAGG	1 cut(s)	118
BstF5I	GGATG	4 cut(s)	583, 961, 1012, 1144
BstH2I	RGCGCY	1 cut(s)	69
BstHHI	GCGC	3 cut(s)	68, 468, 558
BstKTI	GATC	5 cut(s)	11, 184, 347, 748, 754
BstMAI	GTCTC	5 cut(s)	438, 624, 626, 698, 860
BstMBI	GATC	5 cut(s)	8, 181, 344, 745, 751
BstMCI	CGRYCG	2 cut(s)	11, 138
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 562
BstNI	CCWGG	1 cut(s)	724
BstSCI	CCNGG	2 cut(s)	722, 1124
BstSFI	CTRYAG	2 cut(s)	21, 1178
BstV1I	GCAGC	4 cut(s)	895, 1070, 1093, 1108
BstV2I	GAAGAC	2 cut(s)	735, 1100
BstX2I	RGATCY	1 cut(s)	344
BstYI	RGATCY	1 cut(s)	344
BstZI	CGGCCG	1 cut(s)	135
Bsu15I	ATCGAT	1 cut(s)	11
BsuRI	GGCC	7 cut(s)	87, 127, 137, 565, 613, 645, 950
BsuTUI	ATCGAT	1 cut(s)	11
BtgI	CCRYGG	1 cut(s)	951
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	4 cut(s)	583, 961, 1012, 1144
BtsI	GCAGTG	1 cut(s)	858
BtsIMutI	CAGTG	1 cut(s)	858
Cac8I	GCNNGC	2 cut(s)	129, 236
CciI	TCATGA	2 cut(s)	256, 748
CfoI	GCGC	3 cut(s)	68, 468, 558
Cfr13I	GGNCC	3 cut(s)	564, 611, 916
ClaI	ATCGAT	1 cut(s)	11
Csp6I	GTAC	3 cut(s)	149, 281, 606
CviAII	CATG	8 cut(s)	89, 245, 257, 284, 710, 749, 952, 1024
CviQI	GTAC	3 cut(s)	149, 281, 606
DdeI	CTNAG	9 cut(s)	115, 435, 444, 541, 663, 761, 828, 912, 969
DinI	GGCGCC	1 cut(s)	67
DpnI	GATC	5 cut(s)	10, 183, 346, 747, 753
DpnII	GATC	5 cut(s)	8, 181, 344, 745, 751
EaeI	YGGCCR	2 cut(s)	135, 948
EagI	CGGCCG	1 cut(s)	135
Eam1104I	CTCTTC	2 cut(s)	185, 305
EarI	CTCTTC	2 cut(s)	185, 305
Ecl136II	GAGCTC	1 cut(s)	234
EclXI	CGGCCG	1 cut(s)	135
Eco130I	CCWWGG	1 cut(s)	951
Eco24I	GRGCYC	1 cut(s)	236
Eco31I	GGTCTC	1 cut(s)	438
Eco47I	GGWCC	1 cut(s)	916
Eco52I	CGGCCG	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	1112
EcoICRI	GAGCTC	1 cut(s)	234
EcoNI	CCTNNNNNAGG	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	722
EcoT14I	CCWWGG	1 cut(s)	951
EcoT38I	GRGCYC	1 cut(s)	236
EgeI	GGCGCC	1 cut(s)	67
EheI	GGCGCC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	951
Esp3I	CGTCTC	3 cut(s)	624, 626, 698
FaeI	CATG	8 cut(s)	92, 248, 260, 287, 713, 752, 955, 1027
FaqI	GGGAC	1 cut(s)	1047
FatI	CATG	8 cut(s)	88, 244, 256, 283, 709, 748, 951, 1023
Fnu4HI	GCNGC	7 cut(s)	138, 654, 884, 948, 1059, 1107, 1122
FokI	GGATG	4 cut(s)	570, 968, 1019, 1151
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	7 cut(s)	138, 654, 884, 948, 1059, 1107, 1122
FspBI	CTAG	2 cut(s)	861, 1163
GlaI	GCGC	3 cut(s)	67, 467, 557
GluI	GCNGC	7 cut(s)	138, 654, 884, 948, 1059, 1107, 1122
GsaI	CCCAGC	1 cut(s)	367
HaeII	RGCGCY	1 cut(s)	69
HaeIII	GGCC	7 cut(s)	87, 127, 137, 565, 613, 645, 950
HapII	CCGG	1 cut(s)	1125
HhaI	GCGC	3 cut(s)	68, 468, 558
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	8 cut(s)	92, 248, 260, 287, 713, 752, 955, 1027
Hin6I	GCGC	3 cut(s)	66, 466, 556
HinP1I	GCGC	3 cut(s)	66, 466, 556
HincII	GTYRAC	1 cut(s)	1071
HindII	GTYRAC	1 cut(s)	1071
HindIII	AAGCTT	1 cut(s)	803
HinfI	GANTC	5 cut(s)	13, 545, 659, 823, 868
HpaII	CCGG	1 cut(s)	1125
HphI	GGTGA	5 cut(s)	191, 215, 227, 427, 1009
Hpy166II	GTNNAC	1 cut(s)	1071
Hpy188I	TCNGA	4 cut(s)	447, 544, 600, 664
Hpy188III	TCNNGA	4 cut(s)	257, 353, 631, 749
Hpy8I	GTNNAC	1 cut(s)	1071
Hpy99I	CGWCG	1 cut(s)	693
HpyAV	CCTTC	9 cut(s)	290, 315, 325, 365, 605, 624, 635, 684, 986
HpyCH4III	ACNGT	3 cut(s)	637, 813, 1021
HpyCH4V	TGCA	6 cut(s)	485, 767, 851, 883, 1101, 1180
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 562
HpyF3I	CTNAG	9 cut(s)	115, 435, 444, 541, 663, 761, 828, 912, 969
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	8 cut(s)	92, 248, 260, 287, 713, 752, 955, 1027
HspAI	GCGC	3 cut(s)	66, 466, 556
KasI	GGCGCC	1 cut(s)	65
Kzo9I	GATC	5 cut(s)	8, 181, 344, 745, 751
Lsp1109I	GCAGC	4 cut(s)	895, 1070, 1093, 1108
LweI	GCATC	3 cut(s)	140, 772, 1070
MaeI	CTAG	2 cut(s)	861, 1163
MaeIII	GTNAC	2 cut(s)	497, 992
MalI	GATC	5 cut(s)	10, 183, 346, 747, 753
MboI	GATC	5 cut(s)	8, 181, 344, 745, 751
MboII	GAAGA	5 cut(s)	116, 202, 322, 740, 1105
MfeI	CAATTG	1 cut(s)	559
MflI	RGATCY	1 cut(s)	344
MhlI	GDGCHC	2 cut(s)	236, 975
MluCI	AATT	4 cut(s)	407, 559, 569, 579
Mly113I	GGCGCC	1 cut(s)	66
MlyI	GAGTC	2 cut(s)	554, 862
MslI	CAYNNNNRTG	2 cut(s)	1022, 1028
MspA1I	CMGCKG	1 cut(s)	656
MspI	CCGG	1 cut(s)	1125
MspR9I	CCNGG	2 cut(s)	724, 1126
MunI	CAATTG	1 cut(s)	559
Mva1269I	GAATGC	1 cut(s)	487
MvaI	CCWGG	1 cut(s)	724
MwoI	GCNNNNNNNGC	2 cut(s)	137, 562
NarI	GGCGCC	1 cut(s)	66
NciI	CCSGG	1 cut(s)	1126
NcoI	CCATGG	1 cut(s)	951
NdeII	GATC	5 cut(s)	8, 181, 344, 745, 751
NlaIII	CATG	8 cut(s)	92, 248, 260, 287, 713, 752, 955, 1027
NlaIV	GGNNCC	2 cut(s)	67, 1078
NmeAIII	GCCGAG	1 cut(s)	450
PagI	TCATGA	2 cut(s)	256, 748
PctI	GAATGC	1 cut(s)	487
PfeI	GAWTC	3 cut(s)	13, 659, 823
PkrI	GCNGC	7 cut(s)	139, 655, 885, 949, 1060, 1108, 1123
Ple19I	CGATCG	1 cut(s)	11
PleI	GAGTC	2 cut(s)	553, 862
PluTI	GGCGCC	1 cut(s)	69
PpsI	GAGTC	2 cut(s)	553, 862
Psp124BI	GAGCTC	1 cut(s)	236
Psp6I	CCWGG	1 cut(s)	722
PspFI	CCCAGC	1 cut(s)	363
PspGI	CCWGG	1 cut(s)	722
PspN4I	GGNNCC	2 cut(s)	67, 1078
PspPI	GGNCC	3 cut(s)	564, 611, 916
PstI	CTGCAG	1 cut(s)	1182
PsuI	RGATCY	1 cut(s)	344
PvuI	CGATCG	1 cut(s)	11
RsaI	GTAC	3 cut(s)	150, 282, 607
RsaNI	GTAC	3 cut(s)	149, 281, 606
RseI	CAYNNNNRTG	2 cut(s)	1022, 1028
SacI	GAGCTC	1 cut(s)	236
SatI	GCNGC	7 cut(s)	138, 654, 884, 948, 1059, 1107, 1122
Sau3AI	GATC	5 cut(s)	8, 181, 344, 745, 751
Sau96I	GGNCC	3 cut(s)	564, 611, 916
ScaI	AGTACT	1 cut(s)	607
SchI	GAGTC	2 cut(s)	554, 862
ScrFI	CCNGG	2 cut(s)	724, 1126
SduI	GDGCHC	2 cut(s)	236, 975
SfaNI	GCATC	3 cut(s)	140, 772, 1070
SfcI	CTRYAG	2 cut(s)	21, 1178
SfoI	GGCGCC	1 cut(s)	67
SinI	GGWCC	1 cut(s)	916
SmiMI	CAYNNNNRTG	2 cut(s)	1022, 1028
Sse9I	AATT	4 cut(s)	407, 559, 569, 579
SsiI	CCGC	3 cut(s)	138, 654, 947
SspDI	GGCGCC	1 cut(s)	65
SspI	AATATT	1 cut(s)	514
SspMI	CTAG	2 cut(s)	861, 1163
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	2 cut(s)	722, 1124
StyI	CCWWGG	1 cut(s)	951
TaaI	ACNGT	3 cut(s)	637, 813, 1021
TaqI	TCGA	6 cut(s)	7, 11, 184, 630, 754, 789
TasI	AATT	4 cut(s)	407, 559, 569, 579
TatI	WGTACW	1 cut(s)	605
TauI	GCSGC	3 cut(s)	140, 656, 950
TfiI	GAWTC	3 cut(s)	13, 659, 823
TscAI	CASTG	1 cut(s)	858
TseI	GCWGC	4 cut(s)	883, 1058, 1106, 1121
TspDTI	ATGAA	6 cut(s)	105, 344, 434, 494, 572, 666
TspRI	CASTG	1 cut(s)	858
VpaK11BI	GGWCC	1 cut(s)	916
XagI	CCTNNNNNAGG	1 cut(s)	118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	949
XspI	CTAG	2 cut(s)	861, 1163
ZrmI	AGTACT	1 cut(s)	607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.