Prupe.4G000400_v2.0.a1

Phosphoglycerate mutase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0010498
Physical Location & Seq
Forward (+)
86221 .. 89901
3681 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G000400.1

Sequence Viewer

Length: 729 bp
ATGAATGCAGTAACTCTCTGCACCCACAATATTAACTTTAATATTCAGCATCATTTCTCAGCGTCCGCGAATCCCAATTGGCCCAAATCCTCTTCAATCCGTCGCAGAAACCCTAACACGGCTACTAGGCCTTCATCTTTGGTAATCGAGACAGTGGAGGGCAAAGCTGTTTCAGATTCTGAACGAACTCCTCCATACGTTGCTCGTCGCCTCATTCTGCTTCGTCATGCTAACAGTTCCTGGGAAGACCCTTCGCTAAAAGATCATGATCGGCCACTGAGTGAAACAGGACAAGCCGATGCTGTCAAAGTCTCTCATAAGCTCCAACAGTTGGGTTGGATCCCTCAACTTATTTTATCTAGCAATGCAGTGCGAACCAGGGAAACTCTTACGATAATGCAGCAACAAGTGAGAGGCTTCTTGGAAGCTGAGGTCCATTATATTTCAAGCTTTTATTCCATAGCCGCCATGGATGGGCAGACAGCTGAGCACCTTCAACACGTTATCTGTAACTATTCAAGGGACGACATCCTCACTGTCATGTGCATGGGACATAATAGGGGTTGGGAGGAGGCAGCCTCAATGTTCACAGGTGCCTCCATAGAACTGAAGACTTGCAACGCTGCTTTGCTTGAAACTACTGGGAAATCTTGGGATGAGGCATTTGCTTTGGCAGGACTTGGGGGGTGGAAGCTGCAGGGTATTGTGAAACCAAGTACCAGCTTATAA

Protein Analysis

243

Amino Acids

26.85

Weight (kDa)

7.15

Isoelectric Point (pI)

51.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010498)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52155 AT3G52155 AT3G52155 AT3G52155
fragaria_vesca FvH4_3g00011
malus_domestica MD10G1342400.v1.1
prunus_persica Prupe.4G000400_v2.0.a1
pyrus_communis pycom10g29170
rosa_chinensis RchiOBHm_Chr5g0000011
rosa_laevigata RLG00000030832
rosa_multiflora Rmu_sc0007644.1_g000011
rosa_roxburghii Rroxscaffold_1G00076050
rosa_rugosa Rorug04G0380000 Rorug04G0380100 Rorug04G0380200 Rorug04G0380300
rosa_samantha Rh5AG000200 Rh5BG001400 Rh5CG000200 Rh5DG000200
rosa_wichuraiana Rw5G000050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 727
AccB1I GGYRCC 1 cut(s) 593
AccB7I CCANNNNNTGG 1 cut(s) 331
AccII CGCG 1 cut(s) 68
AciI CCGC 2 cut(s) 66, 465
AclWI GGATC 2 cut(s) 334, 347
AcoI YGGCCR 1 cut(s) 272
AcuI CTGAAG 1 cut(s) 629
AdeI CACNNNGTG 1 cut(s) 281
AfaI GTAC 1 cut(s) 718
AfiI CCNNNNNNNGG 3 cut(s) 118, 331, 474
AflIII ACRYGT 1 cut(s) 499
AgsI TTSAA 5 cut(s) 96, 447, 497, 519, 635
AjnI CCWGG 2 cut(s) 239, 377
AluBI AGCT 7 cut(s) 167, 322, 428, 450, 485, 694, 723
AluI AGCT 7 cut(s) 167, 322, 428, 450, 485, 694, 723
Alw21I GWGCWC 1 cut(s) 492
Alw26I GTCTC 2 cut(s) 143, 316
AlwI GGATC 2 cut(s) 334, 347
AlwNI CAGNNNCTG 2 cut(s) 179, 240
AoxI GGCC 3 cut(s) 80, 128, 272
ApeKI GCWGC 4 cut(s) 400, 575, 623, 694
AspS9I GGNCC 2 cut(s) 81, 433
AvaII GGWCC 1 cut(s) 433
BamHI GGATCC 1 cut(s) 339
BanI GGYRCC 1 cut(s) 593
BbsI GAAGAC 2 cut(s) 252, 617
Bbv12I GWGCWC 1 cut(s) 492
BbvCI CCTCAGC 1 cut(s) 429
BbvI GCAGC 4 cut(s) 412, 587, 610, 681
BccI CCATC 1 cut(s) 467
BceAI ACGGC 1 cut(s) 135
BciT130I CCWGG 2 cut(s) 241, 379
BcoDI GTCTC 2 cut(s) 143, 316
BfaI CTAG 2 cut(s) 126, 360
BfmI CTRYAG 1 cut(s) 695
BisI GCNGC 5 cut(s) 401, 465, 576, 624, 695
BlpI GCTNAGC 1 cut(s) 486
BlsI GCNGC 5 cut(s) 402, 466, 577, 625, 696
Bme1390I CCNGG 2 cut(s) 241, 379
Bme18I GGWCC 1 cut(s) 433
BmgT120I GGNCC 2 cut(s) 81, 433
BmiI GGNNCC 2 cut(s) 341, 595
BmrFI CCNGG 2 cut(s) 241, 379
BmrI ACTGGG 1 cut(s) 651
BmsI GCATC 2 cut(s) 58, 289
BmuI ACTGGG 1 cut(s) 651
BpiI GAAGAC 2 cut(s) 252, 617
BplI GAGNNNNNCTC 2 cut(s) 563, 595
Bpu10I CCTNAGC 1 cut(s) 429
Bpu1102I GCTNAGC 1 cut(s) 486
BsaBI GATNNNNATC 1 cut(s) 267
BsaJI CCNNGG 3 cut(s) 240, 378, 468
Bsc4I CCNNNNNNNGG 3 cut(s) 118, 331, 474
Bse1I ACTGG 1 cut(s) 646
Bse3DI GCAATG 1 cut(s) 370
Bse8I GATNNNNATC 1 cut(s) 267
BseBI CCWGG 2 cut(s) 241, 379
BseDI CCNNGG 3 cut(s) 240, 378, 468
BseGI GGATG 3 cut(s) 478, 528, 661
BseJI GATNNNNATC 1 cut(s) 267
BseLI CCNNNNNNNGG 3 cut(s) 118, 331, 474
BseMI GCAATG 1 cut(s) 370
BseMII CTCAG 4 cut(s) 72, 269, 420, 477
BseNI ACTGG 1 cut(s) 646
BseRI GAGGAG 2 cut(s) 180, 584
BseXI GCAGC 4 cut(s) 412, 587, 610, 681
BsgI GTGCAG 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 3 cut(s) 82, 130, 274
BshNI GGYRCC 1 cut(s) 593
BsiHKAI GWGCWC 1 cut(s) 492
BslFI GGGAC 2 cut(s) 536, 564
BslI CCNNNNNNNGG 3 cut(s) 118, 331, 474
BsmAI GTCTC 2 cut(s) 143, 316
BsmFI GGGAC 2 cut(s) 536, 564
BsmI GAATGC 1 cut(s) 10
BsnI GGCC 3 cut(s) 82, 130, 274
Bsp1286I GDGCHC 1 cut(s) 492
Bsp143I GATC 3 cut(s) 262, 268, 339
Bsp1720I GCTNAGC 1 cut(s) 486
Bsp19I CCATGG 1 cut(s) 468
BspACI CCGC 2 cut(s) 66, 465
BspANI GGCC 3 cut(s) 82, 130, 274
BspCNI CTCAG 4 cut(s) 71, 270, 421, 478
BspFNI CGCG 1 cut(s) 68
BspHI TCATGA 1 cut(s) 265
BspLI GGNNCC 2 cut(s) 341, 595
BspMAI CTGCAG 1 cut(s) 699
BspPI GGATC 2 cut(s) 334, 347
BspT107I GGYRCC 1 cut(s) 593
BsrDI GCAATG 1 cut(s) 370
BsrI ACTGG 1 cut(s) 646
BssECI CCNNGG 3 cut(s) 240, 378, 468
BssMI GATC 3 cut(s) 262, 268, 339
BssT1I CCWWGG 1 cut(s) 468
Bst2UI CCWGG 2 cut(s) 241, 379
Bst4CI ACNGT 4 cut(s) 154, 236, 330, 538
Bst6I CTCTTC 1 cut(s) 97
BstDEI CTNAG 4 cut(s) 58, 278, 429, 486
BstDSI CCRYGG 1 cut(s) 468
BstF5I GGATG 3 cut(s) 478, 528, 661
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 3 cut(s) 265, 271, 342
BstMAI GTCTC 2 cut(s) 143, 316
BstMBI GATC 3 cut(s) 262, 268, 339
BstNI CCWGG 2 cut(s) 241, 379
BstSCI CCNGG 2 cut(s) 239, 377
BstSFI CTRYAG 1 cut(s) 695
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 4 cut(s) 412, 587, 610, 681
BstV2I GAAGAC 2 cut(s) 252, 617
BstX2I RGATCY 1 cut(s) 339
BstYI RGATCY 1 cut(s) 339
BsuRI GGCC 3 cut(s) 82, 130, 274
BtgI CCRYGG 1 cut(s) 468
BtsCI GGATG 3 cut(s) 478, 528, 661
BtsI GCAGTG 1 cut(s) 375
BtsIMutI CAGTG 4 cut(s) 159, 275, 375, 534
CaiI CAGNNNCTG 2 cut(s) 179, 240
CciI TCATGA 1 cut(s) 265
Cfr13I GGNCC 2 cut(s) 81, 433
CseI GACGC 1 cut(s) 51
Csp6I GTAC 1 cut(s) 717
CviAII CATG 5 cut(s) 227, 266, 469, 541, 547
CviQI GTAC 1 cut(s) 717
DdeI CTNAG 4 cut(s) 58, 278, 429, 486
DpnI GATC 3 cut(s) 264, 270, 341
DpnII GATC 3 cut(s) 262, 268, 339
DraIII CACNNNGTG 1 cut(s) 281
EaeI YGGCCR 1 cut(s) 272
Eam1104I CTCTTC 1 cut(s) 97
EarI CTCTTC 1 cut(s) 97
Eco130I CCWWGG 1 cut(s) 468
Eco147I AGGCCT 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 433
Eco57I CTGAAG 1 cut(s) 629
EcoRII CCWGG 2 cut(s) 239, 377
EcoT14I CCWWGG 1 cut(s) 468
ErhI CCWWGG 1 cut(s) 468
FaeI CATG 5 cut(s) 230, 269, 472, 544, 550
FaqI GGGAC 2 cut(s) 536, 564
FatI CATG 5 cut(s) 226, 265, 468, 540, 546
Fnu4HI GCNGC 5 cut(s) 401, 465, 576, 624, 695
FokI GGATG 3 cut(s) 485, 515, 668
Fsp4HI GCNGC 5 cut(s) 401, 465, 576, 624, 695
FspBI CTAG 2 cut(s) 126, 360
GluI GCNGC 5 cut(s) 401, 465, 576, 624, 695
HaeIII GGCC 3 cut(s) 82, 130, 274
HgaI GACGC 1 cut(s) 51
Hin1II CATG 5 cut(s) 230, 269, 472, 544, 550
HindIII AAGCTT 1 cut(s) 448
HinfI GANTC 2 cut(s) 70, 176
Hpy166II GTNNAC 1 cut(s) 588
Hpy188I TCNGA 2 cut(s) 175, 181
Hpy188III TCNNGA 2 cut(s) 148, 266
Hpy8I GTNNAC 1 cut(s) 588
Hpy99I CGWCG 2 cut(s) 105, 210
HpyAV CCTTC 3 cut(s) 141, 261, 503
HpyCH4III ACNGT 4 cut(s) 154, 236, 330, 538
HpyCH4IV ACGT 2 cut(s) 198, 501
HpyCH4V TGCA 7 cut(s) 8, 21, 368, 400, 546, 618, 697
HpyF3I CTNAG 4 cut(s) 58, 278, 429, 486
HpySE526I ACGT 2 cut(s) 198, 501
Hsp92II CATG 5 cut(s) 230, 269, 472, 544, 550
Kzo9I GATC 3 cut(s) 262, 268, 339
LmnI GCTCC 1 cut(s) 327
LpnPI CCDG 9 cut(s) 226, 253, 273, 364, 391, 576, 627, 660, 683
Lsp1109I GCAGC 4 cut(s) 412, 587, 610, 681
LweI GCATC 2 cut(s) 58, 289
MaeI CTAG 2 cut(s) 126, 360
MaeII ACGT 2 cut(s) 198, 501
MaeIII GTNAC 2 cut(s) 10, 509
MalI GATC 3 cut(s) 264, 270, 341
MboI GATC 3 cut(s) 262, 268, 339
MboII GAAGA 3 cut(s) 84, 257, 622
MfeI CAATTG 1 cut(s) 76
MflI RGATCY 1 cut(s) 339
MhlI GDGCHC 1 cut(s) 492
MluCI AATT 1 cut(s) 76
MmeI TCCRAC 2 cut(s) 317, 349
MseI TTAA 2 cut(s) 33, 39
MslI CAYNNNNRTG 2 cut(s) 539, 545
MspA1I CMGCKG 1 cut(s) 485
MspR9I CCNGG 2 cut(s) 241, 379
MunI CAATTG 1 cut(s) 76
Mva1269I GAATGC 1 cut(s) 10
MvaI CCWGG 2 cut(s) 241, 379
MvnI CGCG 1 cut(s) 68
NcoI CCATGG 1 cut(s) 468
NdeII GATC 3 cut(s) 262, 268, 339
NlaIII CATG 5 cut(s) 230, 269, 472, 544, 550
NlaIV GGNNCC 2 cut(s) 341, 595
PagI TCATGA 1 cut(s) 265
PceI AGGCCT 1 cut(s) 130
PctI GAATGC 1 cut(s) 10
PfeI GAWTC 2 cut(s) 70, 176
PflMI CCANNNNNTGG 1 cut(s) 331
PkrI GCNGC 5 cut(s) 402, 466, 577, 625, 696
PsiI TTATAA 1 cut(s) 727
Psp6I CCWGG 2 cut(s) 239, 377
PspGI CCWGG 2 cut(s) 239, 377
PspN4I GGNNCC 2 cut(s) 341, 595
PspPI GGNCC 2 cut(s) 81, 433
PstI CTGCAG 1 cut(s) 699
PstNI CAGNNNCTG 2 cut(s) 179, 240
PsuI RGATCY 1 cut(s) 339
PvuII CAGCTG 1 cut(s) 485
RsaI GTAC 1 cut(s) 718
RsaNI GTAC 1 cut(s) 717
RseI CAYNNNNRTG 2 cut(s) 539, 545
SaqAI TTAA 2 cut(s) 33, 39
SatI GCNGC 5 cut(s) 401, 465, 576, 624, 695
Sau3AI GATC 3 cut(s) 262, 268, 339
Sau96I GGNCC 2 cut(s) 81, 433
ScrFI CCNGG 2 cut(s) 241, 379
SduI GDGCHC 1 cut(s) 492
SfaNI GCATC 2 cut(s) 58, 289
SfcI CTRYAG 1 cut(s) 695
SinI GGWCC 1 cut(s) 433
SmiMI CAYNNNNRTG 2 cut(s) 539, 545
Sse9I AATT 1 cut(s) 76
SseBI AGGCCT 1 cut(s) 130
SsiI CCGC 2 cut(s) 66, 465
SspI AATATT 2 cut(s) 31, 43
SspMI CTAG 2 cut(s) 126, 360
StuI AGGCCT 1 cut(s) 130
StyD4I CCNGG 2 cut(s) 239, 377
StyI CCWWGG 1 cut(s) 468
TaaI ACNGT 4 cut(s) 154, 236, 330, 538
TaiI ACGT 2 cut(s) 201, 504
TaqI TCGA 1 cut(s) 147
TasI AATT 1 cut(s) 76
TauI GCSGC 1 cut(s) 467
TfiI GAWTC 2 cut(s) 70, 176
Tru1I TTAA 2 cut(s) 33, 39
Tru9I TTAA 2 cut(s) 33, 39
TscAI CASTG 4 cut(s) 159, 282, 375, 541
TseI GCWGC 4 cut(s) 400, 575, 623, 694
TspDTI ATGAA 2 cut(s) 17, 123
TspGWI ACGGA 1 cut(s) 89
TspRI CASTG 4 cut(s) 159, 282, 375, 541
Van91I CCANNNNNTGG 1 cut(s) 331
VpaK11BI GGWCC 1 cut(s) 433
XcmI CCANNNNNNNNNTGG 1 cut(s) 466
XspI CTAG 2 cut(s) 126, 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.