AT3G53680

Contains the following InterPro domains Zinc finger, PHD-type, conserved site (InterPro IPR019786), Zinc finger, PHD-type (InterPro IPR001965), Zinc finger, FYVE PHD-type (InterPro IPR011011), Acyl-CoA N-acyltransferase (InterPro IPR016181), Zinc finger, PHD-finger (InterPro IPR019787)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0009150
Physical Location & Seq
Reverse (-)
19892525 .. 19897955
5431 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53680.2

Sequence Viewer

Length: 2526 bp
ATGGGAGAAGCAACAGTTTGTTTCGCGAAAGAGAATTCAGAAACGAAGAAGGATTTGAAGAGAGACCGTCTTTGTTTTGAACAAGATAATCTAGACGAAGAAGAGCTTTATTCCTCCAACAAGAGACAAACCAAGGAACCTTCAAATGATGACATGAAGTCGGAGATATCAAACCCAGTCCCGTCTCCGGTGGTGGATAACGCCTCTAGTTTTCGCGATATCACTAGTAATCCGGCTAAATCGAGTTCTGGTGACCGTGTCGGGTCTTGTTCTGGTTCCTATGAGACTATAACTGATGAGAAACACAGTGAATACTGTTCATCGCTAGCTAATAGTGATGCTGTACCGTCAAGTTTCGAAAGGGAGATTCCAAAGCATCTTAGCACAACTGGGATAACGAAAATCACATTTAAGCTCAGTAAACGAAATGAGGATTTCTGTGATTTGCCCATGATTCAAGAGCATACTTGGGAGGGTTATCCTTCCAATGTAGCTTCTTCAACTTTAGGTGTGAAAATGTTGAAGAAGATTGACTCTACCAACTTCCTATCTAATGTGAAGAAGCTATTGGGGACGGGGATTCTCGATGGTGCTCGGGTGAAGTACCTTTCAACCTCAGCTGCTAGAGAGCTTCAAGGGATAATCCACTCGGGTGGGTATTTGTGTGGCTGTACTGCGTGCGATTTCTCGAAAGTTCTAGGTGCATATGAGTTCGAGCGGCATGCTGGTGGAAAAACAAAACACCCTAATAATCACATATATCTGGAGAATGGACGGCCGGTTTATAACGTAATTCAAGAGCTGAGGATTGCTCCCCCTGACGTTTTGGAGGAGGTGATAAGGAAAGTGGCTGGTTCTGCTCTGAGCGAGGAGGGTTTTCAGGCTTGGAAAGGAAGTTTCCAGCAAGATAAGAATATGACTGAAGATGATAGCAACCATATCATGGATCATTCGTTTCAATCACTTGTTAGTTATCCTGGTTCTGGTTGGTCTCTTGATGAGAGTCAAAGCTCTACTCCATGTTTTCCAGAGGACAATTATTTTAGAGAGAAAATCTGTACAAAGGACACTCGACACGCACATAAGCCAAAAGCTAAGAAGCTTACCTCTCATATGTTTGGTATGGGTTGCCATAAGAAAGTTTCTGGAGGCGGTAAATGGAAGAGGGACAATGATTTACATCGGTTGCTGTTTTTGCCAAATGGGCTACCGGATGGGACTGAATTGGCTTACTATGTGAAATCACAGAAACTACTGCAGGGTTACAAGCAAGGAAGTGGTATAGTATGTAGCTGCTGCGACACAAAGATTAGTCCTTCACAATTCGAAGCACATGCTGGAATGGCTGGTAGACGACAACCTTATCGTCGAATCCACATATCTTCCGGATTGTCATTGCATGATATAGCTGTGTCATTGGCGGATGGGGGCCATGTCATTACAACTGGTGACAGTGATGACATGTGTTCTATTTGTGGCAATGGTGGAGATTTGCTACTTTGTGCTGGATGTCCTCAAGCATTTCATACAGCATGCTTGAAATTTCAATCAATGCCTGAAGGTACTTGGTACTGTTCAAGCTGCAATGATGGACCTACCTCTTGTAAAATAGCCACTGCTAGTGATCCCAATTTAAAACCCATAGTTATAAGACTGACAAGAGTTGTTAAAGCACCAGAAAGCGAAATTGGTGGTTGCGTGTTCTGCAGGTCGCATGATTTTAGCATTGGGAAATTTGATGATAGGACAGTTATTCTCTGTGACCAGTGCGAGAAAGAGTACCACGTCGGTTGTCTCAGGGAAAATGAGCTTTGTGATTTGAAAGGAATCCCCCAAGATAAATGGTTCTGCTGTAGTGACTGCAGCAGGATTCACAGGGTTCTTCAAAGCTCTGCTTCATGTGGGCCACAAACTATTCCCACGCTTTTGTTAGACACGATAAGCAGAAAGTACAGAGAAAAAGGAATATATATTGACAATGGAAATACTGTGGAGTGGAGGATGCTTAGTGGAAAAAGTCGATACCCAGAGCATCTACCCTTACTTTCACGAGCAGCTACTATTTTCAGGGAGTGTTTTGATCCCATTGTGGCAAAGTCTGGTCGTGATCTCATTCCTGTCATGGTCTATGGGAGAAACATATCTGGCCAGGAGTTTGGAGGAATGTACTGCTTGGTCCTGATGGTGAATTCCCTAGTTGTTTCTGCCGCGCTGCTTAGGATATTTGGTCAGAAAGTTGCAGAACTTCCTATTGTAGCTACAAGCCGAGAGTATCAGGGAAGGGGCTACTTTCAAGGGCTGTTTGCTTGCGTTGAGAATCTTCTTTCCTCTCTGAATGTTGAGAACTTGCTTCTCCCAGCAGCTGAAGAAGCTGAGTCTATCTGGACAAATAAATTTGGATTCACAAAGATGACTGAACATCGATTACAGAGGTACCAGAGAGAAGTGCAACTAACAATCTTCAAGGGAACATCGATGCTCGAGAAGAAAGTACCGAGTTTTTCAGAATCAACTTCAATCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD

Protein Analysis

841

Amino Acids

93.28

Weight (kDa)

6.78

Isoelectric Point (pI)

44.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 213 - 268 8.1e-13 Tify domain binding domain
TDBD PF16135 426 - 472 3.6e-12 Tify domain binding domain
PHD-1st_NSD PF23011 488 - 531 5.2e-09 Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD PF00628 491 - 530 7.6e-08 PHD-finger
IDM1_C PF23209 695 - 832 3.8e-51 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 786, 1649
Acc36I ACCTGC 1 cut(s) 1698
Acc65I GGTACC 1 cut(s) 2433
AccB1I GGYRCC 1 cut(s) 2433
AccB7I CCANNNNNTGG 1 cut(s) 943
AccBSI CCGCTC 1 cut(s) 718
AccI GTMKAC 1 cut(s) 1351
AccII CGCG 3 cut(s) 26, 216, 2210
AccIII TCCGGA 1 cut(s) 1385
AciI CCGC 4 cut(s) 718, 1152, 1421, 2208
AclWI GGATC 3 cut(s) 954, 1619, 2075
AcoI YGGCCR 2 cut(s) 776, 2146
AcsI RAATTY 5 cut(s) 34, 1541, 1733, 2188, 2393
AcuI CTGAAG 3 cut(s) 942, 1578, 2385
AfiI CCNNNNNNNGG 3 cut(s) 187, 943, 983
AflIII ACRYGT 1 cut(s) 1461
AhdI GACNNNNNGTC 1 cut(s) 157
AhlI ACTAGT 1 cut(s) 224
AjiI CACGTC 1 cut(s) 1786
AjnI CCWGG 2 cut(s) 976, 2148
AjuI GAANNNNNNNTTGG 4 cut(s) 551, 583, 1671, 1703
AleI CACNNNNGTG 1 cut(s) 651
Alw21I GWGCWC 1 cut(s) 595
Alw26I GTCTC 6 cut(s) 57, 118, 189, 278, 996, 1799
AlwI GGATC 3 cut(s) 954, 1619, 2075
AlwNI CAGNNNCTG 1 cut(s) 2363
Ama87I CYCGRG 3 cut(s) 594, 649, 2480
Aor13HI TCCGGA 1 cut(s) 1385
AoxI GGCC 4 cut(s) 776, 1429, 1904, 2146
ApeKI GCWGC 8 cut(s) 620, 1293, 1296, 1581, 1863, 2054, 2212, 2360
ApoI RAATTY 5 cut(s) 34, 1541, 1733, 2188, 2393
Asp718I GGTACC 1 cut(s) 2433
AspLEI GCGC 1 cut(s) 2212
AspS9I GGNCC 4 cut(s) 1429, 1592, 1904, 2176
AsuHPI GGTGA 5 cut(s) 263, 610, 847, 1460, 2197
AsuII TTCGAA 2 cut(s) 357, 1326
AsuNHI GCTAGC 1 cut(s) 325
AvaI CYCGRG 3 cut(s) 594, 649, 2480
AvaII GGWCC 2 cut(s) 1592, 2176
BaeI ACNNNNGTAYC 2 cut(s) 2417, 2450
BalI TGGCCA 1 cut(s) 2148
BanI GGYRCC 1 cut(s) 2433
BauI CACGAG 1 cut(s) 2049
Bbv12I GWGCWC 1 cut(s) 595
BbvCI CCTCAGC 2 cut(s) 616, 803
BbvI GCAGC 8 cut(s) 607, 1280, 1283, 1568, 1875, 2066, 2199, 2372
BccI CCATC 5 cut(s) 581, 1208, 1418, 1583, 2176
BceAI ACGGC 1 cut(s) 791
BcgI CGANNNNNNTGC 4 cut(s) 704, 738, 1316, 1350
BciT130I CCWGG 2 cut(s) 978, 2150
BcoDI GTCTC 6 cut(s) 57, 118, 189, 278, 996, 1799
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 8 cut(s) 92, 207, 225, 326, 624, 698, 1620, 2195
BfmI CTRYAG 4 cut(s) 1256, 1705, 1852, 1861
BfuAI ACCTGC 1 cut(s) 1698
BglI GCCNNNNNGGC 1 cut(s) 1204
Bme1390I CCNGG 2 cut(s) 978, 2150
Bme18I GGWCC 2 cut(s) 1592, 2176
BmeRI GACNNNNNGTC 1 cut(s) 157
BmeT110I CYCGRG 3 cut(s) 594, 649, 2480
BmgBI CACGTC 1 cut(s) 1786
BmgT120I GGNCC 4 cut(s) 1429, 1592, 1904, 2176
BmiI GGNNCC 4 cut(s) 138, 277, 1430, 2435
BmrFI CCNGG 2 cut(s) 978, 2150
BmrI ACTGGG 2 cut(s) 170, 399
BmsI GCATC 5 cut(s) 328, 385, 1992, 2041, 2466
BmtI GCTAGC 1 cut(s) 329
BmuI ACTGGG 2 cut(s) 170, 399
BplI GAGNNNNNCTC 2 cut(s) 796, 828
BpmI CTGGAG 2 cut(s) 785, 1167
Bpu10I CCTNAGC 3 cut(s) 616, 803, 2216
Bpu14I TTCGAA 2 cut(s) 357, 1326
BpuEI CTTGAG 1 cut(s) 1500
Bsa29I ATCGAT 2 cut(s) 2422, 2474
BsaBI GATNNNNATC 1 cut(s) 1179
BsaI GGTCTC 2 cut(s) 57, 996
BsaJI CCNNGG 1 cut(s) 132
BsaWI WCCGGW 3 cut(s) 187, 1210, 1385
Bsc4I CCNNNNNNNGG 3 cut(s) 187, 943, 983
Bse118I RCCGGY 1 cut(s) 778
Bse1I ACTGG 4 cut(s) 176, 394, 1450, 1765
Bse3DI GCAATG 3 cut(s) 1394, 1486, 1591
Bse8I GATNNNNATC 1 cut(s) 1179
BseAI TCCGGA 1 cut(s) 1385
BseBI CCWGG 2 cut(s) 978, 2150
BseCI ATCGAT 2 cut(s) 2422, 2474
BseDI CCNNGG 1 cut(s) 132
BseGI GGATG 4 cut(s) 1219, 1429, 1514, 2007
BseJI GATNNNNATC 1 cut(s) 1179
BseLI CCNNNNNNNGG 3 cut(s) 187, 943, 983
BseMI GCAATG 3 cut(s) 1394, 1486, 1591
BseMII CTCAG 6 cut(s) 430, 630, 794, 854, 1810, 2364
BseNI ACTGG 4 cut(s) 176, 394, 1450, 1765
BseRI GAGGAG 2 cut(s) 845, 884
BseX3I CGGCCG 1 cut(s) 776
BseXI GCAGC 8 cut(s) 607, 1280, 1283, 1568, 1875, 2066, 2199, 2372
BseYI CCCAGC 1 cut(s) 2356
Bsh1236I CGCG 3 cut(s) 26, 216, 2210
Bsh1285I CGRYCG 1 cut(s) 779
BshFI GGCC 4 cut(s) 778, 1431, 1906, 2148
BshNI GGYRCC 1 cut(s) 2433
BshVI ATCGAT 2 cut(s) 2422, 2474
BsiEI CGRYCG 1 cut(s) 779
BsiHKAI GWGCWC 1 cut(s) 595
BsiHKCI CYCGRG 3 cut(s) 594, 649, 2480
BsiSI CCGG 5 cut(s) 188, 233, 779, 1211, 1386
BslFI GGGAC 4 cut(s) 164, 586, 1181, 1231
BslI CCNNNNNNNGG 3 cut(s) 187, 943, 983
BsmAI GTCTC 6 cut(s) 57, 118, 189, 278, 996, 1799
BsmBI CGTCTC 1 cut(s) 189
BsmFI GGGAC 4 cut(s) 164, 586, 1181, 1231
BsnI GGCC 4 cut(s) 778, 1431, 1906, 2148
Bso31I GGTCTC 2 cut(s) 57, 996
BsoBI CYCGRG 3 cut(s) 594, 649, 2480
Bsp119I TTCGAA 2 cut(s) 357, 1326
Bsp1286I GDGCHC 1 cut(s) 595
Bsp13I TCCGGA 1 cut(s) 1385
Bsp1407I TGTACA 1 cut(s) 1058
Bsp143I GATC 4 cut(s) 946, 1624, 2080, 2107
Bsp68I TCGCGA 2 cut(s) 26, 216
BspACI CCGC 4 cut(s) 718, 1152, 1421, 2208
BspANI GGCC 4 cut(s) 778, 1431, 1906, 2148
BspCNI CTCAG 6 cut(s) 429, 629, 795, 855, 1809, 2365
BspDI ATCGAT 2 cut(s) 2422, 2474
BspEI TCCGGA 1 cut(s) 1385
BspFNI CGCG 3 cut(s) 26, 216, 2210
BspLI GGNNCC 4 cut(s) 138, 277, 1430, 2435
BspMAI CTGCAG 3 cut(s) 1260, 1709, 1865
BspMI ACCTGC 1 cut(s) 1698
BspOI GCTAGC 1 cut(s) 329
BspPI GGATC 3 cut(s) 954, 1619, 2075
BspQI GCTCTTC 1 cut(s) 96
BspT104I TTCGAA 2 cut(s) 357, 1326
BspT107I GGYRCC 1 cut(s) 2433
BspTNI GGTCTC 2 cut(s) 57, 996
BsrBI CCGCTC 1 cut(s) 718
BsrDI GCAATG 3 cut(s) 1394, 1486, 1591
BsrFI RCCGGY 1 cut(s) 778
BsrGI TGTACA 1 cut(s) 1058
BsrI ACTGG 4 cut(s) 176, 394, 1450, 1765
BssAI RCCGGY 1 cut(s) 778
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 4 cut(s) 946, 1624, 2080, 2107
BssSI CACGAG 1 cut(s) 2049
BssT1I CCWWGG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 2049
Bst2UI CCWGG 2 cut(s) 978, 2150
Bst6I CTCTTC 3 cut(s) 53, 96, 1157
BstAUI TGTACA 1 cut(s) 1058
BstBI TTCGAA 2 cut(s) 357, 1326
BstC8I GCNNGC 5 cut(s) 327, 679, 723, 1534, 2308
BstEII GGTNACC 1 cut(s) 251
BstF5I GGATG 4 cut(s) 1219, 1429, 1514, 2007
BstFNI CGCG 3 cut(s) 26, 216, 2210
BstHHI GCGC 1 cut(s) 2212
BstKTI GATC 4 cut(s) 949, 1627, 2083, 2110
BstMAI GTCTC 6 cut(s) 57, 118, 189, 278, 996, 1799
BstMBI GATC 4 cut(s) 946, 1624, 2080, 2107
BstMCI CGRYCG 1 cut(s) 779
BstMWI GCNNNNNNNGC 6 cut(s) 857, 1195, 1204, 1343, 1704, 2369
BstNI CCWGG 2 cut(s) 978, 2150
BstNSI RCATGY 4 cut(s) 725, 1337, 1465, 1536
BstPI GGTNACC 1 cut(s) 251
BstSCI CCNGG 2 cut(s) 976, 2148
BstSFI CTRYAG 4 cut(s) 1256, 1705, 1852, 1861
BstUI CGCG 3 cut(s) 26, 216, 2210
BstV1I GCAGC 8 cut(s) 607, 1280, 1283, 1568, 1875, 2066, 2199, 2372
BstXI CCANNNNNNTGG 2 cut(s) 653, 2156
BstZI CGGCCG 1 cut(s) 776
Bsu15I ATCGAT 2 cut(s) 2422, 2474
BsuRI GGCC 4 cut(s) 778, 1431, 1906, 2148
BsuTUI ATCGAT 2 cut(s) 2422, 2474
BtgZI GCGATG 1 cut(s) 306
BtrI CACGTC 1 cut(s) 1786
BtsCI GGATG 4 cut(s) 1219, 1429, 1514, 2007
BtsI GCAGTG 1 cut(s) 1614
BtsIMutI CAGTG 4 cut(s) 313, 1459, 1614, 1772
BtuMI TCGCGA 2 cut(s) 26, 216
BveI ACCTGC 1 cut(s) 1698
Cac8I GCNNGC 5 cut(s) 327, 679, 723, 1534, 2308
CaiI CAGNNNCTG 1 cut(s) 2363
CfoI GCGC 1 cut(s) 2212
Cfr10I RCCGGY 1 cut(s) 778
Cfr13I GGNCC 4 cut(s) 1429, 1592, 1904, 2176
ClaI ATCGAT 2 cut(s) 2422, 2474
CspCI CAANNNNNGTGG 2 cut(s) 1772, 1807
DpnI GATC 4 cut(s) 948, 1626, 2082, 2109
DpnII GATC 4 cut(s) 946, 1624, 2080, 2107
DraI TTTAAA 1 cut(s) 1635
DriI GACNNNNNGTC 1 cut(s) 157
EaeI YGGCCR 2 cut(s) 776, 2146
EagI CGGCCG 1 cut(s) 776
Eam1104I CTCTTC 3 cut(s) 53, 96, 1157
Eam1105I GACNNNNNGTC 1 cut(s) 157
EarI CTCTTC 3 cut(s) 53, 96, 1157
EciI GGCGGA 1 cut(s) 1436
EclXI CGGCCG 1 cut(s) 776
Eco130I CCWWGG 1 cut(s) 132
Eco31I GGTCTC 2 cut(s) 57, 996
Eco32I GATATC 2 cut(s) 168, 220
Eco47I GGWCC 2 cut(s) 1592, 2176
Eco52I CGGCCG 1 cut(s) 776
Eco57I CTGAAG 3 cut(s) 942, 1578, 2385
Eco88I CYCGRG 3 cut(s) 594, 649, 2480
Eco91I GGTNACC 1 cut(s) 251
EcoO65I GGTNACC 1 cut(s) 251
EcoRI GAATTC 2 cut(s) 34, 2188
EcoRII CCWGG 2 cut(s) 976, 2148
EcoRV GATATC 2 cut(s) 168, 220
EcoT14I CCWWGG 1 cut(s) 132
ErhI CCWWGG 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 189
FalI AAGNNNNNCTT 4 cut(s) 90, 122, 1879, 1911
FaqI GGGAC 4 cut(s) 164, 586, 1181, 1231
FauNDI CATATG 2 cut(s) 706, 1113
FblI GTMKAC 1 cut(s) 1351
FokI GGATG 4 cut(s) 1226, 1436, 1521, 2014
FspBI CTAG 8 cut(s) 92, 207, 225, 326, 624, 698, 1620, 2195
GlaI GCGC 1 cut(s) 2211
GsaI CCCAGC 1 cut(s) 2360
GsuI CTGGAG 2 cut(s) 785, 1167
HaeIII GGCC 4 cut(s) 778, 1431, 1906, 2148
HapII CCGG 5 cut(s) 188, 233, 779, 1211, 1386
HhaI GCGC 1 cut(s) 2212
Hin6I GCGC 1 cut(s) 2210
HinP1I GCGC 1 cut(s) 2210
HindIII AAGCTT 1 cut(s) 1100
HpaII CCGG 5 cut(s) 188, 233, 779, 1211, 1386
HphI GGTGA 5 cut(s) 263, 610, 847, 1460, 2197
Hpy166II GTNNAC 2 cut(s) 422, 1352
Hpy188I TCNGA 7 cut(s) 40, 163, 864, 2232, 2334, 2506, 2525
Hpy8I GTNNAC 2 cut(s) 422, 1352
Hpy99I CGWCG 2 cut(s) 1371, 1790
HpyAV CCTTC 6 cut(s) 43, 150, 492, 1326, 1553, 2274
HpyCH4IV ACGT 3 cut(s) 789, 822, 1785
HpyCH4V TGCA 8 cut(s) 704, 1258, 1399, 1584, 1707, 1863, 2240, 2449
HpyF10VI GCNNNNNNNGC 6 cut(s) 857, 1195, 1204, 1343, 1704, 2369
HpySE526I ACGT 3 cut(s) 789, 822, 1785
HspAI GCGC 1 cut(s) 2210
Kpn2I TCCGGA 1 cut(s) 1385
KpnI GGTACC 1 cut(s) 2437
Kzo9I GATC 4 cut(s) 946, 1624, 2080, 2107
LguI GCTCTTC 1 cut(s) 96
LmnI GCTCC 1 cut(s) 817
Lsp1109I GCAGC 8 cut(s) 607, 1280, 1283, 1568, 1875, 2066, 2199, 2372
LweI GCATC 5 cut(s) 328, 385, 1992, 2041, 2466
MaeI CTAG 8 cut(s) 92, 207, 225, 326, 624, 698, 1620, 2195
MaeII ACGT 3 cut(s) 789, 822, 1785
MaeIII GTNAC 5 cut(s) 251, 1262, 1448, 1760, 1856
MalI GATC 4 cut(s) 948, 1626, 2082, 2109
MbiI CCGCTC 1 cut(s) 718
MboI GATC 4 cut(s) 946, 1624, 2080, 2107
MhlI GDGCHC 1 cut(s) 595
MlsI TGGCCA 1 cut(s) 2148
MluNI TGGCCA 1 cut(s) 2148
MlyI GAGTC 3 cut(s) 527, 1012, 2384
MmeI TCCRAC 2 cut(s) 141, 141
Mox20I TGGCCA 1 cut(s) 2148
MroI TCCGGA 1 cut(s) 1385
MscI TGGCCA 1 cut(s) 2148
MseI TTAA 3 cut(s) 411, 1634, 1668
MslI CAYNNNNRTG 3 cut(s) 651, 726, 2408
Msp20I TGGCCA 1 cut(s) 2148
MspA1I CMGCKG 2 cut(s) 620, 2363
MspI CCGG 5 cut(s) 188, 233, 779, 1211, 1386
MspR9I CCNGG 2 cut(s) 978, 2150
MvaI CCWGG 2 cut(s) 978, 2150
MvnI CGCG 3 cut(s) 26, 216, 2210
MwoI GCNNNNNNNGC 6 cut(s) 857, 1195, 1204, 1343, 1704, 2369
NdeI CATATG 2 cut(s) 706, 1113
NdeII GATC 4 cut(s) 946, 1624, 2080, 2107
NheI GCTAGC 1 cut(s) 325
NlaIV GGNNCC 4 cut(s) 138, 277, 1430, 2435
NmeAIII GCCGAG 1 cut(s) 2291
NmuCI GTSAC 4 cut(s) 251, 1448, 1760, 1856
NruI TCGCGA 2 cut(s) 26, 216
NspI RCATGY 4 cut(s) 725, 1337, 1465, 1536
NspV TTCGAA 2 cut(s) 357, 1326
OliI CACNNNNGTG 1 cut(s) 651
PaeI GCATGC 2 cut(s) 725, 1536
PaeR7I CTCGAG 1 cut(s) 2480
PciI ACATGT 1 cut(s) 1461
PciSI GCTCTTC 1 cut(s) 96
PfeI GAWTC 9 cut(s) 367, 454, 580, 1371, 1827, 1870, 2317, 2400, 2507
PflFI GACNNNGTC 1 cut(s) 257
PflMI CCANNNNNTGG 1 cut(s) 943
PleI GAGTC 3 cut(s) 527, 1011, 2383
PpsI GAGTC 3 cut(s) 527, 1011, 2383
PscI ACATGT 1 cut(s) 1461
PsiI TTATAA 2 cut(s) 786, 1649
Psp6I CCWGG 2 cut(s) 976, 2148
PspEI GGTNACC 1 cut(s) 251
PspFI CCCAGC 1 cut(s) 2356
PspGI CCWGG 2 cut(s) 976, 2148
PspN4I GGNNCC 4 cut(s) 138, 277, 1430, 2435
PspPI GGNCC 4 cut(s) 1429, 1592, 1904, 2176
PsrI GAACNNNNNNTAC 2 cut(s) 2409, 2441
PstI CTGCAG 3 cut(s) 1260, 1709, 1865
PstNI CAGNNNCTG 1 cut(s) 2363
PsyI GACNNNGTC 1 cut(s) 257
PvuII CAGCTG 2 cut(s) 620, 2363
RruI TCGCGA 2 cut(s) 26, 216
RseI CAYNNNNRTG 3 cut(s) 651, 726, 2408
SapI GCTCTTC 1 cut(s) 96
SaqAI TTAA 3 cut(s) 411, 1634, 1668
Sau3AI GATC 4 cut(s) 946, 1624, 2080, 2107
Sau96I GGNCC 4 cut(s) 1429, 1592, 1904, 2176
SchI GAGTC 3 cut(s) 527, 1012, 2384
ScrFI CCNGG 2 cut(s) 978, 2150
SduI GDGCHC 1 cut(s) 595
SfaNI GCATC 5 cut(s) 328, 385, 1992, 2041, 2466
SfcI CTRYAG 4 cut(s) 1256, 1705, 1852, 1861
Sfr274I CTCGAG 1 cut(s) 2480
SfuI TTCGAA 2 cut(s) 357, 1326
SinI GGWCC 2 cut(s) 1592, 2176
SlaI CTCGAG 1 cut(s) 2480
SmiMI CAYNNNNRTG 3 cut(s) 651, 726, 2408
SmlI CTYRAG 2 cut(s) 1515, 2480
SmoI CTYRAG 2 cut(s) 1515, 2480
SpeI ACTAGT 1 cut(s) 224
SphI GCATGC 2 cut(s) 725, 1536
SsiI CCGC 4 cut(s) 718, 1152, 1421, 2208
SspMI CTAG 8 cut(s) 92, 207, 225, 326, 624, 698, 1620, 2195
StyD4I CCNGG 2 cut(s) 976, 2148
StyI CCWWGG 1 cut(s) 132
TaiI ACGT 3 cut(s) 792, 825, 1788
TatI WGTACW 4 cut(s) 671, 1058, 1950, 2166
TauI GCSGC 2 cut(s) 721, 2210
TfiI GAWTC 9 cut(s) 367, 454, 580, 1371, 1827, 1870, 2317, 2400, 2507
Tru1I TTAA 3 cut(s) 411, 1634, 1668
Tru9I TTAA 3 cut(s) 411, 1634, 1668
TscAI CASTG 4 cut(s) 313, 1459, 1621, 1772
TseFI GTSAC 4 cut(s) 251, 1448, 1760, 1856
TseI GCWGC 8 cut(s) 620, 1293, 1296, 1581, 1863, 2054, 2212, 2360
Tsp45I GTSAC 4 cut(s) 251, 1448, 1760, 1856
TspDTI ATGAA 4 cut(s) 170, 309, 1514, 1887
TspRI CASTG 4 cut(s) 313, 1459, 1621, 1772
Tth111I GACNNNGTC 1 cut(s) 257
Van91I CCANNNNNTGG 1 cut(s) 943
VpaK11BI GGWCC 2 cut(s) 1592, 2176
XapI RAATTY 5 cut(s) 34, 1541, 1733, 2188, 2393
XbaI TCTAGA 1 cut(s) 91
XceI RCATGY 4 cut(s) 725, 1337, 1465, 1536
XhoI CTCGAG 1 cut(s) 2480
XmiI GTMKAC 1 cut(s) 1351
XspI CTAG 8 cut(s) 92, 207, 225, 326, 624, 698, 1620, 2195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.