Rorug03G0086200

TPL-binding domain in jasmonate signalling

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0009150
Physical Location & Seq
Reverse (-)
6659220 .. 6660095
876 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0086200.1

Sequence Viewer

Length: 876 bp
ATGGCTAAATGTGATGTTTGCGACAAAGAGTATGATAAATTGATTGATGATGAATTTTGGGATCAAAGAGTGTGTGAGAAACATGAATCCGATGGGACTCCGAGATGTTATACTTGTTTCAAATTTCTTAAAGAAACAAAATATTTGGACCTTACTGATGGTCGAAAACTTTGCTCAGATTGTTCTTCCATTGCTATCATTGACCCAAAGGAATGCAAGCCCCTCATTCAATACGTGCACGAATTCTACAGAAGTTTAAACCTCAAAACGGATGAAGACATTCGTGTTTTATTGTTGGACAAGAATGCTATGCTCAAATTCAAATCTCCTGTTGATAACATGAGGGGTACAGTATGGTATAGTTTTGGCGGTTTGCGTGCTTTAGTGAGGATTAAAAAATGTTCAAAAATTGAAGGAAGTATTGAAGTGGAGAGAAAACTGGAGATGTTAAGACGTCCTCATAAGTTAACTGCGCGGCGAAGAAGTTCAGGCACTATAGAAGCATTGATAGTTTTGTTTGGGATGGCGAATGTAGACATGGGTGCAACAGTGGCACATGAGATGATGCATGCGTGGTTGTACACTGCTGGTGTTACGGGATTAGAAGAAAGGGTTGAAGAAGGTTTTTGTGAGTTAATGTCATACATGTGGATGGAGTGGTTTTGTTCCAGTCGTGTTGACTCCTTGTACAAGACCAATGAGCAAGTTCAGTATACAAGAAAATTGAAAGACCTTCTATCGAGTTCTATGGAATACAGTGAAGACGAAATTTATGGCCAAGGGTTTAGAGATGCTAGAACGGCTGTTAGCAAATTTGGCCTTAGAACTGTACTAGACCATATCGTGAAAAAGAGATGTCTCCCTTATGAAGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Jas PHD

Protein Analysis

291

Amino Acids

33.88

Weight (kDa)

6.98

Isoelectric Point (pI)

41.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DA1-like PF12315 86 - 282 7.3e-33 Protein DA1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 457
AccI GTMKAC 2 cut(s) 534, 713
AccII CGCG 1 cut(s) 475
AciI CCGC 2 cut(s) 369, 475
AclWI GGATC 1 cut(s) 69
AcoI YGGCCR 1 cut(s) 775
AcsI RAATTY 6 cut(s) 53, 122, 242, 317, 768, 812
AcyI GRCGYC 1 cut(s) 454
AfaI GTAC 4 cut(s) 349, 581, 689, 831
AfiI CCNNNNNNNGG 2 cut(s) 268, 869
AflIII ACRYGT 1 cut(s) 645
AgsI TTSAA 8 cut(s) 121, 230, 322, 405, 413, 425, 617, 727
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 863
Alw44I GTGCAC 1 cut(s) 236
AlwI GGATC 1 cut(s) 69
AoxI GGCC 2 cut(s) 775, 817
ApaLI GTGCAC 1 cut(s) 236
ApoI RAATTY 6 cut(s) 53, 122, 242, 317, 768, 812
Asp700I GAANNNNTTC 2 cut(s) 279, 484
AspLEI GCGC 1 cut(s) 475
AspS9I GGNCC 1 cut(s) 148
AvaII GGWCC 1 cut(s) 148
BaeGI GKGCMC 1 cut(s) 240
BalI TGGCCA 1 cut(s) 777
BbsI GAAGAC 2 cut(s) 282, 768
Bbv12I GWGCWC 1 cut(s) 240
BccI CCATC 4 cut(s) 86, 152, 517, 646
BceAI ACGGC 1 cut(s) 816
BcgI CGANNNNNNTGC 2 cut(s) 153, 187
BcoDI GTCTC 1 cut(s) 863
BfaI CTAG 2 cut(s) 795, 833
BfmI CTRYAG 2 cut(s) 247, 495
BisI GCNGC 1 cut(s) 476
BlsI GCNGC 1 cut(s) 477
Bme18I GGWCC 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 148
BmsI GCATC 2 cut(s) 555, 781
BpiI GAAGAC 2 cut(s) 282, 768
BpmI CTGGAG 1 cut(s) 461
BsaAI YACGTR 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 778
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 869
Bse1I ACTGG 2 cut(s) 444, 669
Bse3DI GCAATG 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 778
BseGI GGATG 3 cut(s) 277, 528, 657
BseLI CCNNNNNNNGG 2 cut(s) 268, 869
BseMI GCAATG 1 cut(s) 189
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 2 cut(s) 444, 669
BseSI GKGCMC 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 475
BshFI GGCC 2 cut(s) 777, 819
BsiHKAI GWGCWC 1 cut(s) 240
BslFI GGGAC 1 cut(s) 109
BslI CCNNNNNNNGG 2 cut(s) 268, 869
BsmAI GTCTC 1 cut(s) 863
BsmFI GGGAC 1 cut(s) 109
BsmI GAATGC 2 cut(s) 218, 310
BsnI GGCC 2 cut(s) 777, 819
Bsp1286I GDGCHC 1 cut(s) 240
Bsp1407I TGTACA 2 cut(s) 579, 687
Bsp143I GATC 1 cut(s) 61
BspACI CCGC 2 cut(s) 369, 475
BspANI GGCC 2 cut(s) 777, 819
BspCNI CTCAG 1 cut(s) 188
BspFNI CGCG 1 cut(s) 475
BspPI GGATC 1 cut(s) 69
BsrDI GCAATG 1 cut(s) 189
BsrGI TGTACA 2 cut(s) 579, 687
BsrI ACTGG 2 cut(s) 444, 669
BssECI CCNNGG 1 cut(s) 778
BssMI GATC 1 cut(s) 61
BssNAI GTATAC 1 cut(s) 714
BssNI GRCGYC 1 cut(s) 454
BssT1I CCWWGG 1 cut(s) 778
Bst1107I GTATAC 1 cut(s) 714
Bst4CI ACNGT 4 cut(s) 352, 550, 758, 829
BstACI GRCGYC 1 cut(s) 454
BstAUI TGTACA 2 cut(s) 579, 687
BstBAI YACGTR 1 cut(s) 235
BstC8I GCNNGC 3 cut(s) 218, 378, 570
BstDEI CTNAG 2 cut(s) 175, 821
BstENI CCTNNNNNAGG 1 cut(s) 867
BstF5I GGATG 3 cut(s) 277, 528, 657
BstFNI CGCG 1 cut(s) 475
BstHHI GCGC 1 cut(s) 475
BstKTI GATC 1 cut(s) 64
BstMAI GTCTC 1 cut(s) 863
BstMBI GATC 1 cut(s) 61
BstMWI GCNNNNNNNGC 3 cut(s) 551, 800, 816
BstNSI RCATGY 2 cut(s) 572, 649
BstSFI CTRYAG 2 cut(s) 247, 495
BstSLI GKGCMC 1 cut(s) 240
BstUI CGCG 1 cut(s) 475
BstV2I GAAGAC 2 cut(s) 282, 768
BstZ17I GTATAC 1 cut(s) 714
BsuRI GGCC 2 cut(s) 777, 819
BtsCI GGATG 3 cut(s) 277, 528, 657
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 3 cut(s) 555, 582, 763
Cac8I GCNNGC 3 cut(s) 218, 378, 570
CfoI GCGC 1 cut(s) 475
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 4 cut(s) 348, 580, 688, 830
CviAII CATG 6 cut(s) 83, 340, 538, 557, 569, 646
CviJI RGCY 5 cut(s) 5, 220, 777, 803, 819
CviKI_1 RGCY 5 cut(s) 5, 220, 777, 803, 819
CviQI GTAC 4 cut(s) 348, 580, 688, 830
DdeI CTNAG 2 cut(s) 175, 821
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
DraI TTTAAA 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 775
Eco130I CCWWGG 1 cut(s) 778
Eco47I GGWCC 1 cut(s) 148
EcoNI CCTNNNNNAGG 1 cut(s) 867
EcoRI GAATTC 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 778
EcoT22I ATGCAT 1 cut(s) 570
ErhI CCWWGG 1 cut(s) 778
FaeI CATG 6 cut(s) 86, 343, 541, 560, 572, 649
FaqI GGGAC 1 cut(s) 109
FatI CATG 6 cut(s) 82, 339, 537, 556, 568, 645
FblI GTMKAC 2 cut(s) 534, 713
Fnu4HI GCNGC 1 cut(s) 476
FokI GGATG 3 cut(s) 284, 535, 664
Fsp4HI GCNGC 1 cut(s) 476
FspBI CTAG 2 cut(s) 795, 833
GlaI GCGC 1 cut(s) 474
GluI GCNGC 1 cut(s) 476
GsuI CTGGAG 1 cut(s) 461
HaeIII GGCC 2 cut(s) 777, 819
HhaI GCGC 1 cut(s) 475
Hin1I GRCGYC 1 cut(s) 454
Hin1II CATG 6 cut(s) 86, 343, 541, 560, 572, 649
Hin6I GCGC 1 cut(s) 473
HinP1I GCGC 1 cut(s) 473
HincII GTYRAC 2 cut(s) 468, 679
HindII GTYRAC 2 cut(s) 468, 679
HinfI GANTC 3 cut(s) 86, 97, 680
HpaI GTTAAC 1 cut(s) 468
Hpy166II GTNNAC 6 cut(s) 238, 468, 535, 582, 679, 714
Hpy188I TCNGA 3 cut(s) 91, 102, 178
Hpy188III TCNNGA 1 cut(s) 844
Hpy8I GTNNAC 6 cut(s) 238, 468, 535, 582, 679, 714
HpyAV CCTTC 4 cut(s) 407, 614, 743, 863
HpyCH4III ACNGT 4 cut(s) 352, 550, 758, 829
HpyCH4IV ACGT 2 cut(s) 234, 454
HpyCH4V TGCA 4 cut(s) 216, 238, 545, 568
HpyF10VI GCNNNNNNNGC 3 cut(s) 551, 800, 816
HpyF3I CTNAG 2 cut(s) 175, 821
HpySE526I ACGT 2 cut(s) 234, 454
Hsp92I GRCGYC 1 cut(s) 454
Hsp92II CATG 6 cut(s) 86, 343, 541, 560, 572, 649
HspAI GCGC 1 cut(s) 473
KspAI GTTAAC 1 cut(s) 468
Kzo9I GATC 1 cut(s) 61
LpnPI CCDG 5 cut(s) 342, 425, 474, 573, 682
LweI GCATC 2 cut(s) 555, 781
MaeI CTAG 2 cut(s) 795, 833
MaeII ACGT 2 cut(s) 234, 454
MaeIII GTNAC 1 cut(s) 592
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MboII GAAGA 6 cut(s) 177, 287, 492, 617, 629, 773
MhlI GDGCHC 1 cut(s) 240
MlsI TGGCCA 1 cut(s) 777
MluCI AATT 9 cut(s) 38, 53, 122, 242, 317, 408, 722, 768, 812
MluNI TGGCCA 1 cut(s) 777
MlyI GAGTC 2 cut(s) 91, 674
MmeI TCCRAC 1 cut(s) 276
MnlI CCTC 5 cut(s) 233, 272, 336, 381, 468
Mox20I TGGCCA 1 cut(s) 777
Mph1103I ATGCAT 1 cut(s) 570
MroXI GAANNNNTTC 2 cut(s) 279, 484
MscI TGGCCA 1 cut(s) 777
MseI TTAA 7 cut(s) 129, 257, 393, 449, 467, 635, 874
MslI CAYNNNNRTG 2 cut(s) 646, 650
Msp20I TGGCCA 1 cut(s) 777
MssI GTTTAAAC 1 cut(s) 258
Mva1269I GAATGC 2 cut(s) 218, 310
MvnI CGCG 1 cut(s) 475
MwoI GCNNNNNNNGC 3 cut(s) 551, 800, 816
NdeII GATC 1 cut(s) 61
NlaIII CATG 6 cut(s) 86, 343, 541, 560, 572, 649
NsiI ATGCAT 1 cut(s) 570
NspI RCATGY 2 cut(s) 572, 649
PaeI GCATGC 1 cut(s) 572
PciI ACATGT 1 cut(s) 645
PctI GAATGC 2 cut(s) 218, 310
PdmI GAANNNNTTC 2 cut(s) 279, 484
PfeI GAWTC 1 cut(s) 86
PkrI GCNGC 1 cut(s) 477
PleI GAGTC 2 cut(s) 91, 674
PmeI GTTTAAAC 1 cut(s) 258
PpsI GAGTC 2 cut(s) 91, 674
Ppu21I YACGTR 1 cut(s) 235
PscI ACATGT 1 cut(s) 645
PspPI GGNCC 1 cut(s) 148
RsaI GTAC 4 cut(s) 349, 581, 689, 831
RsaNI GTAC 4 cut(s) 348, 580, 688, 830
RseI CAYNNNNRTG 2 cut(s) 646, 650
SaqAI TTAA 7 cut(s) 129, 257, 393, 449, 467, 635, 874
SatI GCNGC 1 cut(s) 476
Sau3AI GATC 1 cut(s) 61
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 2 cut(s) 91, 674
SduI GDGCHC 1 cut(s) 240
SetI ASST 7 cut(s) 153, 237, 264, 457, 625, 735, 874
SfaNI GCATC 2 cut(s) 555, 781
SfcI CTRYAG 2 cut(s) 247, 495
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 2 cut(s) 646, 650
SphI GCATGC 1 cut(s) 572
Sse9I AATT 9 cut(s) 38, 53, 122, 242, 317, 408, 722, 768, 812
SsiI CCGC 2 cut(s) 369, 475
SspI AATATT 1 cut(s) 143
SspMI CTAG 2 cut(s) 795, 833
StyI CCWWGG 1 cut(s) 778
TaaI ACNGT 4 cut(s) 352, 550, 758, 829
TaiI ACGT 2 cut(s) 237, 457
TaqI TCGA 2 cut(s) 163, 740
TasI AATT 9 cut(s) 38, 53, 122, 242, 317, 408, 722, 768, 812
TatI WGTACW 3 cut(s) 579, 687, 829
TauI GCSGC 1 cut(s) 478
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 7 cut(s) 129, 257, 393, 449, 467, 635, 874
Tru9I TTAA 7 cut(s) 129, 257, 393, 449, 467, 635, 874
TscAI CASTG 3 cut(s) 555, 589, 763
TspDTI ATGAA 3 cut(s) 66, 99, 288
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 3 cut(s) 555, 589, 763
VneI GTGCAC 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 148
XagI CCTNNNNNAGG 1 cut(s) 867
XapI RAATTY 6 cut(s) 53, 122, 242, 317, 768, 812
XceI RCATGY 2 cut(s) 572, 649
XmiI GTMKAC 2 cut(s) 534, 713
XmnI GAANNNNTTC 2 cut(s) 279, 484
XspI CTAG 2 cut(s) 795, 833
ZraI GACGTC 1 cut(s) 455
Zsp2I ATGCAT 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.