TPL-binding domain in jasmonate signalling
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G37520 AT3G53680 AT3G53680 |
| fragaria_vesca | FvH4_6g14290 FvH4_6g14290 FvH4_6g14290 |
| malus_domestica | MD04G1122100.v1.1 MD12G1138700.v1.1 |
| prunus_persica | Prupe.6G250600_v2.0.a1 |
| pyrus_communis | pycom04g11070 pycom12g13270 |
| rosa_chinensis | RchiOBHm_Chr3g0467251 |
| rosa_laevigata | RLG00000024514 |
| rosa_multiflora | Rmu_sc0019565.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00413780 |
| rosa_rugosa | Rorug03G0086100 Rorug03G0086200 |
| rosa_samantha | Rh3AG134500 Rh3BG155800 Rh3CG155400 Rh3DG156600 |
| rosa_wichuraiana | Rw3G012730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 133 |
| AflIII | ACRYGT | 1 cut(s) | 299 |
| AgsI | TTSAA | 1 cut(s) | 440 |
| AjnI | CCWGG | 1 cut(s) | 352 |
| AluBI | AGCT | 1 cut(s) | 349 |
| AluI | AGCT | 1 cut(s) | 349 |
| ApeKI | GCWGC | 1 cut(s) | 269 |
| AsuHPI | GGTGA | 1 cut(s) | 98 |
| BbvI | GCAGC | 1 cut(s) | 256 |
| BccI | CCATC | 2 cut(s) | 310, 320 |
| BciT130I | CCWGG | 1 cut(s) | 354 |
| BglII | AGATCT | 1 cut(s) | 189 |
| BisI | GCNGC | 1 cut(s) | 270 |
| BlsI | GCNGC | 1 cut(s) | 271 |
| Bme1390I | CCNGG | 1 cut(s) | 354 |
| BmrFI | CCNGG | 1 cut(s) | 354 |
| BmrI | ACTGGG | 1 cut(s) | 114 |
| BmsI | GCATC | 3 cut(s) | 274, 420, 452 |
| BmuI | ACTGGG | 1 cut(s) | 114 |
| BsaJI | CCNNGG | 2 cut(s) | 352, 353 |
| Bse1I | ACTGG | 1 cut(s) | 109 |
| Bse3DI | GCAATG | 2 cut(s) | 406, 426 |
| BseBI | CCWGG | 1 cut(s) | 354 |
| BseDI | CCNNGG | 2 cut(s) | 352, 353 |
| BseGI | GGATG | 5 cut(s) | 183, 289, 321, 364, 411 |
| BseMI | GCAATG | 2 cut(s) | 406, 426 |
| BseMII | CTCAG | 1 cut(s) | 32 |
| BseNI | ACTGG | 1 cut(s) | 109 |
| BseXI | GCAGC | 1 cut(s) | 256 |
| Bsp143I | GATC | 1 cut(s) | 189 |
| BspCNI | CTCAG | 1 cut(s) | 33 |
| BsrDI | GCAATG | 2 cut(s) | 406, 426 |
| BsrI | ACTGG | 1 cut(s) | 109 |
| BssECI | CCNNGG | 2 cut(s) | 352, 353 |
| BssMI | GATC | 1 cut(s) | 189 |
| Bst2UI | CCWGG | 1 cut(s) | 354 |
| Bst6I | CTCTTC | 1 cut(s) | 167 |
| BstC8I | GCNNGC | 2 cut(s) | 261, 385 |
| BstDEI | CTNAG | 2 cut(s) | 41, 49 |
| BstF5I | GGATG | 5 cut(s) | 183, 289, 321, 364, 411 |
| BstKTI | GATC | 1 cut(s) | 192 |
| BstMBI | GATC | 1 cut(s) | 189 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 269 |
| BstNI | CCWGG | 1 cut(s) | 354 |
| BstNSI | RCATGY | 3 cut(s) | 263, 303, 387 |
| BstSCI | CCNGG | 1 cut(s) | 352 |
| BstV1I | GCAGC | 1 cut(s) | 256 |
| BstX2I | RGATCY | 1 cut(s) | 189 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 375 |
| BstYI | RGATCY | 1 cut(s) | 189 |
| BtsCI | GGATG | 5 cut(s) | 183, 289, 321, 364, 411 |
| Cac8I | GCNNGC | 2 cut(s) | 261, 385 |
| CviAII | CATG | 6 cut(s) | 260, 273, 279, 300, 384, 392 |
| CviJI | RGCY | 3 cut(s) | 40, 147, 349 |
| CviKI_1 | RGCY | 3 cut(s) | 40, 147, 349 |
| DdeI | CTNAG | 2 cut(s) | 41, 49 |
| DpnI | GATC | 1 cut(s) | 191 |
| DpnII | GATC | 1 cut(s) | 189 |
| Eam1104I | CTCTTC | 1 cut(s) | 167 |
| EarI | CTCTTC | 1 cut(s) | 167 |
| Eco57I | CTGAAG | 1 cut(s) | 133 |
| EcoRII | CCWGG | 1 cut(s) | 352 |
| EcoT22I | ATGCAT | 1 cut(s) | 397 |
| FaeI | CATG | 6 cut(s) | 263, 276, 282, 303, 387, 395 |
| FaiI | YATR | 7 cut(s) | 245, 261, 274, 280, 301, 385, 393 |
| FatI | CATG | 6 cut(s) | 259, 272, 278, 299, 383, 391 |
| Fnu4HI | GCNGC | 1 cut(s) | 270 |
| FokI | GGATG | 5 cut(s) | 190, 296, 328, 371, 398 |
| Fsp4HI | GCNGC | 1 cut(s) | 270 |
| GluI | GCNGC | 1 cut(s) | 270 |
| Hin1II | CATG | 6 cut(s) | 263, 276, 282, 303, 387, 395 |
| HinfI | GANTC | 3 cut(s) | 45, 94, 129 |
| HphI | GGTGA | 1 cut(s) | 98 |
| Hpy166II | GTNNAC | 1 cut(s) | 66 |
| Hpy188I | TCNGA | 2 cut(s) | 83, 128 |
| Hpy188III | TCNNGA | 3 cut(s) | 167, 187, 338 |
| Hpy8I | GTNNAC | 1 cut(s) | 66 |
| HpyAV | CCTTC | 1 cut(s) | 83 |
| HpyCH4V | TGCA | 8 cut(s) | 28, 160, 272, 287, 383, 387, 395, 411 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 269 |
| HpyF3I | CTNAG | 2 cut(s) | 41, 49 |
| Hsp92II | CATG | 6 cut(s) | 263, 276, 282, 303, 387, 395 |
| Kzo9I | GATC | 1 cut(s) | 189 |
| LmnI | GCTCC | 1 cut(s) | 354 |
| Lsp1109I | GCAGC | 1 cut(s) | 256 |
| LweI | GCATC | 3 cut(s) | 274, 420, 452 |
| MalI | GATC | 1 cut(s) | 191 |
| MboI | GATC | 1 cut(s) | 189 |
| MboII | GAAGA | 3 cut(s) | 184, 395, 428 |
| MflI | RGATCY | 1 cut(s) | 189 |
| MluCI | AATT | 2 cut(s) | 69, 372 |
| MlyI | GAGTC | 1 cut(s) | 138 |
| MnlI | CCTC | 2 cut(s) | 77, 168 |
| Mph1103I | ATGCAT | 1 cut(s) | 397 |
| MseI | TTAA | 1 cut(s) | 23 |
| MslI | CAYNNNNRTG | 1 cut(s) | 277 |
| MspR9I | CCNGG | 1 cut(s) | 354 |
| MvaI | CCWGG | 1 cut(s) | 354 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 269 |
| NdeII | GATC | 1 cut(s) | 189 |
| NlaIII | CATG | 6 cut(s) | 263, 276, 282, 303, 387, 395 |
| NsiI | ATGCAT | 1 cut(s) | 397 |
| NspI | RCATGY | 3 cut(s) | 263, 303, 387 |
| PaeI | GCATGC | 2 cut(s) | 263, 387 |
| PasI | CCCWGGG | 1 cut(s) | 353 |
| PciI | ACATGT | 1 cut(s) | 299 |
| PfeI | GAWTC | 2 cut(s) | 45, 94 |
| PkrI | GCNGC | 1 cut(s) | 271 |
| PleI | GAGTC | 1 cut(s) | 137 |
| PpsI | GAGTC | 1 cut(s) | 137 |
| PscI | ACATGT | 1 cut(s) | 299 |
| Psp6I | CCWGG | 1 cut(s) | 352 |
| PspGI | CCWGG | 1 cut(s) | 352 |
| PsuI | RGATCY | 1 cut(s) | 189 |
| RseI | CAYNNNNRTG | 1 cut(s) | 277 |
| SaqAI | TTAA | 1 cut(s) | 23 |
| SatI | GCNGC | 1 cut(s) | 270 |
| Sau3AI | GATC | 1 cut(s) | 189 |
| SchI | GAGTC | 1 cut(s) | 138 |
| ScrFI | CCNGG | 1 cut(s) | 354 |
| SetI | ASST | 2 cut(s) | 88, 351 |
| SfaNI | GCATC | 3 cut(s) | 274, 420, 452 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 277 |
| SphI | GCATGC | 2 cut(s) | 263, 387 |
| Sse9I | AATT | 2 cut(s) | 69, 372 |
| StyD4I | CCNGG | 1 cut(s) | 352 |
| TasI | AATT | 2 cut(s) | 69, 372 |
| TfiI | GAWTC | 2 cut(s) | 45, 94 |
| Tru1I | TTAA | 1 cut(s) | 23 |
| Tru9I | TTAA | 1 cut(s) | 23 |
| TseI | GCWGC | 1 cut(s) | 269 |
| TspDTI | ATGAA | 7 cut(s) | 17, 27, 194, 260, 389, 395, 415 |
| XceI | RCATGY | 3 cut(s) | 263, 303, 387 |
| Zsp2I | ATGCAT | 1 cut(s) | 397 |