TPL-binding domain in jasmonate signalling
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G37520 AT3G53680 AT3G53680 |
| fragaria_vesca | FvH4_6g14290 FvH4_6g14290 FvH4_6g14290 |
| malus_domestica | MD04G1122100.v1.1 MD12G1138700.v1.1 |
| prunus_persica | Prupe.6G250600_v2.0.a1 |
| pyrus_communis | pycom04g11070 pycom12g13270 |
| rosa_chinensis | RchiOBHm_Chr3g0467251 |
| rosa_laevigata | RLG00000024514 |
| rosa_multiflora | Rmu_sc0019565.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00413780 |
| rosa_rugosa | Rorug03G0086100 Rorug03G0086200 |
| rosa_samantha | Rh3AG134500 Rh3BG155800 Rh3CG155400 Rh3DG156600 |
| rosa_wichuraiana | Rw3G012730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1781 |
| AatII | GACGTC | 1 cut(s) | 2504 |
| Acc36I | ACCTGC | 1 cut(s) | 250 |
| AccI | GTMKAC | 1 cut(s) | 704 |
| AccII | CGCG | 1 cut(s) | 2390 |
| AccIII | TCCGGA | 1 cut(s) | 2056 |
| AciI | CCGC | 9 cut(s) | 111, 245, 749, 783, 798, 947, 1272, 2388, 2390 |
| AclWI | GGATC | 1 cut(s) | 2137 |
| AcoI | YGGCCR | 2 cut(s) | 1431, 1438 |
| AcsI | RAATTY | 4 cut(s) | 304, 411, 1654, 1915 |
| AcuI | CTGAAG | 4 cut(s) | 98, 956, 1074, 1179 |
| AcyI | GRCGYC | 3 cut(s) | 861, 1366, 2501 |
| AfaI | GTAC | 6 cut(s) | 340, 559, 828, 1142, 1923, 2198 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 244, 2080, 2152 |
| AgeI | ACCGGT | 1 cut(s) | 1194 |
| AgsI | TTSAA | 8 cut(s) | 457, 545, 684, 1340, 1619, 1653, 1696, 2024 |
| AhlI | ACTAGT | 1 cut(s) | 2291 |
| AjnI | CCWGG | 2 cut(s) | 821, 1621 |
| Alw21I | GWGCWC | 2 cut(s) | 90, 727 |
| Alw26I | GTCTC | 4 cut(s) | 101, 365, 2246, 2439 |
| AlwI | GGATC | 1 cut(s) | 2137 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 2129 |
| Ama87I | CYCGRG | 2 cut(s) | 64, 726 |
| Aor13HI | TCCGGA | 1 cut(s) | 2056 |
| AoxI | GGCC | 2 cut(s) | 1431, 1438 |
| ApoI | RAATTY | 4 cut(s) | 304, 411, 1654, 1915 |
| AsiGI | ACCGGT | 1 cut(s) | 1194 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1805, 2170 |
| AspLEI | GCGC | 3 cut(s) | 602, 631, 2052 |
| AsuC2I | CCSGG | 2 cut(s) | 531, 1013 |
| AsuHPI | GGTGA | 6 cut(s) | 290, 392, 811, 1595, 1940, 2533 |
| AvaI | CYCGRG | 2 cut(s) | 64, 726 |
| AxyI | CCTNAGG | 1 cut(s) | 2246 |
| BalI | TGGCCA | 1 cut(s) | 1433 |
| BanII | GRGCYC | 2 cut(s) | 531, 727 |
| BauI | CACGAG | 4 cut(s) | 89, 396, 521, 1536 |
| BbsI | GAAGAC | 3 cut(s) | 944, 1669, 1684 |
| Bbv12I | GWGCWC | 2 cut(s) | 90, 727 |
| BbvCI | CCTCAGC | 1 cut(s) | 2394 |
| BccI | CCATC | 6 cut(s) | 32, 713, 1037, 1220, 1460, 1520 |
| BceAI | ACGGC | 1 cut(s) | 1453 |
| BciT130I | CCWGG | 2 cut(s) | 823, 1623 |
| BclI | TGATCA | 1 cut(s) | 1789 |
| BcnI | CCSGG | 2 cut(s) | 531, 1013 |
| BcoDI | GTCTC | 4 cut(s) | 101, 365, 2246, 2439 |
| BcuI | ACTAGT | 1 cut(s) | 2291 |
| BfaI | CTAG | 4 cut(s) | 234, 555, 2292, 2510 |
| BfoI | RGCGCY | 1 cut(s) | 2053 |
| BfuAI | ACCTGC | 1 cut(s) | 250 |
| BlpI | GCTNAGC | 2 cut(s) | 950, 2271 |
| BmcAI | AGTACT | 1 cut(s) | 1923 |
| Bme1390I | CCNGG | 4 cut(s) | 531, 823, 1013, 1623 |
| BmeT110I | CYCGRG | 2 cut(s) | 64, 726 |
| BmiI | GGNNCC | 4 cut(s) | 214, 528, 1575, 1739 |
| BmrFI | CCNGG | 4 cut(s) | 531, 823, 1013, 1623 |
| BmsI | GCATC | 4 cut(s) | 540, 883, 930, 1520 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1688 |
| BpiI | GAAGAC | 3 cut(s) | 944, 1669, 1684 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 197, 229 |
| Bpu10I | CCTNAGC | 2 cut(s) | 417, 2394 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 950, 2271 |
| BpuEI | CTTGAG | 2 cut(s) | 343, 1563 |
| BpuMI | CCSGG | 2 cut(s) | 531, 1013 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1185 |
| BsaHI | GRCGYC | 3 cut(s) | 861, 1366, 2501 |
| BsaI | GGTCTC | 1 cut(s) | 2246 |
| BsaJI | CCNNGG | 3 cut(s) | 822, 1568, 2388 |
| BsaWI | WCCGGW | 2 cut(s) | 1194, 2056 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 714, 744, 2367, 2397 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 244, 2080, 2152 |
| Bse118I | RCCGGY | 1 cut(s) | 1194 |
| Bse1I | ACTGG | 4 cut(s) | 426, 613, 712, 2382 |
| Bse21I | CCTNAGG | 1 cut(s) | 2246 |
| Bse3DI | GCAATG | 3 cut(s) | 334, 602, 1477 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1185 |
| BseAI | TCCGGA | 1 cut(s) | 2056 |
| BseBI | CCWGG | 2 cut(s) | 823, 1623 |
| BseDI | CCNNGG | 3 cut(s) | 822, 1568, 2388 |
| BseGI | GGATG | 5 cut(s) | 619, 874, 967, 1096, 1535 |
| BseJI | GATNNNNATC | 1 cut(s) | 1185 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 244, 2080, 2152 |
| BseMI | GCAATG | 3 cut(s) | 334, 602, 1477 |
| BseMII | CTCAG | 5 cut(s) | 844, 1695, 2262, 2385, 2394 |
| BseNI | ACTGG | 4 cut(s) | 426, 613, 712, 2382 |
| BseRI | GAGGAG | 1 cut(s) | 539 |
| BseYI | CCCAGC | 1 cut(s) | 1640 |
| BsgI | GTGCAG | 3 cut(s) | 333, 1175, 2498 |
| Bsh1236I | CGCG | 1 cut(s) | 2390 |
| BshFI | GGCC | 2 cut(s) | 1433, 1440 |
| BshTI | ACCGGT | 1 cut(s) | 1194 |
| BsiHKAI | GWGCWC | 2 cut(s) | 90, 727 |
| BsiHKCI | CYCGRG | 2 cut(s) | 64, 726 |
| BsiSI | CCGG | 4 cut(s) | 531, 1012, 1195, 2057 |
| BslFI | GGGAC | 1 cut(s) | 2512 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 244, 2080, 2152 |
| BsmAI | GTCTC | 4 cut(s) | 101, 365, 2246, 2439 |
| BsmBI | CGTCTC | 2 cut(s) | 365, 2439 |
| BsmFI | GGGAC | 1 cut(s) | 2512 |
| BsmI | GAATGC | 1 cut(s) | 151 |
| BsnI | GGCC | 2 cut(s) | 1433, 1440 |
| Bso31I | GGTCTC | 1 cut(s) | 2246 |
| BsoBI | CYCGRG | 2 cut(s) | 64, 726 |
| Bsp1286I | GDGCHC | 3 cut(s) | 90, 531, 727 |
| Bsp13I | TCCGGA | 1 cut(s) | 2056 |
| Bsp143I | GATC | 4 cut(s) | 170, 1186, 1789, 2142 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 950, 2271 |
| BspACI | CCGC | 9 cut(s) | 111, 245, 749, 783, 798, 947, 1272, 2388, 2390 |
| BspANI | GGCC | 2 cut(s) | 1433, 1440 |
| BspCNI | CTCAG | 5 cut(s) | 843, 1696, 2263, 2386, 2395 |
| BspEI | TCCGGA | 1 cut(s) | 2056 |
| BspFNI | CGCG | 1 cut(s) | 2390 |
| BspLI | GGNNCC | 4 cut(s) | 214, 528, 1575, 1739 |
| BspMI | ACCTGC | 1 cut(s) | 250 |
| BspPI | GGATC | 1 cut(s) | 2137 |
| BspTNI | GGTCTC | 1 cut(s) | 2246 |
| BsrDI | GCAATG | 3 cut(s) | 334, 602, 1477 |
| BsrFI | RCCGGY | 1 cut(s) | 1194 |
| BsrI | ACTGG | 4 cut(s) | 426, 613, 712, 2382 |
| BssAI | RCCGGY | 1 cut(s) | 1194 |
| BssECI | CCNNGG | 3 cut(s) | 822, 1568, 2388 |
| BssMI | GATC | 4 cut(s) | 170, 1186, 1789, 2142 |
| BssNI | GRCGYC | 3 cut(s) | 861, 1366, 2501 |
| BssSI | CACGAG | 4 cut(s) | 89, 396, 521, 1536 |
| Bst2BI | CACGAG | 4 cut(s) | 89, 396, 521, 1536 |
| Bst2UI | CCWGG | 2 cut(s) | 823, 1623 |
| Bst4CI | ACNGT | 8 cut(s) | 336, 1335, 1379, 1680, 1777, 1832, 1889, 2201 |
| Bst6I | CTCTTC | 2 cut(s) | 3, 996 |
| BstACI | GRCGYC | 3 cut(s) | 861, 1366, 2501 |
| BstC8I | GCNNGC | 3 cut(s) | 423, 855, 859 |
| BstDEI | CTNAG | 9 cut(s) | 417, 830, 950, 1268, 1704, 2246, 2271, 2394, 2403 |
| BstDSI | CCRYGG | 2 cut(s) | 1568, 2388 |
| BstF5I | GGATG | 5 cut(s) | 619, 874, 967, 1096, 1535 |
| BstFNI | CGCG | 1 cut(s) | 2390 |
| BstH2I | RGCGCY | 1 cut(s) | 2053 |
| BstHHI | GCGC | 3 cut(s) | 602, 631, 2052 |
| BstKTI | GATC | 4 cut(s) | 173, 1189, 1792, 2145 |
| BstMAI | GTCTC | 4 cut(s) | 101, 365, 2246, 2439 |
| BstMBI | GATC | 4 cut(s) | 170, 1186, 1789, 2142 |
| BstMWI | GCNNNNNNNGC | 8 cut(s) | 251, 810, 989, 1238, 1355, 1467, 1731, 2399 |
| BstNI | CCWGG | 2 cut(s) | 823, 1623 |
| BstNSI | RCATGY | 2 cut(s) | 857, 2197 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1688 |
| BstSCI | CCNGG | 4 cut(s) | 529, 821, 1011, 1621 |
| BstUI | CGCG | 1 cut(s) | 2390 |
| BstV2I | GAAGAC | 3 cut(s) | 944, 1669, 1684 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1429 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2246 |
| BsuRI | GGCC | 2 cut(s) | 1433, 1440 |
| BtgI | CCRYGG | 2 cut(s) | 1568, 2388 |
| BtgZI | GCGATG | 1 cut(s) | 563 |
| BtsCI | GGATG | 5 cut(s) | 619, 874, 967, 1096, 1535 |
| BtsI | GCAGTG | 1 cut(s) | 1468 |
| BtsIMutI | CAGTG | 7 cut(s) | 341, 838, 1468, 1756, 1799, 1837, 2044 |
| BveI | ACCTGC | 1 cut(s) | 250 |
| Cac8I | GCNNGC | 3 cut(s) | 423, 855, 859 |
| CaiI | CAGNNNCTG | 1 cut(s) | 2129 |
| CfoI | GCGC | 3 cut(s) | 602, 631, 2052 |
| Cfr10I | RCCGGY | 1 cut(s) | 1194 |
| Cfr42I | CCGCGG | 1 cut(s) | 2391 |
| CseI | GACGC | 5 cut(s) | 850, 1082, 1355, 1414, 1714 |
| CsiI | ACCWGGT | 1 cut(s) | 1621 |
| Csp6I | GTAC | 6 cut(s) | 339, 558, 827, 1141, 1922, 2197 |
| CspAI | ACCGGT | 1 cut(s) | 1194 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 38 |
| CviQI | GTAC | 6 cut(s) | 339, 558, 827, 1141, 1922, 2197 |
| DdeI | CTNAG | 9 cut(s) | 417, 830, 950, 1268, 1704, 2246, 2271, 2394, 2403 |
| DpnI | GATC | 4 cut(s) | 172, 1188, 1791, 2144 |
| DpnII | GATC | 4 cut(s) | 170, 1186, 1789, 2142 |
| EaeI | YGGCCR | 2 cut(s) | 1431, 1438 |
| Eam1104I | CTCTTC | 2 cut(s) | 3, 996 |
| EarI | CTCTTC | 2 cut(s) | 3, 996 |
| Ecl136II | GAGCTC | 1 cut(s) | 725 |
| Eco24I | GRGCYC | 2 cut(s) | 531, 727 |
| Eco31I | GGTCTC | 1 cut(s) | 2246 |
| Eco53kI | GAGCTC | 1 cut(s) | 725 |
| Eco57I | CTGAAG | 4 cut(s) | 98, 956, 1074, 1179 |
| Eco81I | CCTNAGG | 1 cut(s) | 2246 |
| Eco88I | CYCGRG | 2 cut(s) | 64, 726 |
| EcoICRI | GAGCTC | 1 cut(s) | 725 |
| EcoRII | CCWGG | 2 cut(s) | 821, 1621 |
| EcoT38I | GRGCYC | 2 cut(s) | 531, 727 |
| Esp3I | CGTCTC | 2 cut(s) | 365, 2439 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1014, 1046 |
| FaqI | GGGAC | 1 cut(s) | 2512 |
| FauI | CCCGC | 3 cut(s) | 104, 756, 2395 |
| FauNDI | CATATG | 1 cut(s) | 838 |
| FbaI | TGATCA | 1 cut(s) | 1789 |
| FblI | GTMKAC | 1 cut(s) | 704 |
| FokI | GGATG | 5 cut(s) | 606, 861, 974, 1083, 1542 |
| FriOI | GRGCYC | 2 cut(s) | 531, 727 |
| FspBI | CTAG | 4 cut(s) | 234, 555, 2292, 2510 |
| GlaI | GCGC | 3 cut(s) | 601, 630, 2051 |
| GsaI | CCCAGC | 1 cut(s) | 1644 |
| HaeII | RGCGCY | 1 cut(s) | 2053 |
| HaeIII | GGCC | 2 cut(s) | 1433, 1440 |
| HapII | CCGG | 4 cut(s) | 531, 1012, 1195, 2057 |
| HgaI | GACGC | 5 cut(s) | 850, 1082, 1355, 1414, 1714 |
| HhaI | GCGC | 3 cut(s) | 602, 631, 2052 |
| Hin1I | GRCGYC | 3 cut(s) | 861, 1366, 2501 |
| Hin6I | GCGC | 3 cut(s) | 600, 629, 2050 |
| HinP1I | GCGC | 3 cut(s) | 600, 629, 2050 |
| HincII | GTYRAC | 4 cut(s) | 1370, 1683, 2484, 2529 |
| HindII | GTYRAC | 4 cut(s) | 1370, 1683, 2484, 2529 |
| HindIII | AAGCTT | 3 cut(s) | 419, 1079, 1114 |
| HinfI | GANTC | 9 cut(s) | 287, 439, 478, 868, 1004, 1646, 1897, 2126, 2405 |
| HpaII | CCGG | 4 cut(s) | 531, 1012, 1195, 2057 |
| HphI | GGTGA | 6 cut(s) | 290, 392, 811, 1595, 1940, 2533 |
| Hpy166II | GTNNAC | 8 cut(s) | 339, 705, 1370, 1496, 1683, 2351, 2484, 2529 |
| Hpy188I | TCNGA | 7 cut(s) | 175, 201, 301, 483, 669, 1960, 2364 |
| Hpy8I | GTNNAC | 8 cut(s) | 339, 705, 1370, 1496, 1683, 2351, 2484, 2529 |
| Hpy99I | CGWCG | 1 cut(s) | 1730 |
| HpyAV | CCTTC | 7 cut(s) | 139, 690, 1018, 1154, 1338, 1795, 2080 |
| HpyCH4III | ACNGT | 8 cut(s) | 336, 1335, 1379, 1680, 1777, 1832, 1889, 2201 |
| HpyCH4IV | ACGT | 2 cut(s) | 452, 2501 |
| HpyF10VI | GCNNNNNNNGC | 8 cut(s) | 251, 810, 989, 1238, 1355, 1467, 1731, 2399 |
| HpyF3I | CTNAG | 9 cut(s) | 417, 830, 950, 1268, 1704, 2246, 2271, 2394, 2403 |
| HpySE526I | ACGT | 2 cut(s) | 452, 2501 |
| Hsp92I | GRCGYC | 3 cut(s) | 861, 1366, 2501 |
| HspAI | GCGC | 3 cut(s) | 600, 629, 2050 |
| Kpn2I | TCCGGA | 1 cut(s) | 2056 |
| Ksp22I | TGATCA | 1 cut(s) | 1789 |
| KspI | CCGCGG | 1 cut(s) | 2391 |
| Kzo9I | GATC | 4 cut(s) | 170, 1186, 1789, 2142 |
| LmnI | GCTCC | 7 cut(s) | 148, 218, 526, 722, 949, 1229, 1737 |
| LweI | GCATC | 4 cut(s) | 540, 883, 930, 1520 |
| MabI | ACCWGGT | 1 cut(s) | 1621 |
| MaeI | CTAG | 4 cut(s) | 234, 555, 2292, 2510 |
| MaeII | ACGT | 2 cut(s) | 452, 2501 |
| MaeIII | GTNAC | 7 cut(s) | 260, 1197, 1310, 1379, 1841, 1889, 2135 |
| MalI | GATC | 4 cut(s) | 172, 1188, 1791, 2144 |
| MboI | GATC | 4 cut(s) | 170, 1186, 1789, 2142 |
| MboII | GAAGA | 8 cut(s) | 20, 113, 949, 1013, 1159, 1641, 1674, 1684 |
| MfeI | CAATTG | 1 cut(s) | 1452 |
| MhlI | GDGCHC | 3 cut(s) | 90, 531, 727 |
| MlsI | TGGCCA | 1 cut(s) | 1433 |
| MluNI | TGGCCA | 1 cut(s) | 1433 |
| MlyI | GAGTC | 5 cut(s) | 296, 862, 1013, 2135, 2414 |
| Mox20I | TGGCCA | 1 cut(s) | 1433 |
| MroI | TCCGGA | 1 cut(s) | 2056 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1805, 2170 |
| MscI | TGGCCA | 1 cut(s) | 1433 |
| MseI | TTAA | 5 cut(s) | 633, 690, 1032, 1847, 2210 |
| MslI | CAYNNNNRTG | 3 cut(s) | 156, 624, 893 |
| Msp20I | TGGCCA | 1 cut(s) | 1433 |
| MspA1I | CMGCKG | 1 cut(s) | 2390 |
| MspI | CCGG | 4 cut(s) | 531, 1012, 1195, 2057 |
| MspR9I | CCNGG | 4 cut(s) | 531, 823, 1013, 1623 |
| MunI | CAATTG | 1 cut(s) | 1452 |
| Mva1269I | GAATGC | 1 cut(s) | 151 |
| MvaI | CCWGG | 2 cut(s) | 823, 1623 |
| MvnI | CGCG | 1 cut(s) | 2390 |
| MwoI | GCNNNNNNNGC | 8 cut(s) | 251, 810, 989, 1238, 1355, 1467, 1731, 2399 |
| NciI | CCSGG | 2 cut(s) | 531, 1013 |
| NdeI | CATATG | 1 cut(s) | 838 |
| NdeII | GATC | 4 cut(s) | 170, 1186, 1789, 2142 |
| NlaIV | GGNNCC | 4 cut(s) | 214, 528, 1575, 1739 |
| NmeAIII | GCCGAG | 1 cut(s) | 850 |
| NmuCI | GTSAC | 4 cut(s) | 1310, 1379, 1841, 2135 |
| NspI | RCATGY | 2 cut(s) | 857, 2197 |
| PaeI | GCATGC | 1 cut(s) | 857 |
| PaeR7I | CTCGAG | 1 cut(s) | 726 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 96 |
| PctI | GAATGC | 1 cut(s) | 151 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1805, 2170 |
| PfeI | GAWTC | 4 cut(s) | 439, 478, 1646, 1897 |
| PinAI | ACCGGT | 1 cut(s) | 1194 |
| PleI | GAGTC | 5 cut(s) | 295, 862, 1012, 2134, 2413 |
| PpsI | GAGTC | 5 cut(s) | 295, 862, 1012, 2134, 2413 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1688 |
| PsiI | TTATAA | 1 cut(s) | 1781 |
| Psp124BI | GAGCTC | 1 cut(s) | 727 |
| Psp6I | CCWGG | 2 cut(s) | 821, 1621 |
| PspFI | CCCAGC | 1 cut(s) | 1640 |
| PspGI | CCWGG | 2 cut(s) | 821, 1621 |
| PspN4I | GGNNCC | 4 cut(s) | 214, 528, 1575, 1739 |
| PspXI | VCTCGAGB | 1 cut(s) | 726 |
| PstNI | CAGNNNCTG | 1 cut(s) | 2129 |
| RsaI | GTAC | 6 cut(s) | 340, 559, 828, 1142, 1923, 2198 |
| RsaNI | GTAC | 6 cut(s) | 339, 558, 827, 1141, 1922, 2197 |
| RseI | CAYNNNNRTG | 3 cut(s) | 156, 624, 893 |
| SacI | GAGCTC | 1 cut(s) | 727 |
| SacII | CCGCGG | 1 cut(s) | 2391 |
| SaqAI | TTAA | 5 cut(s) | 633, 690, 1032, 1847, 2210 |
| Sau3AI | GATC | 4 cut(s) | 170, 1186, 1789, 2142 |
| ScaI | AGTACT | 1 cut(s) | 1923 |
| SchI | GAGTC | 5 cut(s) | 296, 862, 1013, 2135, 2414 |
| ScrFI | CCNGG | 4 cut(s) | 531, 823, 1013, 1623 |
| SduI | GDGCHC | 3 cut(s) | 90, 531, 727 |
| SexAI | ACCWGGT | 1 cut(s) | 1621 |
| SfaNI | GCATC | 4 cut(s) | 540, 883, 930, 1520 |
| Sfr274I | CTCGAG | 1 cut(s) | 726 |
| Sfr303I | CCGCGG | 1 cut(s) | 2391 |
| SgrBI | CCGCGG | 1 cut(s) | 2391 |
| SlaI | CTCGAG | 1 cut(s) | 726 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 156, 624, 893 |
| SmlI | CTYRAG | 3 cut(s) | 322, 726, 1578 |
| SmoI | CTYRAG | 3 cut(s) | 322, 726, 1578 |
| SpeI | ACTAGT | 1 cut(s) | 2291 |
| SphI | GCATGC | 1 cut(s) | 857 |
| SsiI | CCGC | 9 cut(s) | 111, 245, 749, 783, 798, 947, 1272, 2388, 2390 |
| SspI | AATATT | 1 cut(s) | 2170 |
| SspMI | CTAG | 4 cut(s) | 234, 555, 2292, 2510 |
| SstI | GAGCTC | 1 cut(s) | 727 |
| StyD4I | CCNGG | 4 cut(s) | 529, 821, 1011, 1621 |
| TaaI | ACNGT | 8 cut(s) | 336, 1335, 1379, 1680, 1777, 1832, 1889, 2201 |
| TaiI | ACGT | 2 cut(s) | 455, 2504 |
| TaqI | TCGA | 6 cut(s) | 99, 727, 1036, 2078, 2098, 2459 |
| TatI | WGTACW | 3 cut(s) | 557, 1921, 2196 |
| TauI | GCSGC | 3 cut(s) | 801, 1275, 2393 |
| TfiI | GAWTC | 4 cut(s) | 439, 478, 1646, 1897 |
| Tru1I | TTAA | 5 cut(s) | 633, 690, 1032, 1847, 2210 |
| Tru9I | TTAA | 5 cut(s) | 633, 690, 1032, 1847, 2210 |
| TscAI | CASTG | 7 cut(s) | 341, 838, 1468, 1756, 1799, 1837, 2044 |
| TseFI | GTSAC | 4 cut(s) | 1310, 1379, 1841, 2135 |
| Tsp45I | GTSAC | 4 cut(s) | 1310, 1379, 1841, 2135 |
| TspDTI | ATGAA | 9 cut(s) | 420, 573, 608, 978, 1014, 1725, 1782, 1889, 2325 |
| TspGWI | ACGGA | 5 cut(s) | 279, 284, 1116, 1840, 2022 |
| TspRI | CASTG | 7 cut(s) | 341, 838, 1468, 1756, 1799, 1837, 2044 |
| XapI | RAATTY | 4 cut(s) | 304, 411, 1654, 1915 |
| XceI | RCATGY | 2 cut(s) | 857, 2197 |
| XhoI | CTCGAG | 1 cut(s) | 726 |
| XmiI | GTMKAC | 1 cut(s) | 704 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1805, 2170 |
| XspI | CTAG | 4 cut(s) | 234, 555, 2292, 2510 |
| ZraI | GACGTC | 1 cut(s) | 2502 |
| ZrmI | AGTACT | 1 cut(s) | 1923 |