TPL-binding domain in jasmonate signalling
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G37520 AT3G53680 AT3G53680 |
| fragaria_vesca | FvH4_6g14290 FvH4_6g14290 FvH4_6g14290 |
| malus_domestica | MD04G1122100.v1.1 MD12G1138700.v1.1 |
| prunus_persica | Prupe.6G250600_v2.0.a1 |
| pyrus_communis | pycom04g11070 pycom12g13270 |
| rosa_chinensis | RchiOBHm_Chr3g0467251 |
| rosa_laevigata | RLG00000024514 |
| rosa_multiflora | Rmu_sc0019565.1_g000001 |
| rosa_roxburghii | Rroxscaffold_6G00413780 |
| rosa_rugosa | Rorug03G0086100 Rorug03G0086200 |
| rosa_samantha | Rh3AG134500 Rh3BG155800 Rh3CG155400 Rh3DG156600 |
| rosa_wichuraiana | Rw3G012730 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 764, 1772 |
| AatII | GACGTC | 2 cut(s) | 1060, 2492 |
| Acc36I | ACCTGC | 2 cut(s) | 250, 557 |
| AccI | GTMKAC | 1 cut(s) | 692 |
| AccII | CGCG | 1 cut(s) | 2378 |
| AccIII | TCCGGA | 3 cut(s) | 518, 1962, 2044 |
| AciI | CCGC | 6 cut(s) | 111, 276, 771, 786, 2376, 2378 |
| AclWI | GGATC | 2 cut(s) | 2125, 2215 |
| AcoI | YGGCCR | 1 cut(s) | 1419 |
| AcsI | RAATTY | 5 cut(s) | 304, 414, 461, 1796, 1906 |
| AcuI | CTGAAG | 3 cut(s) | 944, 1062, 1167 |
| AcyI | GRCGYC | 3 cut(s) | 1057, 1354, 2489 |
| AfaI | GTAC | 5 cut(s) | 343, 547, 616, 816, 2186 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 2140, 2356 |
| AgeI | ACCGGT | 1 cut(s) | 1182 |
| AhlI | ACTAGT | 1 cut(s) | 2279 |
| AjnI | CCWGG | 2 cut(s) | 809, 1609 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1788, 1820 |
| Alw21I | GWGCWC | 1 cut(s) | 90 |
| Alw26I | GTCTC | 4 cut(s) | 101, 201, 314, 2234 |
| AlwI | GGATC | 2 cut(s) | 2125, 2215 |
| Ama87I | CYCGRG | 3 cut(s) | 64, 399, 714 |
| Aor13HI | TCCGGA | 3 cut(s) | 518, 1962, 2044 |
| AoxI | GGCC | 2 cut(s) | 896, 1419 |
| ApoI | RAATTY | 5 cut(s) | 304, 414, 461, 1796, 1906 |
| AsiGI | ACCGGT | 1 cut(s) | 1182 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1796, 2158 |
| AspLEI | GCGC | 1 cut(s) | 590 |
| AspS9I | GGNCC | 1 cut(s) | 148 |
| AsuHPI | GGTGA | 6 cut(s) | 17, 290, 395, 799, 1172, 1583 |
| AvaI | CYCGRG | 3 cut(s) | 64, 399, 714 |
| AvaII | GGWCC | 1 cut(s) | 148 |
| AxyI | CCTNAGG | 1 cut(s) | 2234 |
| BalI | TGGCCA | 1 cut(s) | 1421 |
| BanII | GRGCYC | 2 cut(s) | 314, 715 |
| BauI | CACGAG | 2 cut(s) | 89, 1524 |
| BbsI | GAAGAC | 3 cut(s) | 932, 1660, 1675 |
| Bbv12I | GWGCWC | 1 cut(s) | 90 |
| BbvCI | CCTCAGC | 1 cut(s) | 2382 |
| BccI | CCATC | 7 cut(s) | 32, 326, 701, 1025, 1208, 1448, 1508 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 255, 289 |
| BciT130I | CCWGG | 2 cut(s) | 811, 1611 |
| BcoDI | GTCTC | 4 cut(s) | 101, 201, 314, 2234 |
| BcuI | ACTAGT | 1 cut(s) | 2279 |
| BfaI | CTAG | 4 cut(s) | 234, 543, 2280, 2498 |
| BfuAI | ACCTGC | 2 cut(s) | 250, 557 |
| BlpI | GCTNAGC | 1 cut(s) | 2259 |
| Bme1390I | CCNGG | 2 cut(s) | 811, 1611 |
| Bme18I | GGWCC | 1 cut(s) | 148 |
| BmeT110I | CYCGRG | 3 cut(s) | 64, 399, 714 |
| BmgT120I | GGNCC | 1 cut(s) | 148 |
| BmiI | GGNNCC | 3 cut(s) | 214, 1563, 1730 |
| BmrFI | CCNGG | 2 cut(s) | 811, 1611 |
| BmsI | GCATC | 3 cut(s) | 871, 918, 1508 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1679 |
| BpiI | GAAGAC | 3 cut(s) | 932, 1660, 1675 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 197, 229 |
| Bpu10I | CCTNAGC | 2 cut(s) | 420, 2382 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2259 |
| BpuEI | CTTGAG | 3 cut(s) | 277, 346, 1551 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1173 |
| BsaHI | GRCGYC | 3 cut(s) | 1057, 1354, 2489 |
| BsaI | GGTCTC | 2 cut(s) | 314, 2234 |
| BsaJI | CCNNGG | 3 cut(s) | 810, 2376, 2482 |
| BsaWI | WCCGGW | 4 cut(s) | 518, 1182, 1962, 2044 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 2355, 2385 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 2140, 2356 |
| Bse118I | RCCGGY | 2 cut(s) | 1182, 1628 |
| Bse1I | ACTGG | 4 cut(s) | 700, 899, 1783, 2370 |
| Bse21I | CCTNAGG | 1 cut(s) | 2234 |
| Bse3DI | GCAATG | 1 cut(s) | 543 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1173 |
| BseAI | TCCGGA | 3 cut(s) | 518, 1962, 2044 |
| BseBI | CCWGG | 2 cut(s) | 811, 1611 |
| BseDI | CCNNGG | 3 cut(s) | 810, 2376, 2482 |
| BseGI | GGATG | 5 cut(s) | 607, 862, 955, 1084, 1523 |
| BseJI | GATNNNNATC | 1 cut(s) | 1173 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 2140, 2356 |
| BseMI | GCAATG | 1 cut(s) | 543 |
| BseMII | CTCAG | 5 cut(s) | 306, 832, 1686, 2250, 2373 |
| BseNI | ACTGG | 4 cut(s) | 700, 899, 1783, 2370 |
| BseRI | GAGGAG | 1 cut(s) | 332 |
| BsgI | GTGCAG | 2 cut(s) | 1764, 2486 |
| Bsh1236I | CGCG | 1 cut(s) | 2378 |
| Bsh1285I | CGRYCG | 1 cut(s) | 2271 |
| BshFI | GGCC | 2 cut(s) | 898, 1421 |
| BshTI | ACCGGT | 1 cut(s) | 1182 |
| BsiEI | CGRYCG | 1 cut(s) | 2271 |
| BsiHKAI | GWGCWC | 1 cut(s) | 90 |
| BsiHKCI | CYCGRG | 3 cut(s) | 64, 399, 714 |
| BsiSI | CCGG | 6 cut(s) | 519, 597, 1183, 1629, 1963, 2045 |
| BslFI | GGGAC | 2 cut(s) | 1832, 2500 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 2140, 2356 |
| BsmAI | GTCTC | 4 cut(s) | 101, 201, 314, 2234 |
| BsmFI | GGGAC | 2 cut(s) | 1832, 2500 |
| BsmI | GAATGC | 1 cut(s) | 441 |
| BsnI | GGCC | 2 cut(s) | 898, 1421 |
| Bso31I | GGTCTC | 2 cut(s) | 314, 2234 |
| BsoBI | CYCGRG | 3 cut(s) | 64, 399, 714 |
| Bsp1286I | GDGCHC | 3 cut(s) | 90, 314, 715 |
| Bsp13I | TCCGGA | 3 cut(s) | 518, 1962, 2044 |
| Bsp143I | GATC | 4 cut(s) | 1174, 2130, 2207, 2268 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2259 |
| BspACI | CCGC | 6 cut(s) | 111, 276, 771, 786, 2376, 2378 |
| BspANI | GGCC | 2 cut(s) | 898, 1421 |
| BspCNI | CTCAG | 5 cut(s) | 307, 831, 1687, 2251, 2374 |
| BspEI | TCCGGA | 3 cut(s) | 518, 1962, 2044 |
| BspFNI | CGCG | 1 cut(s) | 2378 |
| BspHI | TCATGA | 1 cut(s) | 1399 |
| BspLI | GGNNCC | 3 cut(s) | 214, 1563, 1730 |
| BspMI | ACCTGC | 2 cut(s) | 250, 557 |
| BspPI | GGATC | 2 cut(s) | 2125, 2215 |
| BspTNI | GGTCTC | 2 cut(s) | 314, 2234 |
| BsrDI | GCAATG | 1 cut(s) | 543 |
| BsrFI | RCCGGY | 2 cut(s) | 1182, 1628 |
| BsrI | ACTGG | 4 cut(s) | 700, 899, 1783, 2370 |
| BssAI | RCCGGY | 2 cut(s) | 1182, 1628 |
| BssECI | CCNNGG | 3 cut(s) | 810, 2376, 2482 |
| BssMI | GATC | 4 cut(s) | 1174, 2130, 2207, 2268 |
| BssNI | GRCGYC | 3 cut(s) | 1057, 1354, 2489 |
| BssSI | CACGAG | 2 cut(s) | 89, 1524 |
| Bst2BI | CACGAG | 2 cut(s) | 89, 1524 |
| Bst2UI | CCWGG | 2 cut(s) | 811, 1611 |
| Bst4CI | ACNGT | 9 cut(s) | 339, 346, 1323, 1367, 1768, 1823, 1880, 2115, 2189 |
| Bst6I | CTCTTC | 3 cut(s) | 3, 496, 984 |
| BstACI | GRCGYC | 3 cut(s) | 1057, 1354, 2489 |
| BstC8I | GCNNGC | 3 cut(s) | 843, 973, 1971 |
| BstDEI | CTNAG | 8 cut(s) | 315, 420, 818, 938, 1695, 2234, 2259, 2382 |
| BstDSI | CCRYGG | 1 cut(s) | 2376 |
| BstF5I | GGATG | 5 cut(s) | 607, 862, 955, 1084, 1523 |
| BstFNI | CGCG | 1 cut(s) | 2378 |
| BstHHI | GCGC | 1 cut(s) | 590 |
| BstKTI | GATC | 4 cut(s) | 1177, 2133, 2210, 2271 |
| BstMAI | GTCTC | 4 cut(s) | 101, 201, 314, 2234 |
| BstMBI | GATC | 4 cut(s) | 1174, 2130, 2207, 2268 |
| BstMCI | CGRYCG | 1 cut(s) | 2271 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 798, 977, 1226, 1343, 1722, 2387 |
| BstNI | CCWGG | 2 cut(s) | 811, 1611 |
| BstNSI | RCATGY | 3 cut(s) | 845, 1973, 2185 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1679 |
| BstSCI | CCNGG | 2 cut(s) | 809, 1609 |
| BstUI | CGCG | 1 cut(s) | 2378 |
| BstV2I | GAAGAC | 3 cut(s) | 932, 1660, 1675 |
| BstX2I | RGATCY | 1 cut(s) | 2207 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1417 |
| BstYI | RGATCY | 1 cut(s) | 2207 |
| Bsu36I | CCTNAGG | 1 cut(s) | 2234 |
| BsuRI | GGCC | 2 cut(s) | 898, 1421 |
| BtgI | CCRYGG | 1 cut(s) | 2376 |
| BtgZI | GCGATG | 1 cut(s) | 345 |
| BtsCI | GGATG | 5 cut(s) | 607, 862, 955, 1084, 1523 |
| BtsI | GCAGTG | 3 cut(s) | 590, 1456, 2514 |
| BtsIMutI | CAGTG | 9 cut(s) | 344, 590, 826, 1456, 1747, 1790, 1828, 2032, 2514 |
| BveI | ACCTGC | 2 cut(s) | 250, 557 |
| Cac8I | GCNNGC | 3 cut(s) | 843, 973, 1971 |
| CciI | TCATGA | 1 cut(s) | 1399 |
| CfoI | GCGC | 1 cut(s) | 590 |
| Cfr10I | RCCGGY | 2 cut(s) | 1182, 1628 |
| Cfr13I | GGNCC | 1 cut(s) | 148 |
| Cfr42I | CCGCGG | 1 cut(s) | 2379 |
| CseI | GACGC | 2 cut(s) | 1343, 1402 |
| CsiI | ACCWGGT | 1 cut(s) | 1609 |
| Csp6I | GTAC | 5 cut(s) | 342, 546, 615, 815, 2185 |
| CspAI | ACCGGT | 1 cut(s) | 1182 |
| CspCI | CAANNNNNGTGG | 1 cut(s) | 38 |
| CviQI | GTAC | 5 cut(s) | 342, 546, 615, 815, 2185 |
| DdeI | CTNAG | 8 cut(s) | 315, 420, 818, 938, 1695, 2234, 2259, 2382 |
| DpnI | GATC | 4 cut(s) | 1176, 2132, 2209, 2270 |
| DpnII | GATC | 4 cut(s) | 1174, 2130, 2207, 2268 |
| EaeI | YGGCCR | 1 cut(s) | 1419 |
| Eam1104I | CTCTTC | 3 cut(s) | 3, 496, 984 |
| EarI | CTCTTC | 3 cut(s) | 3, 496, 984 |
| Eco24I | GRGCYC | 2 cut(s) | 314, 715 |
| Eco31I | GGTCTC | 2 cut(s) | 314, 2234 |
| Eco47I | GGWCC | 1 cut(s) | 148 |
| Eco57I | CTGAAG | 3 cut(s) | 944, 1062, 1167 |
| Eco81I | CCTNAGG | 1 cut(s) | 2234 |
| Eco88I | CYCGRG | 3 cut(s) | 64, 399, 714 |
| EcoRI | GAATTC | 2 cut(s) | 304, 1796 |
| EcoRII | CCWGG | 2 cut(s) | 809, 1609 |
| EcoT38I | GRGCYC | 2 cut(s) | 314, 715 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1002, 1034 |
| FaqI | GGGAC | 2 cut(s) | 1832, 2500 |
| FauI | CCCGC | 2 cut(s) | 104, 2383 |
| FauNDI | CATATG | 1 cut(s) | 826 |
| FblI | GTMKAC | 1 cut(s) | 692 |
| FokI | GGATG | 5 cut(s) | 594, 849, 962, 1071, 1530 |
| FriOI | GRGCYC | 2 cut(s) | 314, 715 |
| FspBI | CTAG | 4 cut(s) | 234, 543, 2280, 2498 |
| GlaI | GCGC | 1 cut(s) | 589 |
| HaeIII | GGCC | 2 cut(s) | 898, 1421 |
| HapII | CCGG | 6 cut(s) | 519, 597, 1183, 1629, 1963, 2045 |
| HgaI | GACGC | 2 cut(s) | 1343, 1402 |
| HhaI | GCGC | 1 cut(s) | 590 |
| Hin1I | GRCGYC | 3 cut(s) | 1057, 1354, 2489 |
| Hin6I | GCGC | 1 cut(s) | 588 |
| HinP1I | GCGC | 1 cut(s) | 588 |
| HincII | GTYRAC | 3 cut(s) | 1358, 2472, 2517 |
| HindII | GTYRAC | 3 cut(s) | 1358, 2472, 2517 |
| HindIII | AAGCTT | 2 cut(s) | 422, 1102 |
| HpaII | CCGG | 6 cut(s) | 519, 597, 1183, 1629, 1963, 2045 |
| HphI | GGTGA | 6 cut(s) | 17, 290, 395, 799, 1172, 1583 |
| Hpy166II | GTNNAC | 6 cut(s) | 342, 693, 1358, 1484, 2472, 2517 |
| Hpy188I | TCNGA | 9 cut(s) | 101, 175, 201, 316, 657, 1002, 1951, 2268, 2483 |
| Hpy8I | GTNNAC | 6 cut(s) | 342, 693, 1358, 1484, 2472, 2517 |
| Hpy99I | CGWCG | 1 cut(s) | 1062 |
| HpyAV | CCTTC | 7 cut(s) | 139, 678, 1142, 1158, 1326, 1786, 2497 |
| HpyCH4III | ACNGT | 9 cut(s) | 339, 346, 1323, 1367, 1768, 1823, 1880, 2115, 2189 |
| HpyCH4IV | ACGT | 5 cut(s) | 169, 455, 1057, 1669, 2489 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 798, 977, 1226, 1343, 1722, 2387 |
| HpyF3I | CTNAG | 8 cut(s) | 315, 420, 818, 938, 1695, 2234, 2259, 2382 |
| HpySE526I | ACGT | 5 cut(s) | 169, 455, 1057, 1669, 2489 |
| Hsp92I | GRCGYC | 3 cut(s) | 1057, 1354, 2489 |
| HspAI | GCGC | 1 cut(s) | 588 |
| Kpn2I | TCCGGA | 3 cut(s) | 518, 1962, 2044 |
| KspI | CCGCGG | 1 cut(s) | 2379 |
| Kzo9I | GATC | 4 cut(s) | 1174, 2130, 2207, 2268 |
| LmnI | GCTCC | 7 cut(s) | 218, 937, 1074, 1217, 1728, 1922, 1945 |
| LweI | GCATC | 3 cut(s) | 871, 918, 1508 |
| MabI | ACCWGGT | 1 cut(s) | 1609 |
| MaeI | CTAG | 4 cut(s) | 234, 543, 2280, 2498 |
| MaeII | ACGT | 5 cut(s) | 169, 455, 1057, 1669, 2489 |
| MaeIII | GTNAC | 8 cut(s) | 1185, 1298, 1367, 1778, 1832, 2123, 2303, 2337 |
| MalI | GATC | 4 cut(s) | 1176, 2132, 2209, 2270 |
| MboI | GATC | 4 cut(s) | 1174, 2130, 2207, 2268 |
| MboII | GAAGA | 9 cut(s) | 20, 483, 937, 1001, 1147, 1169, 1632, 1665, 1675 |
| MfeI | CAATTG | 1 cut(s) | 1440 |
| MflI | RGATCY | 1 cut(s) | 2207 |
| MhlI | GDGCHC | 3 cut(s) | 90, 314, 715 |
| MlsI | TGGCCA | 1 cut(s) | 1421 |
| MluNI | TGGCCA | 1 cut(s) | 1421 |
| MlyI | GAGTC | 8 cut(s) | 113, 296, 482, 524, 850, 1001, 2044, 2402 |
| MmeI | TCCRAC | 2 cut(s) | 557, 612 |
| Mox20I | TGGCCA | 1 cut(s) | 1421 |
| MroI | TCCGGA | 3 cut(s) | 518, 1962, 2044 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1796, 2158 |
| MscI | TGGCCA | 1 cut(s) | 1421 |
| MseI | TTAA | 2 cut(s) | 678, 1838 |
| MslI | CAYNNNNRTG | 4 cut(s) | 156, 501, 846, 881 |
| Msp20I | TGGCCA | 1 cut(s) | 1421 |
| MspA1I | CMGCKG | 1 cut(s) | 2378 |
| MspI | CCGG | 6 cut(s) | 519, 597, 1183, 1629, 1963, 2045 |
| MspR9I | CCNGG | 2 cut(s) | 811, 1611 |
| MunI | CAATTG | 1 cut(s) | 1440 |
| Mva1269I | GAATGC | 1 cut(s) | 441 |
| MvaI | CCWGG | 2 cut(s) | 811, 1611 |
| MvnI | CGCG | 1 cut(s) | 2378 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 798, 977, 1226, 1343, 1722, 2387 |
| NdeI | CATATG | 1 cut(s) | 826 |
| NdeII | GATC | 4 cut(s) | 1174, 2130, 2207, 2268 |
| NlaIV | GGNNCC | 3 cut(s) | 214, 1563, 1730 |
| NmeAIII | GCCGAG | 2 cut(s) | 838, 2416 |
| NmuCI | GTSAC | 5 cut(s) | 1298, 1367, 1778, 1832, 2123 |
| NspI | RCATGY | 3 cut(s) | 845, 1973, 2185 |
| PaeI | GCATGC | 2 cut(s) | 845, 1973 |
| PaeR7I | CTCGAG | 1 cut(s) | 714 |
| PagI | TCATGA | 1 cut(s) | 1399 |
| PctI | GAATGC | 1 cut(s) | 441 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1796, 2158 |
| PfeI | GAWTC | 3 cut(s) | 593, 1637, 1888 |
| PinAI | ACCGGT | 1 cut(s) | 1182 |
| Ple19I | CGATCG | 1 cut(s) | 2271 |
| PleI | GAGTC | 8 cut(s) | 113, 295, 482, 523, 850, 1000, 2043, 2401 |
| PpsI | GAGTC | 8 cut(s) | 113, 295, 482, 523, 850, 1000, 2043, 2401 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1679 |
| PsiI | TTATAA | 2 cut(s) | 764, 1772 |
| Psp6I | CCWGG | 2 cut(s) | 809, 1609 |
| PspGI | CCWGG | 2 cut(s) | 809, 1609 |
| PspN4I | GGNNCC | 3 cut(s) | 214, 1563, 1730 |
| PspPI | GGNCC | 1 cut(s) | 148 |
| PspXI | VCTCGAGB | 1 cut(s) | 714 |
| PsuI | RGATCY | 1 cut(s) | 2207 |
| PvuI | CGATCG | 1 cut(s) | 2271 |
| RsaI | GTAC | 5 cut(s) | 343, 547, 616, 816, 2186 |
| RsaNI | GTAC | 5 cut(s) | 342, 546, 615, 815, 2185 |
| RseI | CAYNNNNRTG | 4 cut(s) | 156, 501, 846, 881 |
| SacII | CCGCGG | 1 cut(s) | 2379 |
| SaqAI | TTAA | 2 cut(s) | 678, 1838 |
| Sau3AI | GATC | 4 cut(s) | 1174, 2130, 2207, 2268 |
| Sau96I | GGNCC | 1 cut(s) | 148 |
| SchI | GAGTC | 8 cut(s) | 113, 296, 482, 524, 850, 1001, 2044, 2402 |
| ScrFI | CCNGG | 2 cut(s) | 811, 1611 |
| SduI | GDGCHC | 3 cut(s) | 90, 314, 715 |
| SexAI | ACCWGGT | 1 cut(s) | 1609 |
| SfaNI | GCATC | 3 cut(s) | 871, 918, 1508 |
| Sfr274I | CTCGAG | 1 cut(s) | 714 |
| Sfr303I | CCGCGG | 1 cut(s) | 2379 |
| SgrBI | CCGCGG | 1 cut(s) | 2379 |
| SinI | GGWCC | 1 cut(s) | 148 |
| SlaI | CTCGAG | 1 cut(s) | 714 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 156, 501, 846, 881 |
| SmlI | CTYRAG | 4 cut(s) | 292, 325, 714, 1566 |
| SmoI | CTYRAG | 4 cut(s) | 292, 325, 714, 1566 |
| SpeI | ACTAGT | 1 cut(s) | 2279 |
| SphI | GCATGC | 2 cut(s) | 845, 1973 |
| SsiI | CCGC | 6 cut(s) | 111, 276, 771, 786, 2376, 2378 |
| SspI | AATATT | 2 cut(s) | 1648, 2158 |
| SspMI | CTAG | 4 cut(s) | 234, 543, 2280, 2498 |
| StyD4I | CCNGG | 2 cut(s) | 809, 1609 |
| TaaI | ACNGT | 9 cut(s) | 339, 346, 1323, 1367, 1768, 1823, 1880, 2115, 2189 |
| TaiI | ACGT | 5 cut(s) | 172, 458, 1060, 1672, 2492 |
| TaqI | TCGA | 3 cut(s) | 715, 2086, 2447 |
| TatI | WGTACW | 4 cut(s) | 341, 545, 614, 2184 |
| TauI | GCSGC | 2 cut(s) | 789, 2381 |
| TfiI | GAWTC | 3 cut(s) | 593, 1637, 1888 |
| Tru1I | TTAA | 2 cut(s) | 678, 1838 |
| Tru9I | TTAA | 2 cut(s) | 678, 1838 |
| TscAI | CASTG | 9 cut(s) | 344, 590, 826, 1456, 1747, 1790, 1828, 2032, 2514 |
| TseFI | GTSAC | 5 cut(s) | 1298, 1367, 1778, 1832, 2123 |
| Tsp45I | GTSAC | 5 cut(s) | 1298, 1367, 1778, 1832, 2123 |
| TspGWI | ACGGA | 1 cut(s) | 2010 |
| TspRI | CASTG | 9 cut(s) | 344, 590, 826, 1456, 1747, 1790, 1828, 2032, 2514 |
| VpaK11BI | GGWCC | 1 cut(s) | 148 |
| XapI | RAATTY | 5 cut(s) | 304, 414, 461, 1796, 1906 |
| XceI | RCATGY | 3 cut(s) | 845, 1973, 2185 |
| XhoI | CTCGAG | 1 cut(s) | 714 |
| XmiI | GTMKAC | 1 cut(s) | 692 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1796, 2158 |
| XspI | CTAG | 4 cut(s) | 234, 543, 2280, 2498 |
| ZraI | GACGTC | 2 cut(s) | 1058, 2490 |