Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015205

Physical Location & Seq

Genomic Coordinates Forward (+)

19900240 .. 19903173

Gene Structure 2934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G53700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2265 bp

ATGGCTTTCTCTTCATGTCTCAAATTCTATCCATTTTCTATCTCTCAAGCTGTAACCCTAACTCATCATTCCTTCTCTCTCAATCTAACTCCTCCTTCTTCTACCATCTCCTTCGCTTCTCCTCACTCAGCAGCTCTCTCCTCTACCGATGTCAAGCTTCTCGACTCACTCCGTAGCCAGCCTGATGATTCCGCCGCACTTCGTCTCTTTAATCTGGCCTCTAAGAAGCCAAATTTCTCACCTGAACCTGCTCTATACGAAGAGATTCTCCTTCGGCTAGGTCGGTCTGGTTCGTTTGATGACATGAAGAAAATTCTTGAAGACATGAAGAGTTCCAGATGCGAAATGGGTACTTCTACTTTCTTGATATTAATCGAGAGTTATGCTCAGTTCGAATTGCAAGATGAGATTTTAAGTGTTGTTGATTGGATGATTGACGAATTCGGGTTAAAACCCGATACCCATTTTTATAACCGGATGTTGAATCTTCTCGTTGATGGGAATAGTCTGAAACTCGTTGAGATTTCTCACGCGAAGATGAGTGTCTGGGGGATTAAACCAGATGTATCTACGTTTAATGTTTTGATCAAAGCTTTGTGTAGAGCTCATCAGCTTAGACCTGCGATTTTGATGTTGGAGGATATGCCTAGTTACGGTCTTGTTCCTGATGAGAAGACATTTACAACGGTTATGCAAGGCTATATTGAAGAAGGGGACTTGGATGGAGCTTTGAGGATTAGGGAACAGATGGTTGAGTTTGGTTGTTCATGGTCTAATGTGAGTGTTAATGTTATTGTTCATGGTTTTTGTAAGGAAGGGAGAGTCGAAGACGCTCTCAATTTCATTCAGGAGATGTCTAATCAAGACGGGTTTTTTCCGGATCAGTACACGTTTAATACGTTAGTTAATGGTTTGTGTAAAGCAGGGCATGTGAAGCATGCTATTGAGATTATGGATGTGATGCTTCAAGAAGGGTATGATCCAGATGTGTATACTTATAACTCGGTGATTTCGGGTTTGTGTAAGCTTGGAGAGGTGAAAGAAGCAGTGGAGGTTCTTGATCAGATGATTACTAGAGATTGTTCTCCGAACACGGTTACTTACAACACTTTGATCAGCACGTTATGTAAAGAGAATCAGGTCGAGGAAGCTACGGAGCTTGCCCGTGTTCTCACCAGCAAAGGGATCCTTCCTGACGTTTGTACATTTAACTCTTTGATCCAAGGTTTGTGTTTGACTAGGAATCACCGGGTTGCGATGGAGTTGTTTGAAGAGATGAGGAGCAAAGGATGTGAGCCTGACGAGTTCACTTACAATATGCTGATTGATAGCTTATGCTCCAAAGGGAAGCTAGATGAAGCTCTGAACATGCTTAAACAAATGGAATTGAGTGGTTGTGCACGGAGTGTGATAACTTACAACACTTTGATTGATGGGTTTTGCAAAGCCAACAAGACTAGAGAAGCCGAGGAGATATTTGATGAGATGGAAGTACATGGAGTTTCAAGAAACTCTGTTACATACAACACACTCATCGATGGGCTTTGTAAAAGCAGGCGAGTAGAGGACGCGGCTCAGCTCATGGATCAAATGATTATGGAAGGACAGAAACCTGACAAGTACACATACAACTCGCTTTTAACACATTTCTGCAGAGGAGGTGACATAAAGAAAGCTGCGGATATCGTGCAAGCCATGACCTCAAATGGGTGTGAACCAGACATTGTGACCTATGGAACCTTGATAAGCGGTTTGTGTAAAGCTGGTAGAGTTGAAGTTGCAAGTAAGCTTTTGAGGTCAATTCAGATGAAAGGGATTAATTTGACACCGCATGCTTATAATCCGGTGATTCAAGGGTTGTTTAGAAAGAGGAAAACAACAGAAGCTATAAATTTGTTTAGAGAAATGCTTGAACAGAATGAAGCTCCACCAGATGCAGTATCCTACAGAATCGTTTTCCGTGGGCTATGTAATGGAGGTGGACCAATCCGTGAAGCAGTGGACTTTCTTGTTGAGCTGTTAGAGAAAGGATTTGTACCTGAGTTTTCTTCTTTGTACATGTTGGCTGAAGGTCTTCTCACTTTGTCAATGGAAGAAACACTAGTCAAGTTAGTGAACATGGTGATGCAGAAAGCTAGATTCTCGGAGGAAGAGGTTTCAATGGTGAAAGGTTTGCTTAAAATCAGGAAATTTCAGGACGCTTTGGCCACTCTTGGCGGCGTCTTGGACAGTCGCCAGCCGAGGAGAACCTACCGGTCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

754

Amino Acids

84.55

Weight (kDa)

5.27

Isoelectric Point (pI)

37.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	138 - 278	2.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	152 - 201	3.3e-08	PPR repeat family
PPR_1	PF12854	183 - 215	1e-07	PPR repeat
PPR_2	PF13041	187 - 233	8e-11	PPR repeat family
PPR_2	PF13041	222 - 271	2.7e-09	PPR repeat family
PPR_1	PF12854	254 - 286	6.4e-07	PPR repeat
MRP-S27	PF10037	260 - 327	5e-06	Mitochondrial 28S ribosomal protein S27
PPR_2	PF13041	260 - 307	3.4e-13	PPR repeat family
PPR_long	PF17177	271 - 400	2.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	284 - 338	4.2e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	289 - 321	3.5e-12	PPR repeat
PPR_2	PF13041	293 - 342	7.4e-17	PPR repeat family
PPR	PF01535	296 - 325	4e-06	PPR repeat
TPR_24	PF23276	309 - 425	2.2e-09	Fungal tetratrico peptide repeats
PPR_3	PF13812	323 - 375	1.4e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	325 - 356	6.8e-14	PPR repeat
PPR_2	PF13041	328 - 377	1.7e-18	PPR repeat family
PPR	PF01535	331 - 361	1.1e-08	PPR repeat
PPR_1	PF12854	359 - 387	5.6e-11	PPR repeat
PPR_2	PF13041	363 - 411	1.3e-15	PPR repeat family
PPR_3	PF13812	391 - 443	3.9e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	394 - 427	2.6e-09	PPR repeat
PPR_2	PF13041	398 - 446	1.9e-18	PPR repeat family
PPR	PF01535	402 - 431	3.6e-07	PPR repeat
PPR_long	PF17177	417 - 511	2.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	429 - 462	8.6e-15	PPR repeat
PPR_2	PF13041	436 - 481	3.7e-14	PPR repeat family
PPR	PF01535	436 - 466	6.4e-08	PPR repeat
PPR_3	PF13812	458 - 513	7.9e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	465 - 497	4.7e-14	PPR repeat
PPR_2	PF13041	469 - 517	1.9e-19	PPR repeat family
PPR	PF01535	471 - 501	5.5e-10	PPR repeat
PPR_long	PF17177	491 - 609	2.1e-08	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	500 - 531	1.5e-12	PPR repeat
PPR_2	PF13041	503 - 552	9.7e-18	PPR repeat family
PPR	PF01535	506 - 535	1.2e-07	PPR repeat
PPR_3	PF13812	527 - 583	1.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	535 - 566	2.7e-06	PPR repeat
PPR_2	PF13041	542 - 587	3.7e-14	PPR repeat family
PPR_1	PF12854	569 - 599	2e-13	PPR repeat
PPR_2	PF13041	573 - 613	4.3e-07	PPR repeat family
PPR	PF01535	576 - 606	6.3e-06	PPR repeat
PPR_2	PF13041	612 - 658	5.1e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53700
fragaria_vesca	FvH4_6g14250
malus_domestica	MD04G1122700.v1.1 MD12G1138900.v1.1
prunus_persica	Prupe.6G250800_v2.0.a1
pyrus_communis	pycom12g13320
rosa_chinensis	RchiOBHm_Chr3g0467211
rosa_laevigata	RLG00000024519
rosa_multiflora	Rmu_sc0000962.1_g000073
rosa_roxburghii	Rroxscaffold_6G00413820
rosa_rugosa	Rorug03G0085700
rosa_samantha	Rh3AG134200 Rh3BG155500 Rh3CG155100 Rh3DG156300
rosa_wichuraiana	Rw3G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	471, 999, 1839
Acc36I	ACCTGC	2 cut(s)	256, 628
AccI	GTMKAC	1 cut(s)	992
AccII	CGCG	2 cut(s)	533, 1571
AccIII	TCCGGA	1 cut(s)	877
AciI	CCGC	7 cut(s)	192, 195, 1571, 1679, 1749, 1829, 2217
AclWI	GGATC	6 cut(s)	888, 974, 1180, 1193, 1213, 1593
AcoI	YGGCCR	1 cut(s)	2205
AcsI	RAATTY	6 cut(s)	23, 232, 312, 440, 1891, 2189
AcuI	CTGAAG	1 cut(s)	2088
AcyI	GRCGYC	1 cut(s)	2220
AdeI	CACNNNGTG	1 cut(s)	1406
AfaI	GTAC	7 cut(s)	352, 887, 1204, 1494, 1622, 2037, 2057
AfiI	CCNNNNNNNGG	3 cut(s)	653, 1182, 1707
AflIII	ACRYGT	2 cut(s)	888, 2058
AgeI	ACCGGT	1 cut(s)	2253
AhlI	ACTAGT	1 cut(s)	2101
Alw21I	GWGCWC	2 cut(s)	607, 1402
Alw26I	GTCTC	2 cut(s)	23, 209
Alw44I	GTGCAC	1 cut(s)	1398
AlwI	GGATC	6 cut(s)	888, 974, 1180, 1193, 1213, 1593
Aor13HI	TCCGGA	1 cut(s)	877
AoxI	GGCC	2 cut(s)	216, 2205
ApaLI	GTGCAC	1 cut(s)	1398
ApeKI	GCWGC	2 cut(s)	131, 1676
ApoI	RAATTY	6 cut(s)	23, 232, 312, 440, 1891, 2189
AseI	ATTAAT	2 cut(s)	371, 1818
AsiGI	ACCGGT	1 cut(s)	2253
Asp700I	GAANNNNTTC	2 cut(s)	264, 2073
AspS9I	GGNCC	1 cut(s)	1982
AsuC2I	CCSGG	1 cut(s)	1250
AsuHPI	GGTGA	9 cut(s)	231, 1018, 1048, 1165, 1238, 1673, 1858, 2134, 2176
AsuII	TTCGAA	1 cut(s)	393
AvaII	GGWCC	1 cut(s)	1982
BaeGI	GKGCMC	1 cut(s)	1402
BalI	TGGCCA	1 cut(s)	2207
BamHI	GGATCC	1 cut(s)	1185
BanII	GRGCYC	1 cut(s)	607
BbsI	GAAGAC	4 cut(s)	327, 680, 834, 2066
Bbv12I	GWGCWC	2 cut(s)	607, 1402
BbvI	GCAGC	2 cut(s)	143, 1663
BccI	CCATC	8 cut(s)	113, 491, 716, 742, 1252, 1427, 1480, 1532
BcgI	CGANNNNNNTGC	2 cut(s)	365, 399
BciVI	GTATCC	1 cut(s)	1951
BclI	TGATCA	3 cut(s)	585, 1060, 1113
BcnI	CCSGG	1 cut(s)	1250
BcoDI	GTCTC	2 cut(s)	23, 209
BcuI	ACTAGT	1 cut(s)	2101
BfaI	CTAG	8 cut(s)	278, 648, 1074, 1239, 1352, 1458, 2102, 2136
BfmI	CTRYAG	2 cut(s)	1651, 1945
BfuAI	ACCTGC	2 cut(s)	256, 628
BfuI	GTATCC	1 cut(s)	1951
BisI	GCNGC	5 cut(s)	132, 195, 1572, 1677, 2218
BlpI	GCTNAGC	1 cut(s)	1575
BlsI	GCNGC	5 cut(s)	133, 196, 1573, 1678, 2219
Bme1390I	CCNGG	1 cut(s)	1250
Bme18I	GGWCC	1 cut(s)	1982
BmgT120I	GGNCC	1 cut(s)	1982
BmiI	GGNNCC	2 cut(s)	1187, 1738
BmrFI	CCNGG	1 cut(s)	1250
BmsI	GCATC	4 cut(s)	329, 951, 1924, 2115
BpiI	GAAGAC	4 cut(s)	327, 680, 834, 2066
BplI	GAGNNNNNCTC	2 cut(s)	370, 402
Bpu1102I	GCTNAGC	1 cut(s)	1575
Bpu14I	TTCGAA	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	30
BpuMI	CCSGG	1 cut(s)	1250
Bsa29I	ATCGAT	1 cut(s)	1536
BsaBI	GATNNNNATC	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	2220
BsaJI	CCNNGG	4 cut(s)	1222, 1467, 1960, 2240
BsaWI	WCCGGW	4 cut(s)	474, 877, 1843, 2253
Bsc4I	CCNNNNNNNGG	3 cut(s)	653, 1182, 1707
Bse118I	RCCGGY	1 cut(s)	2253
Bse8I	GATNNNNATC	1 cut(s)	371
BseAI	TCCGGA	1 cut(s)	877
BseCI	ATCGAT	1 cut(s)	1536
BseDI	CCNNGG	4 cut(s)	1222, 1467, 1960, 2240
BseGI	GGATG	5 cut(s)	435, 483, 727, 961, 1295
BseJI	GATNNNNATC	1 cut(s)	371
BseLI	CCNNNNNNNGG	3 cut(s)	653, 1182, 1707
BseMII	CTCAG	4 cut(s)	141, 401, 1589, 2031
BseRI	GAGGAG	7 cut(s)	81, 111, 130, 1294, 1484, 1671, 2257
BseSI	GKGCMC	1 cut(s)	1402
BseXI	GCAGC	2 cut(s)	143, 1663
Bsh1236I	CGCG	2 cut(s)	533, 1571
BshFI	GGCC	2 cut(s)	218, 2207
BshTI	ACCGGT	1 cut(s)	2253
BshVI	ATCGAT	1 cut(s)	1536
BsiHKAI	GWGCWC	2 cut(s)	607, 1402
BsiSI	CCGG	5 cut(s)	475, 878, 1249, 1844, 2254
BslFI	GGGAC	1 cut(s)	728
BslI	CCNNNNNNNGG	3 cut(s)	653, 1182, 1707
BsmAI	GTCTC	2 cut(s)	23, 209
BsmBI	CGTCTC	1 cut(s)	209
BsmFI	GGGAC	1 cut(s)	728
BsnI	GGCC	2 cut(s)	218, 2207
Bsp119I	TTCGAA	1 cut(s)	393
Bsp1286I	GDGCHC	2 cut(s)	607, 1402
Bsp13I	TCCGGA	1 cut(s)	877
Bsp1407I	TGTACA	2 cut(s)	1202, 2055
Bsp143I	GATC	8 cut(s)	585, 880, 979, 1060, 1113, 1185, 1218, 1585
Bsp1720I	GCTNAGC	1 cut(s)	1575
BspACI	CCGC	7 cut(s)	192, 195, 1571, 1679, 1749, 1829, 2217
BspANI	GGCC	2 cut(s)	218, 2207
BspCNI	CTCAG	4 cut(s)	140, 400, 1588, 2032
BspDI	ATCGAT	1 cut(s)	1536
BspEI	TCCGGA	1 cut(s)	877
BspFNI	CGCG	2 cut(s)	533, 1571
BspLI	GGNNCC	2 cut(s)	1187, 1738
BspMAI	CTGCAG	1 cut(s)	1655
BspMI	ACCTGC	2 cut(s)	256, 628
BspPI	GGATC	6 cut(s)	888, 974, 1180, 1193, 1213, 1593
BspT104I	TTCGAA	1 cut(s)	393
BsrFI	RCCGGY	1 cut(s)	2253
BsrGI	TGTACA	2 cut(s)	1202, 2055
BssAI	RCCGGY	1 cut(s)	2253
BssECI	CCNNGG	4 cut(s)	1222, 1467, 1960, 2240
BssMI	GATC	8 cut(s)	585, 880, 979, 1060, 1113, 1185, 1218, 1585
BssNAI	GTATAC	1 cut(s)	993
BssNI	GRCGYC	1 cut(s)	2220
BssT1I	CCWWGG	1 cut(s)	1222
Bst1107I	GTATAC	1 cut(s)	993
Bst4CI	ACNGT	4 cut(s)	656, 688, 1096, 2231
Bst6I	CTCTTC	5 cut(s)	16, 255, 323, 1266, 2145
BstACI	GRCGYC	1 cut(s)	2220
BstAUI	TGTACA	2 cut(s)	1202, 2055
BstBI	TTCGAA	1 cut(s)	393
BstC8I	GCNNGC	7 cut(s)	179, 939, 1161, 1556, 1692, 1833, 2237
BstDEI	CTNAG	6 cut(s)	127, 222, 387, 614, 1575, 2040
BstDSI	CCRYGG	1 cut(s)	1960
BstF5I	GGATG	5 cut(s)	435, 483, 727, 961, 1295
BstFNI	CGCG	2 cut(s)	533, 1571
BstKTI	GATC	8 cut(s)	588, 883, 982, 1063, 1116, 1188, 1221, 1588
BstMAI	GTCTC	2 cut(s)	23, 209
BstMBI	GATC	8 cut(s)	585, 880, 979, 1060, 1113, 1185, 1218, 1585
BstMWI	GCNNNNNNNGC	1 cut(s)	934
BstNSI	RCATGY	5 cut(s)	932, 941, 1372, 1835, 2062
BstSCI	CCNGG	1 cut(s)	1248
BstSFI	CTRYAG	2 cut(s)	1651, 1945
BstSLI	GKGCMC	1 cut(s)	1402
BstUI	CGCG	2 cut(s)	533, 1571
BstV1I	GCAGC	2 cut(s)	143, 1663
BstV2I	GAAGAC	4 cut(s)	327, 680, 834, 2066
BstX2I	RGATCY	1 cut(s)	1185
BstYI	RGATCY	1 cut(s)	1185
BstZ17I	GTATAC	1 cut(s)	993
Bsu15I	ATCGAT	1 cut(s)	1536
BsuI	GTATCC	1 cut(s)	1951
BsuRI	GGCC	2 cut(s)	218, 2207
BsuTUI	ATCGAT	1 cut(s)	1536
BtgI	CCRYGG	1 cut(s)	1960
BtgZI	GCGATG	1 cut(s)	1271
BtsCI	GGATG	5 cut(s)	435, 483, 727, 961, 1295
BtsI	GCAGTG	2 cut(s)	1053, 2004
BtsIMutI	CAGTG	2 cut(s)	1053, 2004
BveI	ACCTGC	2 cut(s)	256, 628
Cac8I	GCNNGC	7 cut(s)	179, 939, 1161, 1556, 1692, 1833, 2237
Cfr10I	RCCGGY	1 cut(s)	2253
Cfr13I	GGNCC	1 cut(s)	1982
ClaI	ATCGAT	1 cut(s)	1536
CseI	GACGC	4 cut(s)	839, 1577, 2207, 2209
Csp6I	GTAC	7 cut(s)	351, 886, 1203, 1493, 1621, 2036, 2056
CspAI	ACCGGT	1 cut(s)	2253
CviQI	GTAC	7 cut(s)	351, 886, 1203, 1493, 1621, 2036, 2056
DdeI	CTNAG	6 cut(s)	127, 222, 387, 614, 1575, 2040
DpnI	GATC	8 cut(s)	587, 882, 981, 1062, 1115, 1187, 1220, 1587
DpnII	GATC	8 cut(s)	585, 880, 979, 1060, 1113, 1185, 1218, 1585
DraIII	CACNNNGTG	1 cut(s)	1406
EaeI	YGGCCR	1 cut(s)	2205
Eam1104I	CTCTTC	5 cut(s)	16, 255, 323, 1266, 2145
EarI	CTCTTC	5 cut(s)	16, 255, 323, 1266, 2145
EciI	GGCGGA	1 cut(s)	181
Ecl136II	GAGCTC	1 cut(s)	605
Eco130I	CCWWGG	1 cut(s)	1222
Eco24I	GRGCYC	1 cut(s)	607
Eco32I	GATATC	1 cut(s)	1684
Eco47I	GGWCC	1 cut(s)	1982
Eco53kI	GAGCTC	1 cut(s)	605
Eco57I	CTGAAG	1 cut(s)	2088
EcoICRI	GAGCTC	1 cut(s)	605
EcoRI	GAATTC	1 cut(s)	440
EcoRV	GATATC	1 cut(s)	1684
EcoT14I	CCWWGG	1 cut(s)	1222
EcoT38I	GRGCYC	1 cut(s)	607
ErhI	CCWWGG	1 cut(s)	1222
Esp3I	CGTCTC	1 cut(s)	209
FalI	AAGNNNNNCTT	4 cut(s)	1173, 1205, 2160, 2192
FaqI	GGGAC	1 cut(s)	728
FbaI	TGATCA	3 cut(s)	585, 1060, 1113
FblI	GTMKAC	1 cut(s)	992
Fnu4HI	GCNGC	5 cut(s)	132, 195, 1572, 1677, 2218
FokI	GGATG	5 cut(s)	442, 490, 734, 968, 1302
FriOI	GRGCYC	1 cut(s)	607
Fsp4HI	GCNGC	5 cut(s)	132, 195, 1572, 1677, 2218
FspBI	CTAG	8 cut(s)	278, 648, 1074, 1239, 1352, 1458, 2102, 2136
GluI	GCNGC	5 cut(s)	132, 195, 1572, 1677, 2218
HaeIII	GGCC	2 cut(s)	218, 2207
HapII	CCGG	5 cut(s)	475, 878, 1249, 1844, 2254
HgaI	GACGC	4 cut(s)	839, 1577, 2207, 2209
Hin1I	GRCGYC	1 cut(s)	2220
HindIII	AAGCTT	4 cut(s)	155, 591, 1025, 1787
HpaII	CCGG	5 cut(s)	475, 878, 1249, 1844, 2254
HphI	GGTGA	9 cut(s)	231, 1018, 1048, 1165, 1238, 1673, 1858, 2134, 2176
Hpy166II	GTNNAC	9 cut(s)	888, 993, 1308, 1400, 1623, 1715, 1982, 2002, 2116
Hpy188I	TCNGA	6 cut(s)	510, 1065, 1089, 1365, 1806, 2146
Hpy8I	GTNNAC	9 cut(s)	888, 993, 1308, 1400, 1623, 1715, 1982, 2002, 2116
HpyCH4III	ACNGT	4 cut(s)	656, 688, 1096, 2231
HpyCH4IV	ACGT	5 cut(s)	572, 890, 899, 1121, 1197
HpyCH4V	TGCA	9 cut(s)	400, 694, 1400, 1443, 1653, 1690, 1781, 1937, 2128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	934
HpyF3I	CTNAG	6 cut(s)	127, 222, 387, 614, 1575, 2040
HpySE526I	ACGT	5 cut(s)	572, 890, 899, 1121, 1197
Hsp92I	GRCGYC	1 cut(s)	2220
Kpn2I	TCCGGA	1 cut(s)	877
Ksp22I	TGATCA	3 cut(s)	585, 1060, 1113
Kzo9I	GATC	8 cut(s)	585, 880, 979, 1060, 1113, 1185, 1218, 1585
LmnI	GCTCC	5 cut(s)	725, 1156, 1281, 1343, 1930
Lsp1109I	GCAGC	2 cut(s)	143, 1663
LweI	GCATC	4 cut(s)	329, 951, 1924, 2115
MaeI	CTAG	8 cut(s)	278, 648, 1074, 1239, 1352, 1458, 2102, 2136
MaeII	ACGT	5 cut(s)	572, 890, 899, 1121, 1197
MaeIII	GTNAC	6 cut(s)	52, 650, 1096, 1516, 1661, 1726
MalI	GATC	8 cut(s)	587, 882, 981, 1062, 1115, 1187, 1220, 1587
MboI	GATC	8 cut(s)	585, 880, 979, 1060, 1113, 1185, 1218, 1585
MflI	RGATCY	1 cut(s)	1185
MhlI	GDGCHC	2 cut(s)	607, 1402
MlsI	TGGCCA	1 cut(s)	2207
MluNI	TGGCCA	1 cut(s)	2207
MlyI	GAGTC	2 cut(s)	158, 831
MmeI	TCCRAC	1 cut(s)	615
Mox20I	TGGCCA	1 cut(s)	2207
MroI	TCCGGA	1 cut(s)	877
MroXI	GAANNNNTTC	2 cut(s)	264, 2073
MscI	TGGCCA	1 cut(s)	2207
MslI	CAYNNNNRTG	1 cut(s)	2123
Msp20I	TGGCCA	1 cut(s)	2207
MspI	CCGG	5 cut(s)	475, 878, 1249, 1844, 2254
MspR9I	CCNGG	1 cut(s)	1250
MvnI	CGCG	2 cut(s)	533, 1571
MwoI	GCNNNNNNNGC	1 cut(s)	934
NciI	CCSGG	1 cut(s)	1250
NdeII	GATC	8 cut(s)	585, 880, 979, 1060, 1113, 1185, 1218, 1585
NlaIV	GGNNCC	2 cut(s)	1187, 1738
NmeAIII	GCCGAG	2 cut(s)	1492, 2265
NmuCI	GTSAC	2 cut(s)	1661, 1726
NspI	RCATGY	5 cut(s)	932, 941, 1372, 1835, 2062
NspV	TTCGAA	1 cut(s)	393
PaeI	GCATGC	2 cut(s)	941, 1835
PciI	ACATGT	1 cut(s)	2058
PcsI	WCGNNNNNNNCGW	1 cut(s)	896
PdmI	GAANNNNTTC	2 cut(s)	264, 2073
PfeI	GAWTC	8 cut(s)	188, 265, 484, 1135, 1243, 1849, 1950, 2139
PinAI	ACCGGT	1 cut(s)	2253
PkrI	GCNGC	5 cut(s)	133, 196, 1573, 1678, 2219
PleI	GAGTC	2 cut(s)	158, 830
PpsI	GAGTC	2 cut(s)	158, 830
PscI	ACATGT	1 cut(s)	2058
PshBI	ATTAAT	2 cut(s)	371, 1818
PsiI	TTATAA	3 cut(s)	471, 999, 1839
Psp124BI	GAGCTC	1 cut(s)	607
PspN4I	GGNNCC	2 cut(s)	1187, 1738
PspPI	GGNCC	1 cut(s)	1982
PstI	CTGCAG	1 cut(s)	1655
PsuI	RGATCY	1 cut(s)	1185
RsaI	GTAC	7 cut(s)	352, 887, 1204, 1494, 1622, 2037, 2057
RsaNI	GTAC	7 cut(s)	351, 886, 1203, 1493, 1621, 2036, 2056
RseI	CAYNNNNRTG	1 cut(s)	2123
SacI	GAGCTC	1 cut(s)	607
SatI	GCNGC	5 cut(s)	132, 195, 1572, 1677, 2218
Sau3AI	GATC	8 cut(s)	585, 880, 979, 1060, 1113, 1185, 1218, 1585
Sau96I	GGNCC	1 cut(s)	1982
SchI	GAGTC	2 cut(s)	158, 831
ScrFI	CCNGG	1 cut(s)	1250
SduI	GDGCHC	2 cut(s)	607, 1402
SfaNI	GCATC	4 cut(s)	329, 951, 1924, 2115
SfcI	CTRYAG	2 cut(s)	1651, 1945
SfuI	TTCGAA	1 cut(s)	393
SinI	GGWCC	1 cut(s)	1982
SmiMI	CAYNNNNRTG	1 cut(s)	2123
SmlI	CTYRAG	1 cut(s)	45
SmoI	CTYRAG	1 cut(s)	45
SpeI	ACTAGT	1 cut(s)	2101
SphI	GCATGC	2 cut(s)	941, 1835
SsiI	CCGC	7 cut(s)	192, 195, 1571, 1679, 1749, 1829, 2217
SspMI	CTAG	8 cut(s)	278, 648, 1074, 1239, 1352, 1458, 2102, 2136
SstI	GAGCTC	1 cut(s)	607
StyD4I	CCNGG	1 cut(s)	1248
StyI	CCWWGG	1 cut(s)	1222
TaaI	ACNGT	4 cut(s)	656, 688, 1096, 2231
TaiI	ACGT	5 cut(s)	575, 893, 902, 1124, 1200
TaqI	TCGA	6 cut(s)	162, 375, 393, 825, 1143, 1536
TaqII	GACCGA	1 cut(s)	273
TatI	WGTACW	5 cut(s)	885, 1202, 1492, 1620, 2055
TauI	GCSGC	3 cut(s)	197, 1574, 2220
TfiI	GAWTC	8 cut(s)	188, 265, 484, 1135, 1243, 1849, 1950, 2139
TscAI	CASTG	2 cut(s)	1053, 2004
TseFI	GTSAC	2 cut(s)	1661, 1726
TseI	GCWGC	2 cut(s)	131, 1676
Tsp45I	GTSAC	2 cut(s)	1661, 1726
TspDTI	ATGAA	8 cut(s)	320, 341, 756, 788, 832, 1371, 1823, 1935
TspGWI	ACGGA	5 cut(s)	161, 1169, 1417, 1949, 1979
TspRI	CASTG	2 cut(s)	1053, 2004
VneI	GTGCAC	1 cut(s)	1398
VpaK11BI	GGWCC	1 cut(s)	1982
VspI	ATTAAT	2 cut(s)	371, 1818
XapI	RAATTY	6 cut(s)	23, 232, 312, 440, 1891, 2189
XceI	RCATGY	5 cut(s)	932, 941, 1372, 1835, 2062
XcmI	CCANNNNNNNNNTGG	1 cut(s)	343
XmiI	GTMKAC	1 cut(s)	992
XmnI	GAANNNNTTC	2 cut(s)	264, 2073
XspI	CTAG	8 cut(s)	278, 648, 1074, 1239, 1352, 1458, 2102, 2136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.