Rh3BG155500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0015205
Physical Location & Seq
Reverse (-)
13254597 .. 13256897
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG155500.1

Sequence Viewer

Length: 894 bp
ATGGCTTCCTCTTTCTGCACCCGATGCTATTCCTGGTCTCTCACACCCACCATAATCCCAACACCTCCACCTCATCGACCCTTCACTTCCCTCTCCTTCCCTCGCCATGAACGCCTCGTCGTTCATTCTTCACTTTCCTATTCTACCCCAATTTCTACTACCCATCATCCCCTCCCTCAGGACTTCACCCCCCAGCAGCTCCTCGACTCCCTCCGCCGCCAAAACGACGAGTCGTCCGCGCTCCGCCTCTTCGACTGGGCCTCCAAGCAGCCCAGTTTCGCGCCCAACCCCACCATCTACGAGGAGGTGCTCGCCAAGCTCGGAAAGGTCGGGTCTTTCGAGTCGATGAGGGACATCTTGGATGAAATGAAGCACAACGGGTGCCTCAGTAAAGGTAGAACTGAGGTTGCGAGTAGACTCCTAAGAAGTTTGCAGATGAAAGGGTTGGTTCCGACTCCACATGCTTATAACCCTGTGATACAAGCACTATTTAAACGAAAGAGAACAACCGAAGCGATGAGGCTTGTTCGAGAAATGATGGAAAAAGCTGATCCTCCAGATGCTATAACATTTAAGATTGTCTTTCGTGGGCTTTGTAATGGTGGAGGACCAATTGGAGAAGCAGTTGATTTTGCGATTGAGATGATGGAGAAAGGGCACTTACCAGAATTTTCATCATTTTCTATGCTGGCTGAAGGACTATACGCTTTATCCATGGAGGATACCCTGATTAAGCTTGTAGATATCATCATGGAGAAAGCAAGAGTTTCAGACAGTGAAGCTTCAATGATAAGGGGTTTCCTCAAAATCCGAAAATTTAAAGATGCACTGGCCACTCTAGGTGGTATTTTGAATAGCCAAAGGCCTAGAAAATCTTATCGGACCAGAAATTAA

Protein Analysis

297

Amino Acids

33.49

Weight (kDa)

9.44

Isoelectric Point (pI)

39.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 154 - 200 6.2e-12 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G53700
fragaria_vesca FvH4_6g14250
malus_domestica MD04G1122700.v1.1 MD12G1138900.v1.1
prunus_persica Prupe.6G250800_v2.0.a1
pyrus_communis pycom12g13320
rosa_chinensis RchiOBHm_Chr3g0467211
rosa_laevigata RLG00000024519
rosa_multiflora Rmu_sc0000962.1_g000073
rosa_roxburghii Rroxscaffold_6G00413820
rosa_rugosa Rorug03G0085700
rosa_samantha Rh3AG134200 Rh3BG155500 Rh3CG155100 Rh3DG156300
rosa_wichuraiana Rw3G012700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 468
AccB1I GGYRCC 1 cut(s) 381
AccI GTMKAC 1 cut(s) 415
AccII CGCG 2 cut(s) 239, 281
AciI CCGC 4 cut(s) 214, 217, 237, 244
AclWI GGATC 1 cut(s) 545
AcoI YGGCCR 1 cut(s) 831
AcsI RAATTY 2 cut(s) 668, 815
AcuI CTGAAG 1 cut(s) 714
AfiI CCNNNNNNNGG 1 cut(s) 178
AgsI TTSAA 2 cut(s) 786, 853
AhdI GACNNNNNGTC 1 cut(s) 232
AjnI CCWGG 1 cut(s) 32
AluBI AGCT 5 cut(s) 199, 319, 548, 736, 782
AluI AGCT 5 cut(s) 199, 319, 548, 736, 782
Alw21I GWGCWC 1 cut(s) 312
Alw26I GTCTC 1 cut(s) 42
AlwI GGATC 1 cut(s) 545
AoxI GGCC 3 cut(s) 258, 831, 863
ApeKI GCWGC 2 cut(s) 196, 268
ApoI RAATTY 2 cut(s) 668, 815
AspLEI GCGC 2 cut(s) 241, 283
AspS9I GGNCC 3 cut(s) 258, 608, 882
AsuHPI GGTGA 1 cut(s) 178
AvaII GGWCC 2 cut(s) 608, 882
AxyI CCTNAGG 1 cut(s) 177
BaeGI GKGCMC 1 cut(s) 660
BalI TGGCCA 1 cut(s) 833
BanI GGYRCC 1 cut(s) 381
Bbv12I GWGCWC 1 cut(s) 312
BbvI GCAGC 2 cut(s) 208, 280
BccI CCATC 4 cut(s) 171, 302, 532, 640
BciT130I CCWGG 1 cut(s) 34
BciVI GTATCC 1 cut(s) 715
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 2 cut(s) 839, 867
BfuI GTATCC 1 cut(s) 715
BisI GCNGC 3 cut(s) 197, 217, 269
BlsI GCNGC 3 cut(s) 198, 218, 270
Bme1390I CCNGG 1 cut(s) 34
Bme18I GGWCC 2 cut(s) 608, 882
BmeRI GACNNNNNGTC 1 cut(s) 232
BmgT120I GGNCC 3 cut(s) 258, 608, 882
BmiI GGNNCC 2 cut(s) 383, 450
BmrFI CCNGG 1 cut(s) 34
BmrI ACTGGG 2 cut(s) 265, 267
BmsI GCATC 3 cut(s) 14, 550, 814
BmuI ACTGGG 2 cut(s) 265, 267
BpmI CTGGAG 1 cut(s) 540
BsaI GGTCTC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 714
BsaXI ACNNNNNCTCC 4 cut(s) 245, 275, 609, 639
Bsc4I CCNNNNNNNGG 1 cut(s) 178
Bse1I ACTGG 3 cut(s) 260, 273, 834
Bse21I CCTNAGG 1 cut(s) 177
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 1 cut(s) 714
BseGI GGATG 2 cut(s) 166, 367
BseLI CCNNNNNNNGG 1 cut(s) 178
BseMII CTCAG 3 cut(s) 191, 393, 400
BseNI ACTGG 3 cut(s) 260, 273, 834
BseRI GAGGAG 2 cut(s) 191, 317
BseSI GKGCMC 1 cut(s) 660
BseXI GCAGC 2 cut(s) 208, 280
BseYI CCCAGC 1 cut(s) 192
Bsh1236I CGCG 2 cut(s) 239, 281
BshFI GGCC 3 cut(s) 260, 833, 865
BshNI GGYRCC 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 312
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 1 cut(s) 178
BsmAI GTCTC 1 cut(s) 42
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 3 cut(s) 260, 833, 865
Bso31I GGTCTC 1 cut(s) 42
Bsp1286I GDGCHC 2 cut(s) 312, 660
Bsp143I GATC 1 cut(s) 550
Bsp19I CCATGG 1 cut(s) 714
BspACI CCGC 4 cut(s) 214, 217, 237, 244
BspANI GGCC 3 cut(s) 260, 833, 865
BspCNI CTCAG 3 cut(s) 190, 394, 399
BspFNI CGCG 2 cut(s) 239, 281
BspLI GGNNCC 2 cut(s) 383, 450
BspPI GGATC 1 cut(s) 545
BspT107I GGYRCC 1 cut(s) 381
BspTNI GGTCTC 1 cut(s) 42
BsrI ACTGG 3 cut(s) 260, 273, 834
BssECI CCNNGG 1 cut(s) 714
BssMI GATC 1 cut(s) 550
BssT1I CCWWGG 1 cut(s) 714
Bst2UI CCWGG 1 cut(s) 34
Bst4CI ACNGT 1 cut(s) 776
Bst6I CTCTTC 1 cut(s) 254
BstAPI GCANNNNNTGC 1 cut(s) 24
BstC8I GCNNGC 2 cut(s) 312, 690
BstDEI CTNAG 4 cut(s) 177, 386, 402, 422
BstDSI CCRYGG 1 cut(s) 714
BstENI CCTNNNNNAGG 1 cut(s) 176
BstF5I GGATG 2 cut(s) 166, 367
BstFNI CGCG 2 cut(s) 239, 281
BstHHI GCGC 2 cut(s) 241, 283
BstKTI GATC 1 cut(s) 553
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 1 cut(s) 550
BstMWI GCNNNNNNNGC 3 cut(s) 24, 111, 316
BstNI CCWGG 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 464
BstSCI CCNGG 1 cut(s) 32
BstSLI GKGCMC 1 cut(s) 660
BstUI CGCG 2 cut(s) 239, 281
BstV1I GCAGC 2 cut(s) 208, 280
Bsu36I CCTNAGG 1 cut(s) 177
BsuI GTATCC 1 cut(s) 715
BsuRI GGCC 3 cut(s) 260, 833, 865
BtgI CCRYGG 1 cut(s) 714
BtgZI GCGATG 1 cut(s) 530
BtsCI GGATG 2 cut(s) 166, 367
BtsIMutI CAGTG 2 cut(s) 781, 827
Cac8I GCNNGC 2 cut(s) 312, 690
CfoI GCGC 2 cut(s) 241, 283
Cfr13I GGNCC 3 cut(s) 258, 608, 882
CviAII CATG 4 cut(s) 107, 461, 715, 751
DdeI CTNAG 4 cut(s) 177, 386, 402, 422
DpnI GATC 1 cut(s) 552
DpnII GATC 1 cut(s) 550
DraI TTTAAA 2 cut(s) 493, 820
DriI GACNNNNNGTC 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 831
Eam1104I CTCTTC 1 cut(s) 254
Eam1105I GACNNNNNGTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 254
EciI GGCGGA 2 cut(s) 203, 233
Eco130I CCWWGG 1 cut(s) 714
Eco147I AGGCCT 1 cut(s) 865
Eco31I GGTCTC 1 cut(s) 42
Eco32I GATATC 1 cut(s) 745
Eco47I GGWCC 2 cut(s) 608, 882
Eco57I CTGAAG 1 cut(s) 714
Eco81I CCTNAGG 1 cut(s) 177
EcoNI CCTNNNNNAGG 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 32
EcoRV GATATC 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 714
ErhI CCWWGG 1 cut(s) 714
FaeI CATG 4 cut(s) 110, 464, 718, 754
FaiI YATR 9 cut(s) 53, 108, 462, 468, 566, 686, 703, 716, 752
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FaqI GGGAC 1 cut(s) 365
FatI CATG 4 cut(s) 106, 460, 714, 750
FblI GTMKAC 1 cut(s) 415
Fnu4HI GCNGC 3 cut(s) 197, 217, 269
FokI GGATG 2 cut(s) 153, 374
Fsp4HI GCNGC 3 cut(s) 197, 217, 269
FspBI CTAG 2 cut(s) 839, 867
GlaI GCGC 2 cut(s) 240, 282
GluI GCNGC 3 cut(s) 197, 217, 269
GsaI CCCAGC 1 cut(s) 196
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 3 cut(s) 260, 833, 865
HhaI GCGC 2 cut(s) 241, 283
Hin1II CATG 4 cut(s) 110, 464, 718, 754
Hin6I GCGC 2 cut(s) 239, 281
HinP1I GCGC 2 cut(s) 239, 281
HindIII AAGCTT 2 cut(s) 734, 780
HinfI GANTC 5 cut(s) 206, 230, 341, 417, 454
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 5 cut(s) 323, 453, 772, 812, 882
Hpy188III TCNNGA 3 cut(s) 179, 530, 557
Hpy8I GTNNAC 1 cut(s) 416
Hpy99I CGWCG 2 cut(s) 122, 230
HpyAV CCTTC 3 cut(s) 91, 106, 689
HpyCH4III ACNGT 1 cut(s) 776
HpyCH4V TGCA 3 cut(s) 18, 433, 827
HpyF10VI GCNNNNNNNGC 3 cut(s) 24, 111, 316
HpyF3I CTNAG 4 cut(s) 177, 386, 402, 422
Hsp92II CATG 4 cut(s) 110, 464, 718, 754
HspAI GCGC 2 cut(s) 239, 281
Kzo9I GATC 1 cut(s) 550
LmnI GCTCC 2 cut(s) 204, 246
Lsp1109I GCAGC 2 cut(s) 208, 280
LweI GCATC 3 cut(s) 14, 550, 814
MaeI CTAG 2 cut(s) 839, 867
MalI GATC 1 cut(s) 552
MboI GATC 1 cut(s) 550
MboII GAAGA 2 cut(s) 120, 241
MfeI CAATTG 1 cut(s) 612
MhlI GDGCHC 2 cut(s) 312, 660
MlsI TGGCCA 1 cut(s) 833
MluCI AATT 5 cut(s) 150, 612, 668, 815, 889
MluNI TGGCCA 1 cut(s) 833
MlyI GAGTC 5 cut(s) 200, 239, 350, 411, 448
MmeI TCCRAC 1 cut(s) 476
Mox20I TGGCCA 1 cut(s) 833
MscI TGGCCA 1 cut(s) 833
MseI TTAA 5 cut(s) 492, 573, 732, 819, 892
Msp20I TGGCCA 1 cut(s) 833
MspR9I CCNGG 1 cut(s) 34
MunI CAATTG 1 cut(s) 612
MvaI CCWGG 1 cut(s) 34
MvnI CGCG 2 cut(s) 239, 281
MwoI GCNNNNNNNGC 3 cut(s) 24, 111, 316
NcoI CCATGG 1 cut(s) 714
NdeII GATC 1 cut(s) 550
NlaIII CATG 4 cut(s) 110, 464, 718, 754
NlaIV GGNNCC 2 cut(s) 383, 450
NspI RCATGY 1 cut(s) 464
PceI AGGCCT 1 cut(s) 865
PcsI WCGNNNNNNNCGW 1 cut(s) 336
PkrI GCNGC 3 cut(s) 198, 218, 270
PleI GAGTC 5 cut(s) 200, 238, 349, 411, 448
PpsI GAGTC 5 cut(s) 200, 238, 349, 411, 448
PsiI TTATAA 1 cut(s) 468
Psp6I CCWGG 1 cut(s) 32
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 2 cut(s) 383, 450
PspPI GGNCC 3 cut(s) 258, 608, 882
SaqAI TTAA 5 cut(s) 492, 573, 732, 819, 892
SatI GCNGC 3 cut(s) 197, 217, 269
Sau3AI GATC 1 cut(s) 550
Sau96I GGNCC 3 cut(s) 258, 608, 882
SchI GAGTC 5 cut(s) 200, 239, 350, 411, 448
ScrFI CCNGG 1 cut(s) 34
SduI GDGCHC 2 cut(s) 312, 660
SfaNI GCATC 3 cut(s) 14, 550, 814
SinI GGWCC 2 cut(s) 608, 882
Sse9I AATT 5 cut(s) 150, 612, 668, 815, 889
SseBI AGGCCT 1 cut(s) 865
SsiI CCGC 4 cut(s) 214, 217, 237, 244
SspMI CTAG 2 cut(s) 839, 867
StuI AGGCCT 1 cut(s) 865
StyD4I CCNGG 1 cut(s) 32
StyI CCWWGG 1 cut(s) 714
TaaI ACNGT 1 cut(s) 776
TaqI TCGA 6 cut(s) 76, 204, 252, 339, 344, 529
TasI AATT 5 cut(s) 150, 612, 668, 815, 889
TauI GCSGC 1 cut(s) 219
Tru1I TTAA 5 cut(s) 492, 573, 732, 819, 892
Tru9I TTAA 5 cut(s) 492, 573, 732, 819, 892
TscAI CASTG 2 cut(s) 781, 834
TseI GCWGC 2 cut(s) 196, 268
TspDTI ATGAA 6 cut(s) 113, 123, 378, 383, 452, 663
TspRI CASTG 2 cut(s) 781, 834
VpaK11BI GGWCC 2 cut(s) 608, 882
XagI CCTNNNNNAGG 1 cut(s) 176
XapI RAATTY 2 cut(s) 668, 815
XceI RCATGY 1 cut(s) 464
XmiI GTMKAC 1 cut(s) 415
XspI CTAG 2 cut(s) 839, 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.