Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015205

Physical Location & Seq

Genomic Coordinates Reverse (-)

13445392 .. 13448280

Gene Structure 2889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ43319

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1998 bp

ATGGCTTCCTCTTTCTGCACCCGATGCTATTCCTGGTCTCTCACACCCACCATAATCCCAACACCTCCACCTCATCGACCCTTCACTTCCCTCTCCTTCCCTCGCCATGAACGCCTCGTCGTTCATTCTTCACTTTCCTATTCTACCCCAATTTCTACTACCCATCATCCCCTCCCTCAGGACTTCACCCCCCAGCAGCTCCTCGACTCCCTCCGCCGCCAAAACGACGAGTCGTCCGCGCTCCGCCTCTTCGACTGGGCCTCCAAGCAGCCCAGTTTCGCGCCCAACCCCACCATCTACGAGGAGGTGCTCGCCAAGCTCGGAAAGGCTTTGTGTAGAGCTCATCAGATTAGGCCTGCCCTTTTGTTGATGGAGGAGATGGGGAACTATGGTTTGAAGCCTGATGAGAAGACTTTTACCACCATAATGCAGGGTTATATTGAGGAGGGTGAGATGAAAGGTGCATTGAGAATTAGGGAGCAGATGGTAGATTATGGTTGCCATTGTAGTAATGTGACTGTTAATGTTTTGGTTAATGGGTTTTGCAAGGAGGGTAGGGTTGATGAAGCGTTTAGTTTTATTGAGAAGATGGCAAAGGAGGGGTTTTCTCCTGATCAGTATACGTTTAATACGTTGGTGAAGGGTTTGTGCAGGGTGGGGCATGTTAAGCATGCTTTGGAGGTTATGGACGTGATGTTGCAAGAGGGGTTTGATCTGGATATCTATACGTATAACTCTTTGGTTTCAGGGTTGTGTAAGTTGGGTGAAATTGAAGAGGCAGTGGACATTCTTGATCAGATGGTTTCGAGGGACTGTTCCCCAAATACTGTCACCTATAATACTCTGATTAGCACATTGTGCAAGGAGAACCGGGTTGAGGAGGCTACTAAGCTTGCGCGTGTACTTACTAGCAAGGGAATCATACCTGATGTTTGTACTGTCAATTCACTGATTCAAGGTCTCTGCTTGAACAGTAATCATAAAGTTGCTATGGAACTGTTTGAGGAGATGAAGATGAAAGGGTGTCAGCCTGATGGGTTTACTTACAGTTTGCTTATTGATAGCTACTGTTCTAGAGGGAAGCTGGAAGAGGCTTTGAGCTTGCTGAAAGATATGGAGTCGAGCAGCTGTCCGCGAAATGCAGTAATATACAATACTCTGATTGATGGGTTCTGCAAAAACAAGAGGATTGAAGATGCAGAGGAAATTTTTGATCAGATGGAACTGCAGGGTATTTCAAGAAATTCAGTGACCTATAACACCCTTATTGATGGCCTTTGCCAGAGTAGGAGGGTGGAGGATGCTTCTCAACTCATGGATCAGATGATAATGGAAGGCTTGAAGCCTGACAAGTTCACCTACAATTCGCTTCTCACGTATTTCTGTAGGTCGGGGGATATTAAGAAGGCAGCCGATATTGTTCAAAACATGACTTCAAATGGGTGTGAACCAGACATTGTCACTTATGGGACCCTAATTCAGGGGTTATGTAAGGCAGGTAGAACTGAGGTTGCGAGTAGACTCCTAAGAAGTTTGCAGATGAAAGGGTTGGTTCCGACTCCACATGCTTATAACCCTGTGATACAAGCACTATTTAAACGAAAGAGAACAACCGAAGCGATGAGGCTTGTTCGAGAAATGATGGAAAAAGCTGATCCTCCAGATGCTATAACATTTAAGATTGTCTTTCGTGGGCTTTGTAATGGTGGAGGACCAATTGGAGAAGCAGTTGATTTTGCGATTGAGATGATGGAGAAAGGGCACTTACCAGAATTTTCATCATTTTCTATGCTGGCTGAAGGACTATACGCTTTATCCATGGAGGATACCCTGATTAAGCTTGTAGATATCATCATGGAGAAAGCAAGAGTTTCAGACAGTGAAGCTTCAATGATAAGGGGTTTCCTCAAAATCCGAAAATTTAAAGATGCACTGGCCACTCTAGGTGGTATTTTGAATAGCCAAAGGCCTAGAAAATCTTATCGGACCAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

665

Amino Acids

74.7

Weight (kDa)

6.14

Isoelectric Point (pI)

36.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	73 - 213	3.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	110 - 146	1.7e-06	PPR repeat family
PPR_2	PF13041	138 - 183	3.8e-11	PPR repeat family
TPR_24	PF23276	138 - 226	4.9e-06	Fungal tetratrico peptide repeats
PPR_1	PF12854	166 - 197	2.7e-10	PPR repeat
PPR_2	PF13041	171 - 218	9.3e-17	PPR repeat family
PPR	PF01535	172 - 202	2e-07	PPR repeat
PPR_1	PF12854	201 - 232	4.1e-11	PPR repeat
PPR_2	PF13041	209 - 253	1.7e-12	PPR repeat family
PPR_long	PF17177	217 - 353	1.7e-07	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	218 - 336	6.4e-11	Fungal tetratrico peptide repeats
PPR_3	PF13812	232 - 286	5.9e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	236 - 268	8.1e-11	PPR repeat
PPR_2	PF13041	240 - 288	2.3e-17	PPR repeat family
PPR	PF01535	242 - 272	1.2e-08	PPR repeat
PPR_long	PF17177	254 - 376	3.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	270 - 298	8.9e-12	PPR repeat
PPR_2	PF13041	274 - 322	9.9e-15	PPR repeat family
PPR_3	PF13812	302 - 356	5.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	305 - 338	5.6e-09	PPR repeat
PPR_2	PF13041	309 - 357	2.4e-16	PPR repeat family
PPR	PF01535	313 - 342	1.9e-06	PPR repeat
PPR_1	PF12854	340 - 373	2.2e-11	PPR repeat
PPR	PF01535	347 - 377	3.4e-08	PPR repeat
PPR_long	PF17177	357 - 502	3.7e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	367 - 424	1.1e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	377 - 408	1.7e-12	PPR repeat
PPR_2	PF13041	380 - 428	9.4e-19	PPR repeat family
PPR	PF01535	382 - 412	4.7e-09	PPR repeat
PPR_1	PF12854	411 - 442	2e-12	PPR repeat
PPR_2	PF13041	414 - 462	2.2e-16	PPR repeat family
PPR	PF01535	417 - 447	9.6e-08	PPR repeat
PPR_3	PF13812	438 - 494	1.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	446 - 477	5.1e-08	PPR repeat
PPR_2	PF13041	449 - 498	6.1e-17	PPR repeat family
PPR_1	PF12854	480 - 510	6.3e-12	PPR repeat
PPR_2	PF13041	484 - 525	8e-08	PPR repeat family
PPR_2	PF13041	522 - 568	1.9e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53700
fragaria_vesca	FvH4_6g14250
malus_domestica	MD04G1122700.v1.1 MD12G1138900.v1.1
prunus_persica	Prupe.6G250800_v2.0.a1
pyrus_communis	pycom12g13320
rosa_chinensis	RchiOBHm_Chr3g0467211
rosa_laevigata	RLG00000024519
rosa_multiflora	Rmu_sc0000962.1_g000073
rosa_roxburghii	Rroxscaffold_6G00413820
rosa_rugosa	Rorug03G0085700
rosa_samantha	Rh3AG134200 Rh3BG155500 Rh3CG155100 Rh3DG156300
rosa_wichuraiana	Rw3G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1572
Acc36I	ACCTGC	1 cut(s)	1487
AccI	GTMKAC	2 cut(s)	620, 1519
AccII	CGCG	4 cut(s)	239, 281, 898, 1135
AciI	CCGC	5 cut(s)	214, 217, 237, 244, 1133
AclWI	GGATC	2 cut(s)	1326, 1649
AcoI	YGGCCR	1 cut(s)	1935
AcsI	RAATTY	4 cut(s)	1206, 1243, 1772, 1919
AcuI	CTGAAG	1 cut(s)	1818
AdeI	CACNNNGTG	1 cut(s)	858
AfaI	GTAC	2 cut(s)	903, 937
AfiI	CCNNNNNNNGG	3 cut(s)	178, 877, 1480
AhdI	GACNNNNNGTC	1 cut(s)	232
AjiI	CACGTC	1 cut(s)	691
AjnI	CCWGG	1 cut(s)	32
Alw21I	GWGCWC	2 cut(s)	312, 343
Alw26I	GTCTC	2 cut(s)	42, 965
AlwI	GGATC	2 cut(s)	1326, 1649
AoxI	GGCC	5 cut(s)	258, 353, 1273, 1935, 1967
ApeKI	GCWGC	4 cut(s)	196, 268, 1125, 1409
ApoI	RAATTY	4 cut(s)	1206, 1243, 1772, 1919
AspLEI	GCGC	3 cut(s)	241, 283, 898
AspS9I	GGNCC	4 cut(s)	258, 1470, 1712, 1986
AsuC2I	CCSGG	1 cut(s)	872
AsuHPI	GGTGA	6 cut(s)	178, 461, 649, 776, 823, 1348
AvaII	GGWCC	3 cut(s)	1470, 1712, 1986
AxyI	CCTNAGG	1 cut(s)	177
BaeGI	GKGCMC	1 cut(s)	1764
BalI	TGGCCA	1 cut(s)	1937
BanII	GRGCYC	1 cut(s)	343
BbsI	GAAGAC	1 cut(s)	416
Bbv12I	GWGCWC	2 cut(s)	312, 343
BbvI	GCAGC	4 cut(s)	208, 280, 1137, 1421
BciT130I	CCWGG	1 cut(s)	34
BciVI	GTATCC	1 cut(s)	1819
BclI	TGATCA	3 cut(s)	613, 793, 1213
BcnI	CCSGG	1 cut(s)	872
BcoDI	GTCTC	2 cut(s)	42, 965
BfaI	CTAG	4 cut(s)	909, 1074, 1943, 1971
BfmI	CTRYAG	2 cut(s)	1226, 1384
BfuAI	ACCTGC	1 cut(s)	1487
BfuI	GTATCC	1 cut(s)	1819
BisI	GCNGC	5 cut(s)	197, 217, 269, 1126, 1410
BlsI	GCNGC	5 cut(s)	198, 218, 270, 1127, 1411
Bme1390I	CCNGG	2 cut(s)	34, 872
Bme18I	GGWCC	3 cut(s)	1470, 1712, 1986
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	691
BmgT120I	GGNCC	4 cut(s)	258, 1470, 1712, 1986
BmiI	GGNNCC	3 cut(s)	1471, 1472, 1554
BmrFI	CCNGG	2 cut(s)	34, 872
BmrI	ACTGGG	2 cut(s)	265, 267
BmsI	GCATC	5 cut(s)	14, 1186, 1291, 1654, 1918
BmuI	ACTGGG	2 cut(s)	265, 267
BpiI	GAAGAC	1 cut(s)	416
BpmI	CTGGAG	1 cut(s)	1644
BpuMI	CCSGG	1 cut(s)	872
BsaAI	YACGTR	2 cut(s)	729, 1377
BsaI	GGTCTC	2 cut(s)	42, 965
BsaJI	CCNNGG	1 cut(s)	1818
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 275, 1713, 1743
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 877, 1480
Bse1I	ACTGG	3 cut(s)	260, 273, 1938
Bse21I	CCTNAGG	1 cut(s)	177
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	1818
BseGI	GGATG	2 cut(s)	166, 1306
BseLI	CCNNNNNNNGG	3 cut(s)	178, 877, 1480
BseMII	CTCAG	2 cut(s)	191, 1497
BseNI	ACTGG	3 cut(s)	260, 273, 1938
BseRI	GAGGAG	6 cut(s)	191, 317, 389, 458, 893, 1019
BseSI	GKGCMC	1 cut(s)	1764
BseXI	GCAGC	4 cut(s)	208, 280, 1137, 1421
BseYI	CCCAGC	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	670
Bsh1236I	CGCG	4 cut(s)	239, 281, 898, 1135
BshFI	GGCC	5 cut(s)	260, 355, 1275, 1937, 1969
BsiHKAI	GWGCWC	2 cut(s)	312, 343
BsiSI	CCGG	1 cut(s)	871
BslFI	GGGAC	2 cut(s)	824, 1483
BslI	CCNNNNNNNGG	3 cut(s)	178, 877, 1480
BsmAI	GTCTC	2 cut(s)	42, 965
BsmFI	GGGAC	2 cut(s)	824, 1483
BsnI	GGCC	5 cut(s)	260, 355, 1275, 1937, 1969
Bso31I	GGTCTC	2 cut(s)	42, 965
Bsp1286I	GDGCHC	3 cut(s)	312, 343, 1764
Bsp143I	GATC	6 cut(s)	613, 712, 793, 1213, 1318, 1654
Bsp19I	CCATGG	1 cut(s)	1818
BspACI	CCGC	5 cut(s)	214, 217, 237, 244, 1133
BspANI	GGCC	5 cut(s)	260, 355, 1275, 1937, 1969
BspCNI	CTCAG	2 cut(s)	190, 1498
BspFNI	CGCG	4 cut(s)	239, 281, 898, 1135
BspLI	GGNNCC	3 cut(s)	1471, 1472, 1554
BspMAI	CTGCAG	1 cut(s)	1230
BspMI	ACCTGC	1 cut(s)	1487
BspPI	GGATC	2 cut(s)	1326, 1649
BspTNI	GGTCTC	2 cut(s)	42, 965
BsrI	ACTGG	3 cut(s)	260, 273, 1938
BssECI	CCNNGG	1 cut(s)	1818
BssMI	GATC	6 cut(s)	613, 712, 793, 1213, 1318, 1654
BssNAI	GTATAC	1 cut(s)	621
BssT1I	CCWWGG	1 cut(s)	1818
Bst1107I	GTATAC	1 cut(s)	621
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	9 cut(s)	520, 815, 829, 940, 974, 999, 1049, 1070, 1880
Bst6I	CTCTTC	3 cut(s)	254, 768, 1083
BstAPI	GCANNNNNTGC	2 cut(s)	24, 858
BstBAI	YACGTR	2 cut(s)	729, 1377
BstC8I	GCNNGC	6 cut(s)	312, 357, 672, 894, 1103, 1794
BstDEI	CTNAG	4 cut(s)	177, 888, 1506, 1526
BstDSI	CCRYGG	1 cut(s)	1818
BstENI	CCTNNNNNAGG	2 cut(s)	176, 1478
BstF5I	GGATG	2 cut(s)	166, 1306
BstFNI	CGCG	4 cut(s)	239, 281, 898, 1135
BstHHI	GCGC	3 cut(s)	241, 283, 898
BstKTI	GATC	6 cut(s)	616, 715, 796, 1216, 1321, 1657
BstMAI	GTCTC	2 cut(s)	42, 965
BstMBI	GATC	6 cut(s)	613, 712, 793, 1213, 1318, 1654
BstMWI	GCNNNNNNNGC	5 cut(s)	24, 111, 316, 667, 858
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	3 cut(s)	665, 674, 1568
BstSCI	CCNGG	2 cut(s)	32, 870
BstSFI	CTRYAG	2 cut(s)	1226, 1384
BstSLI	GKGCMC	1 cut(s)	1764
BstSNI	TACGTA	1 cut(s)	729
BstUI	CGCG	4 cut(s)	239, 281, 898, 1135
BstV1I	GCAGC	4 cut(s)	208, 280, 1137, 1421
BstV2I	GAAGAC	1 cut(s)	416
BstZ17I	GTATAC	1 cut(s)	621
Bsu36I	CCTNAGG	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	1819
BsuRI	GGCC	5 cut(s)	260, 355, 1275, 1937, 1969
BtgI	CCRYGG	1 cut(s)	1818
BtgZI	GCGATG	1 cut(s)	1634
BtrI	CACGTC	1 cut(s)	691
BtsCI	GGATG	2 cut(s)	166, 1306
BtsI	GCAGTG	1 cut(s)	786
BtsIMutI	CAGTG	5 cut(s)	786, 947, 1254, 1885, 1931
BveI	ACCTGC	1 cut(s)	1487
Cac8I	GCNNGC	6 cut(s)	312, 357, 672, 894, 1103, 1794
CfoI	GCGC	3 cut(s)	241, 283, 898
Cfr13I	GGNCC	4 cut(s)	258, 1470, 1712, 1986
Csp6I	GTAC	2 cut(s)	902, 936
CviAII	CATG	8 cut(s)	107, 662, 671, 1315, 1429, 1565, 1819, 1855
CviQI	GTAC	2 cut(s)	902, 936
DdeI	CTNAG	4 cut(s)	177, 888, 1506, 1526
DpnI	GATC	6 cut(s)	615, 714, 795, 1215, 1320, 1656
DpnII	GATC	6 cut(s)	613, 712, 793, 1213, 1318, 1654
DraI	TTTAAA	2 cut(s)	1597, 1924
DraIII	CACNNNGTG	1 cut(s)	858
DriI	GACNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	1935
Eam1104I	CTCTTC	3 cut(s)	254, 768, 1083
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	3 cut(s)	254, 768, 1083
EciI	GGCGGA	2 cut(s)	203, 233
Ecl136II	GAGCTC	1 cut(s)	341
Eco105I	TACGTA	1 cut(s)	729
Eco130I	CCWWGG	1 cut(s)	1818
Eco147I	AGGCCT	2 cut(s)	355, 1969
Eco24I	GRGCYC	1 cut(s)	343
Eco31I	GGTCTC	2 cut(s)	42, 965
Eco32I	GATATC	2 cut(s)	721, 1849
Eco47I	GGWCC	3 cut(s)	1470, 1712, 1986
Eco53kI	GAGCTC	1 cut(s)	341
Eco57I	CTGAAG	1 cut(s)	1818
Eco81I	CCTNAGG	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	341
EcoNI	CCTNNNNNAGG	2 cut(s)	176, 1478
EcoO109I	RGGNCCY	1 cut(s)	1470
EcoRII	CCWGG	1 cut(s)	32
EcoRV	GATATC	2 cut(s)	721, 1849
EcoT14I	CCWWGG	1 cut(s)	1818
EcoT38I	GRGCYC	1 cut(s)	343
ErhI	CCWWGG	1 cut(s)	1818
FaeI	CATG	8 cut(s)	110, 665, 674, 1318, 1432, 1568, 1822, 1858
FalI	AAGNNNNNCTT	2 cut(s)	1670, 1702
FaqI	GGGAC	2 cut(s)	824, 1483
FatI	CATG	8 cut(s)	106, 661, 670, 1314, 1428, 1564, 1818, 1854
FbaI	TGATCA	3 cut(s)	613, 793, 1213
FblI	GTMKAC	2 cut(s)	620, 1519
Fnu4HI	GCNGC	5 cut(s)	197, 217, 269, 1126, 1410
FokI	GGATG	2 cut(s)	153, 1313
FriOI	GRGCYC	1 cut(s)	343
Fsp4HI	GCNGC	5 cut(s)	197, 217, 269, 1126, 1410
FspBI	CTAG	4 cut(s)	909, 1074, 1943, 1971
GlaI	GCGC	3 cut(s)	240, 282, 897
GluI	GCNGC	5 cut(s)	197, 217, 269, 1126, 1410
GsaI	CCCAGC	1 cut(s)	196
GsuI	CTGGAG	1 cut(s)	1644
HaeIII	GGCC	5 cut(s)	260, 355, 1275, 1937, 1969
HapII	CCGG	1 cut(s)	871
HhaI	GCGC	3 cut(s)	241, 283, 898
Hin1II	CATG	8 cut(s)	110, 665, 674, 1318, 1432, 1568, 1822, 1858
Hin6I	GCGC	3 cut(s)	239, 281, 896
HinP1I	GCGC	3 cut(s)	239, 281, 896
HindIII	AAGCTT	3 cut(s)	890, 1838, 1884
HinfI	GANTC	7 cut(s)	206, 230, 918, 952, 1118, 1521, 1558
HpaII	CCGG	1 cut(s)	871
HphI	GGTGA	6 cut(s)	178, 461, 649, 776, 823, 1348
Hpy166II	GTNNAC	7 cut(s)	621, 784, 902, 1041, 1356, 1448, 1520
Hpy188III	TCNNGA	8 cut(s)	179, 611, 716, 791, 1074, 1239, 1634, 1661
Hpy8I	GTNNAC	7 cut(s)	621, 784, 902, 1041, 1356, 1448, 1520
Hpy99I	CGWCG	2 cut(s)	122, 230
HpyAV	CCTTC	6 cut(s)	91, 106, 634, 1328, 1399, 1793
HpyCH4III	ACNGT	9 cut(s)	520, 815, 829, 940, 974, 999, 1049, 1070, 1880
HpyCH4IV	ACGT	5 cut(s)	623, 632, 690, 728, 1376
HpyF10VI	GCNNNNNNNGC	5 cut(s)	24, 111, 316, 667, 858
HpyF3I	CTNAG	4 cut(s)	177, 888, 1506, 1526
HpySE526I	ACGT	5 cut(s)	623, 632, 690, 728, 1376
Hsp92II	CATG	8 cut(s)	110, 665, 674, 1318, 1432, 1568, 1822, 1858
HspAI	GCGC	3 cut(s)	239, 281, 896
KflI	GGGWCCC	1 cut(s)	1470
Ksp22I	TGATCA	3 cut(s)	613, 793, 1213
Kzo9I	GATC	6 cut(s)	613, 712, 793, 1213, 1318, 1654
LmnI	GCTCC	3 cut(s)	204, 246, 478
Lsp1109I	GCAGC	4 cut(s)	208, 280, 1137, 1421
LweI	GCATC	5 cut(s)	14, 1186, 1291, 1654, 1918
MaeI	CTAG	4 cut(s)	909, 1074, 1943, 1971
MaeII	ACGT	5 cut(s)	623, 632, 690, 728, 1376
MaeIII	GTNAC	4 cut(s)	514, 829, 1249, 1459
MalI	GATC	6 cut(s)	615, 714, 795, 1215, 1320, 1656
MboI	GATC	6 cut(s)	613, 712, 793, 1213, 1318, 1654
MboII	GAAGA	8 cut(s)	120, 241, 421, 598, 785, 1024, 1100, 1205
MfeI	CAATTG	1 cut(s)	1716
MhlI	GDGCHC	3 cut(s)	312, 343, 1764
MlsI	TGGCCA	1 cut(s)	1937
MluNI	TGGCCA	1 cut(s)	1937
MlyI	GAGTC	5 cut(s)	200, 239, 1127, 1515, 1552
MmeI	TCCRAC	1 cut(s)	1580
Mox20I	TGGCCA	1 cut(s)	1937
MscI	TGGCCA	1 cut(s)	1937
MslI	CAYNNNNRTG	1 cut(s)	425
Msp20I	TGGCCA	1 cut(s)	1937
MspA1I	CMGCKG	1 cut(s)	1128
MspI	CCGG	1 cut(s)	871
MspR9I	CCNGG	2 cut(s)	34, 872
MunI	CAATTG	1 cut(s)	1716
MvaI	CCWGG	1 cut(s)	34
MvnI	CGCG	4 cut(s)	239, 281, 898, 1135
MwoI	GCNNNNNNNGC	5 cut(s)	24, 111, 316, 667, 858
NciI	CCSGG	1 cut(s)	872
NcoI	CCATGG	1 cut(s)	1818
NdeII	GATC	6 cut(s)	613, 712, 793, 1213, 1318, 1654
NlaIII	CATG	8 cut(s)	110, 665, 674, 1318, 1432, 1568, 1822, 1858
NlaIV	GGNNCC	3 cut(s)	1471, 1472, 1554
NmuCI	GTSAC	4 cut(s)	514, 829, 1249, 1459
NspI	RCATGY	3 cut(s)	665, 674, 1568
PaeI	GCATGC	1 cut(s)	674
PceI	AGGCCT	2 cut(s)	355, 1969
PcsI	WCGNNNNNNNCGW	2 cut(s)	629, 1373
PfeI	GAWTC	2 cut(s)	918, 952
PflFI	GACNNNGTC	1 cut(s)	1457
PkrI	GCNGC	5 cut(s)	198, 218, 270, 1127, 1411
PleI	GAGTC	5 cut(s)	200, 238, 1126, 1515, 1552
PpsI	GAGTC	5 cut(s)	200, 238, 1126, 1515, 1552
Ppu21I	YACGTR	2 cut(s)	729, 1377
PpuMI	RGGWCCY	1 cut(s)	1470
PsiI	TTATAA	1 cut(s)	1572
Psp124BI	GAGCTC	1 cut(s)	343
Psp5II	RGGWCCY	1 cut(s)	1470
Psp6I	CCWGG	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	3 cut(s)	1471, 1472, 1554
PspPI	GGNCC	4 cut(s)	258, 1470, 1712, 1986
PspPPI	RGGWCCY	1 cut(s)	1470
PstI	CTGCAG	1 cut(s)	1230
PsyI	GACNNNGTC	1 cut(s)	1457
PvuII	CAGCTG	1 cut(s)	1128
RsaI	GTAC	2 cut(s)	903, 937
RsaNI	GTAC	2 cut(s)	902, 936
RseI	CAYNNNNRTG	1 cut(s)	425
SacI	GAGCTC	1 cut(s)	343
SatI	GCNGC	5 cut(s)	197, 217, 269, 1126, 1410
Sau3AI	GATC	6 cut(s)	613, 712, 793, 1213, 1318, 1654
Sau96I	GGNCC	4 cut(s)	258, 1470, 1712, 1986
SchI	GAGTC	5 cut(s)	200, 239, 1127, 1515, 1552
ScrFI	CCNGG	2 cut(s)	34, 872
SduI	GDGCHC	3 cut(s)	312, 343, 1764
SfaNI	GCATC	5 cut(s)	14, 1186, 1291, 1654, 1918
SfcI	CTRYAG	2 cut(s)	1226, 1384
SinI	GGWCC	3 cut(s)	1470, 1712, 1986
SmiMI	CAYNNNNRTG	1 cut(s)	425
SnaBI	TACGTA	1 cut(s)	729
SphI	GCATGC	1 cut(s)	674
SseBI	AGGCCT	2 cut(s)	355, 1969
SsiI	CCGC	5 cut(s)	214, 217, 237, 244, 1133
SspMI	CTAG	4 cut(s)	909, 1074, 1943, 1971
SstI	GAGCTC	1 cut(s)	343
StuI	AGGCCT	2 cut(s)	355, 1969
StyD4I	CCNGG	2 cut(s)	32, 870
StyI	CCWWGG	1 cut(s)	1818
TaaI	ACNGT	9 cut(s)	520, 815, 829, 940, 974, 999, 1049, 1070, 1880
TaiI	ACGT	5 cut(s)	626, 635, 693, 731, 1379
TaqI	TCGA	6 cut(s)	76, 204, 252, 806, 1121, 1633
TatI	WGTACW	2 cut(s)	901, 935
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	2 cut(s)	918, 952
TscAI	CASTG	5 cut(s)	786, 954, 1254, 1885, 1938
TseFI	GTSAC	4 cut(s)	514, 829, 1249, 1459
TseI	GCWGC	4 cut(s)	196, 268, 1125, 1409
Tsp45I	GTSAC	4 cut(s)	514, 829, 1249, 1459
TspDTI	ATGAA	8 cut(s)	113, 123, 470, 579, 1025, 1031, 1556, 1767
TspRI	CASTG	5 cut(s)	786, 954, 1254, 1885, 1938
Tth111I	GACNNNGTC	1 cut(s)	1457
VpaK11BI	GGWCC	3 cut(s)	1470, 1712, 1986
XagI	CCTNNNNNAGG	2 cut(s)	176, 1478
XapI	RAATTY	4 cut(s)	1206, 1243, 1772, 1919
XbaI	TCTAGA	1 cut(s)	1073
XceI	RCATGY	3 cut(s)	665, 674, 1568
XmiI	GTMKAC	2 cut(s)	620, 1519
XspI	CTAG	4 cut(s)	909, 1074, 1943, 1971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.