Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0015205

Physical Location & Seq

Genomic Coordinates Reverse (-)

12499598 .. 12501897

Gene Structure 2300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G012700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2262 bp

ATGGCTTCCTCTTTCTGCACCCGATGCTATTCCTGGTCTCTCACACCCACCATAAACCCAACACCTCCACCTCATCGACCCTTCACTTCCCTCTCCTTCCCTCGCCATGAACGCCTCGTCGTTCATTCTTCACTTTCCTATTCTACCCCAATTTCTACTACCCATCATCCCCTCCCTCAGGACTTCACTCCCCAGCAGCTCCTCGACTCCCTCCGCCGCCAAAACGACGAGTCGTCCGCGCTCCGCCTCTTCGACTGGGCCTCCAAGCAGCCCAGTTTCGCGCCCAACCCCACCATCTACGAGGAGGTGCTCGCCAAGCTCGGAAAGGTCGGGTCTTTCGAGTCGATGAGGGACATCTTGGATGAAATGAAGCACAATGGGTGCCTCAGTAAAGGTAGTTTCTTGATTTTCATCGAGAGTTACGCTATGTTTGATTTGTATGATGAGATTCTGGGTGTTGTGGATGTGATGGAGAGTGAATTCGGGTTGAAACCCGATACCCATTTCTTTAATTTCTTGCTCAATGTGTTGGTTGATGGGAACAAGCTTAAACTAGTTGAAACTGCGAATTCGAGCATGAATAGCAAGGGGATTAAGCCTGATGTGTCTACATTTAACATTTTGATTAAGGCTTTGTGTAGAGCTCATCAGATTAGGCCTGCTCTTTTGTTGATGGAGGAGATGGGGAACTATGGTTTGAAGCCTGATGAGAAGACTTTTACCACCATAATGCAGGGTTATATTGAGGAGGGTGAGATGAAAGGTGCATTGAGAATTAGGGAGCAGATGGTAGAGTATGGTTGCCATTGTAGTAATGTGACTGTTAATGTTTTGGTTAATGGGTTTTGCAAGGAGGGTAGGGAGGGGTTTTCTCCTGATCAGTATACGTTTAATACGTTGGTGAAGGGTTTGTGCAGGGTGGGGCATGTTAAGCATGCTTTGGAGGTTATGGACGTGATGTTGCAAGAGGGGTTTGATCTGGATATCTATACGTATAACTCTTTGGTTTCGGGGTTGTGTAAGTTGGGTGAAATTGAAGAGGCAGTGGACATTCTTGATCAGATGGTTTCGAGGGACTGTTCCCCAAATACTGTCACGTATAATACTCTGATTAGCACATTGTGCAAGGAGAACCGGGTTGAGGAGGCTACTAAGCTTGCGCGTGTACTTACTAGCAAGGGAATCATACCTGATGTTTGTACTGTCAATTCGCTGATTCAAGGTCTCTGCTTGAACAGTAATCATAAAGTTGCTATGGAACTGTTTGAGGAGATGAAGATGAAAGGGTGTCAGCCTGATGGGTTTACTTACAGTTTGCTTATTGATAGCTACTGTTCTAGAGGGAAGCTGGAAGAGGCTTTGAGCTTGCTGAAAGATATGGAGTCGAGCAGCTGTCCGCGAAATGCAGTAATATACAATACTCTGATTGATGGGTTCTGCAAAAACAAGAGGATTGAAGATGCAGAGGAAATTTTTGATCAGATGGAACTGCAGGGTATTTCAAGAAATTCAGTGACCTATAACACCCTTATTGATGGCCTTTGCCAGAGTAGGAGGGTGGAGGACGCTTCTCAACTCATGGATCAGATGATAATGGAAGGCTTGAAGCCTGACAAGTTCACCTACAATTCGCTTCTCACGTATTTCTGTAGGTCGGGGGATATTAAGAAGGCAGCCGATATTGTTCAAAACATGACTTCAAATGGGTGTGAACCAGACATTGTCACTTATGGGACCCTAATTCAGGGGTTATGTAAGGCAGGTAGAACTGAGGTTGCGAGTAGACTCCTAAGAAGTTTGCAGATGAAAGGGTTGGTTCCGACTCCACATGCTTATAACCCTGTGATACAAGCACTATTTAAACGAAAGAGAACAACAGAAGCGATGAGGCTTGTTCGAGAAATGATGGAAAAAGCTGATCCTCCAGATGCTATAACATTTAAGATTGTCTTTCGTGGGCTTTGTAATGGTGGAGGACCAATTGGAGAAGCAGTTGATTTTGCGATTGAGATGATGGAGAAAGGGCACTTACCAGAATTTTCATCATTTTCTATGCTGGCTGAAGGACTATACGCTTTATCCATGGAGGATACCCTGATTAAGCTTGTAGATATCATCATGGAGAAAGCAAGAGTTTCAGACAGTGAAGCTTCAATGATAAGGGGTTTCCTCAAAATCCGAAAATTTAAAGATGCACTGGCCACTCTAGGTGGTATTTTGAATAGCCAAAGGCCTAGAAAATCTTATCGGACCAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

753

Amino Acids

84.56

Weight (kDa)

5.83

Isoelectric Point (pI)

35.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	163 - 287	1e-06	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	165 - 214	5e-09	PPR repeat family
PPR_1	PF12854	196 - 228	1e-08	PPR repeat
PPR_2	PF13041	202 - 247	2.6e-11	PPR repeat family
PPR_2	PF13041	239 - 284	4.1e-11	PPR repeat family
PPR_1	PF12854	289 - 320	4.7e-11	PPR repeat
PPR_2	PF13041	292 - 341	1e-14	PPR repeat family
PPR_long	PF17177	300 - 440	1.3e-07	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	306 - 424	7.8e-11	Fungal tetratrico peptide repeats
PPR_3	PF13812	317 - 374	2.8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	324 - 356	9.4e-11	PPR repeat
PPR_2	PF13041	328 - 376	2.8e-17	PPR repeat family
PPR	PF01535	330 - 360	1.4e-08	PPR repeat
PPR_1	PF12854	358 - 386	1e-11	PPR repeat
PPR_2	PF13041	362 - 410	1.2e-14	PPR repeat family
PPR_3	PF13812	390 - 444	6.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	393 - 426	6.5e-09	PPR repeat
PPR_2	PF13041	397 - 445	2.8e-16	PPR repeat family
PPR	PF01535	401 - 430	2.2e-06	PPR repeat
PPR_1	PF12854	428 - 461	2.5e-11	PPR repeat
PPR	PF01535	435 - 465	4e-08	PPR repeat
PPR_long	PF17177	445 - 590	5.6e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	455 - 512	1.3e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	465 - 496	2e-12	PPR repeat
PPR_2	PF13041	468 - 516	1.1e-18	PPR repeat family
PPR	PF01535	470 - 500	5.5e-09	PPR repeat
PPR_1	PF12854	499 - 530	2.3e-12	PPR repeat
PPR_2	PF13041	502 - 546	2.4e-15	PPR repeat family
PPR	PF01535	505 - 535	1.1e-07	PPR repeat
PPR_3	PF13812	526 - 582	1.8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	534 - 565	5.9e-08	PPR repeat
PPR_2	PF13041	540 - 586	6.1e-16	PPR repeat family
PPR_1	PF12854	568 - 598	7.3e-12	PPR repeat
PPR_2	PF13041	572 - 613	9.3e-08	PPR repeat family
PPR_2	PF13041	610 - 656	2.2e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53700
fragaria_vesca	FvH4_6g14250
malus_domestica	MD04G1122700.v1.1 MD12G1138900.v1.1
prunus_persica	Prupe.6G250800_v2.0.a1
pyrus_communis	pycom12g13320
rosa_chinensis	RchiOBHm_Chr3g0467211
rosa_laevigata	RLG00000024519
rosa_multiflora	Rmu_sc0000962.1_g000073
rosa_roxburghii	Rroxscaffold_6G00413820
rosa_rugosa	Rorug03G0085700
rosa_samantha	Rh3AG134200 Rh3BG155500 Rh3CG155100 Rh3DG156300
rosa_wichuraiana	Rw3G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1836
Acc36I	ACCTGC	1 cut(s)	1751
AccB1I	GGYRCC	1 cut(s)	381
AccI	GTMKAC	3 cut(s)	608, 884, 1783
AccII	CGCG	4 cut(s)	239, 281, 1162, 1399
AciI	CCGC	5 cut(s)	214, 217, 237, 244, 1397
AclWI	GGATC	2 cut(s)	1590, 1913
AcoI	YGGCCR	1 cut(s)	2199
AcsI	RAATTY	6 cut(s)	479, 568, 1470, 1507, 2036, 2183
AcuI	CTGAAG	1 cut(s)	2082
AdeI	CACNNNGTG	1 cut(s)	1122
AfaI	GTAC	2 cut(s)	1167, 1201
AfiI	CCNNNNNNNGG	3 cut(s)	178, 1141, 1744
AhdI	GACNNNNNGTC	1 cut(s)	232
AhlI	ACTAGT	1 cut(s)	553
AjiI	CACGTC	1 cut(s)	955
AjnI	CCWGG	1 cut(s)	32
Alw21I	GWGCWC	2 cut(s)	312, 646
Alw26I	GTCTC	2 cut(s)	42, 1229
AlwI	GGATC	2 cut(s)	1590, 1913
AoxI	GGCC	5 cut(s)	258, 656, 1537, 2199, 2231
ApeKI	GCWGC	4 cut(s)	196, 268, 1389, 1673
ApoI	RAATTY	6 cut(s)	479, 568, 1470, 1507, 2036, 2183
AspLEI	GCGC	3 cut(s)	241, 283, 1162
AspS9I	GGNCC	4 cut(s)	258, 1734, 1976, 2250
AsuC2I	CCSGG	1 cut(s)	1136
AsuHPI	GGTGA	4 cut(s)	764, 913, 1040, 1612
AvaII	GGWCC	3 cut(s)	1734, 1976, 2250
AxyI	CCTNAGG	1 cut(s)	177
BaeGI	GKGCMC	1 cut(s)	2028
BalI	TGGCCA	1 cut(s)	2201
BanI	GGYRCC	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	646
BbsI	GAAGAC	1 cut(s)	719
Bbv12I	GWGCWC	2 cut(s)	312, 646
BbvI	GCAGC	4 cut(s)	208, 280, 1401, 1685
BciT130I	CCWGG	1 cut(s)	34
BciVI	GTATCC	1 cut(s)	2083
BclI	TGATCA	3 cut(s)	877, 1057, 1477
BcnI	CCSGG	1 cut(s)	1136
BcoDI	GTCTC	2 cut(s)	42, 1229
BcuI	ACTAGT	1 cut(s)	553
BfaI	CTAG	5 cut(s)	554, 1173, 1338, 2207, 2235
BfmI	CTRYAG	2 cut(s)	1490, 1648
BfuAI	ACCTGC	1 cut(s)	1751
BfuI	GTATCC	1 cut(s)	2083
BisI	GCNGC	5 cut(s)	197, 217, 269, 1390, 1674
BlsI	GCNGC	5 cut(s)	198, 218, 270, 1391, 1675
Bme1390I	CCNGG	2 cut(s)	34, 1136
Bme18I	GGWCC	3 cut(s)	1734, 1976, 2250
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgBI	CACGTC	1 cut(s)	955
BmgT120I	GGNCC	4 cut(s)	258, 1734, 1976, 2250
BmiI	GGNNCC	4 cut(s)	383, 1735, 1736, 1818
BmrFI	CCNGG	2 cut(s)	34, 1136
BmrI	ACTGGG	2 cut(s)	265, 267
BmsI	GCATC	4 cut(s)	14, 1450, 1918, 2182
BmuI	ACTGGG	2 cut(s)	265, 267
BpiI	GAAGAC	1 cut(s)	719
BpmI	CTGGAG	1 cut(s)	1908
BpuMI	CCSGG	1 cut(s)	1136
BsaAI	YACGTR	3 cut(s)	993, 1098, 1641
BsaBI	GATNNNNATC	1 cut(s)	410
BsaI	GGTCTC	2 cut(s)	42, 1229
BsaJI	CCNNGG	1 cut(s)	2082
BsaXI	ACNNNNNCTCC	4 cut(s)	245, 275, 1977, 2007
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 1141, 1744
Bse1I	ACTGG	3 cut(s)	260, 273, 2202
Bse21I	CCTNAGG	1 cut(s)	177
Bse8I	GATNNNNATC	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	1 cut(s)	2082
BseGI	GGATG	3 cut(s)	166, 367, 469
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	3 cut(s)	178, 1141, 1744
BseMII	CTCAG	3 cut(s)	191, 400, 1761
BseNI	ACTGG	3 cut(s)	260, 273, 2202
BseRI	GAGGAG	6 cut(s)	191, 317, 692, 761, 1157, 1283
BseSI	GKGCMC	1 cut(s)	2028
BseXI	GCAGC	4 cut(s)	208, 280, 1401, 1685
BseYI	CCCAGC	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	934
Bsh1236I	CGCG	4 cut(s)	239, 281, 1162, 1399
BshFI	GGCC	5 cut(s)	260, 658, 1539, 2201, 2233
BshNI	GGYRCC	1 cut(s)	381
BsiHKAI	GWGCWC	2 cut(s)	312, 646
BsiSI	CCGG	1 cut(s)	1135
BslFI	GGGAC	3 cut(s)	365, 1088, 1747
BslI	CCNNNNNNNGG	3 cut(s)	178, 1141, 1744
BsmAI	GTCTC	2 cut(s)	42, 1229
BsmFI	GGGAC	3 cut(s)	365, 1088, 1747
BsnI	GGCC	5 cut(s)	260, 658, 1539, 2201, 2233
Bso31I	GGTCTC	2 cut(s)	42, 1229
Bsp1286I	GDGCHC	3 cut(s)	312, 646, 2028
Bsp143I	GATC	6 cut(s)	877, 976, 1057, 1477, 1582, 1918
Bsp19I	CCATGG	1 cut(s)	2082
BspACI	CCGC	5 cut(s)	214, 217, 237, 244, 1397
BspANI	GGCC	5 cut(s)	260, 658, 1539, 2201, 2233
BspCNI	CTCAG	3 cut(s)	190, 399, 1762
BspFNI	CGCG	4 cut(s)	239, 281, 1162, 1399
BspLI	GGNNCC	4 cut(s)	383, 1735, 1736, 1818
BspMAI	CTGCAG	1 cut(s)	1494
BspMI	ACCTGC	1 cut(s)	1751
BspPI	GGATC	2 cut(s)	1590, 1913
BspT107I	GGYRCC	1 cut(s)	381
BspTNI	GGTCTC	2 cut(s)	42, 1229
BsrI	ACTGG	3 cut(s)	260, 273, 2202
BssECI	CCNNGG	1 cut(s)	2082
BssMI	GATC	6 cut(s)	877, 976, 1057, 1477, 1582, 1918
BssNAI	GTATAC	1 cut(s)	885
BssT1I	CCWWGG	1 cut(s)	2082
Bst1107I	GTATAC	1 cut(s)	885
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	9 cut(s)	823, 1079, 1093, 1204, 1238, 1263, 1313, 1334, 2144
Bst6I	CTCTTC	3 cut(s)	254, 1032, 1347
BstAPI	GCANNNNNTGC	2 cut(s)	24, 1122
BstBAI	YACGTR	3 cut(s)	993, 1098, 1641
BstC8I	GCNNGC	6 cut(s)	312, 660, 936, 1158, 1367, 2058
BstDEI	CTNAG	5 cut(s)	177, 386, 1152, 1770, 1790
BstDSI	CCRYGG	1 cut(s)	2082
BstENI	CCTNNNNNAGG	2 cut(s)	176, 1742
BstF5I	GGATG	3 cut(s)	166, 367, 469
BstFNI	CGCG	4 cut(s)	239, 281, 1162, 1399
BstHHI	GCGC	3 cut(s)	241, 283, 1162
BstKTI	GATC	6 cut(s)	880, 979, 1060, 1480, 1585, 1921
BstMAI	GTCTC	2 cut(s)	42, 1229
BstMBI	GATC	6 cut(s)	877, 976, 1057, 1477, 1582, 1918
BstMWI	GCNNNNNNNGC	6 cut(s)	24, 111, 316, 582, 931, 1122
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	3 cut(s)	929, 938, 1832
BstSCI	CCNGG	2 cut(s)	32, 1134
BstSFI	CTRYAG	2 cut(s)	1490, 1648
BstSLI	GKGCMC	1 cut(s)	2028
BstSNI	TACGTA	1 cut(s)	993
BstUI	CGCG	4 cut(s)	239, 281, 1162, 1399
BstV1I	GCAGC	4 cut(s)	208, 280, 1401, 1685
BstV2I	GAAGAC	1 cut(s)	719
BstZ17I	GTATAC	1 cut(s)	885
Bsu36I	CCTNAGG	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	2083
BsuRI	GGCC	5 cut(s)	260, 658, 1539, 2201, 2233
BtgI	CCRYGG	1 cut(s)	2082
BtgZI	GCGATG	1 cut(s)	1898
BtrI	CACGTC	1 cut(s)	955
BtsCI	GGATG	3 cut(s)	166, 367, 469
BtsI	GCAGTG	1 cut(s)	1050
BtsIMutI	CAGTG	4 cut(s)	1050, 1518, 2149, 2195
BveI	ACCTGC	1 cut(s)	1751
Cac8I	GCNNGC	6 cut(s)	312, 660, 936, 1158, 1367, 2058
CfoI	GCGC	3 cut(s)	241, 283, 1162
Cfr13I	GGNCC	4 cut(s)	258, 1734, 1976, 2250
CseI	GACGC	1 cut(s)	1574
Csp6I	GTAC	2 cut(s)	1166, 1200
CviAII	CATG	9 cut(s)	107, 577, 926, 935, 1579, 1693, 1829, 2083, 2119
CviQI	GTAC	2 cut(s)	1166, 1200
DdeI	CTNAG	5 cut(s)	177, 386, 1152, 1770, 1790
DpnI	GATC	6 cut(s)	879, 978, 1059, 1479, 1584, 1920
DpnII	GATC	6 cut(s)	877, 976, 1057, 1477, 1582, 1918
DraI	TTTAAA	2 cut(s)	1861, 2188
DraIII	CACNNNGTG	1 cut(s)	1122
DriI	GACNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	1 cut(s)	2199
Eam1104I	CTCTTC	3 cut(s)	254, 1032, 1347
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	3 cut(s)	254, 1032, 1347
EciI	GGCGGA	2 cut(s)	203, 233
Ecl136II	GAGCTC	1 cut(s)	644
Eco105I	TACGTA	1 cut(s)	993
Eco130I	CCWWGG	1 cut(s)	2082
Eco147I	AGGCCT	2 cut(s)	658, 2233
Eco24I	GRGCYC	1 cut(s)	646
Eco31I	GGTCTC	2 cut(s)	42, 1229
Eco32I	GATATC	2 cut(s)	985, 2113
Eco47I	GGWCC	3 cut(s)	1734, 1976, 2250
Eco53kI	GAGCTC	1 cut(s)	644
Eco57I	CTGAAG	1 cut(s)	2082
Eco81I	CCTNAGG	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	644
EcoNI	CCTNNNNNAGG	2 cut(s)	176, 1742
EcoO109I	RGGNCCY	1 cut(s)	1734
EcoRI	GAATTC	2 cut(s)	479, 568
EcoRII	CCWGG	1 cut(s)	32
EcoRV	GATATC	2 cut(s)	985, 2113
EcoT14I	CCWWGG	1 cut(s)	2082
EcoT38I	GRGCYC	1 cut(s)	646
ErhI	CCWWGG	1 cut(s)	2082
FaeI	CATG	9 cut(s)	110, 580, 929, 938, 1582, 1696, 1832, 2086, 2122
FalI	AAGNNNNNCTT	2 cut(s)	1934, 1966
FaqI	GGGAC	3 cut(s)	365, 1088, 1747
FatI	CATG	9 cut(s)	106, 576, 925, 934, 1578, 1692, 1828, 2082, 2118
FbaI	TGATCA	3 cut(s)	877, 1057, 1477
FblI	GTMKAC	3 cut(s)	608, 884, 1783
Fnu4HI	GCNGC	5 cut(s)	197, 217, 269, 1390, 1674
FokI	GGATG	3 cut(s)	153, 374, 476
FriOI	GRGCYC	1 cut(s)	646
Fsp4HI	GCNGC	5 cut(s)	197, 217, 269, 1390, 1674
FspBI	CTAG	5 cut(s)	554, 1173, 1338, 2207, 2235
GlaI	GCGC	3 cut(s)	240, 282, 1161
GluI	GCNGC	5 cut(s)	197, 217, 269, 1390, 1674
GsaI	CCCAGC	1 cut(s)	196
GsuI	CTGGAG	1 cut(s)	1908
HaeIII	GGCC	5 cut(s)	260, 658, 1539, 2201, 2233
HapII	CCGG	1 cut(s)	1135
HgaI	GACGC	1 cut(s)	1574
HhaI	GCGC	3 cut(s)	241, 283, 1162
Hin1II	CATG	9 cut(s)	110, 580, 929, 938, 1582, 1696, 1832, 2086, 2122
Hin6I	GCGC	3 cut(s)	239, 281, 1160
HinP1I	GCGC	3 cut(s)	239, 281, 1160
HindIII	AAGCTT	4 cut(s)	545, 1154, 2102, 2148
HinfI	GANTC	9 cut(s)	206, 230, 341, 448, 1182, 1216, 1382, 1785, 1822
HpaII	CCGG	1 cut(s)	1135
HphI	GGTGA	4 cut(s)	764, 913, 1040, 1612
Hpy166II	GTNNAC	8 cut(s)	609, 885, 1048, 1166, 1305, 1620, 1712, 1784
Hpy8I	GTNNAC	8 cut(s)	609, 885, 1048, 1166, 1305, 1620, 1712, 1784
Hpy99I	CGWCG	2 cut(s)	122, 230
HpyAV	CCTTC	6 cut(s)	91, 106, 898, 1592, 1663, 2057
HpyCH4III	ACNGT	9 cut(s)	823, 1079, 1093, 1204, 1238, 1263, 1313, 1334, 2144
HpyCH4IV	ACGT	6 cut(s)	887, 896, 954, 992, 1097, 1640
HpyF10VI	GCNNNNNNNGC	6 cut(s)	24, 111, 316, 582, 931, 1122
HpyF3I	CTNAG	5 cut(s)	177, 386, 1152, 1770, 1790
HpySE526I	ACGT	6 cut(s)	887, 896, 954, 992, 1097, 1640
Hsp92II	CATG	9 cut(s)	110, 580, 929, 938, 1582, 1696, 1832, 2086, 2122
HspAI	GCGC	3 cut(s)	239, 281, 1160
KflI	GGGWCCC	1 cut(s)	1734
Ksp22I	TGATCA	3 cut(s)	877, 1057, 1477
Kzo9I	GATC	6 cut(s)	877, 976, 1057, 1477, 1582, 1918
LmnI	GCTCC	3 cut(s)	204, 246, 781
Lsp1109I	GCAGC	4 cut(s)	208, 280, 1401, 1685
LweI	GCATC	4 cut(s)	14, 1450, 1918, 2182
MaeI	CTAG	5 cut(s)	554, 1173, 1338, 2207, 2235
MaeII	ACGT	6 cut(s)	887, 896, 954, 992, 1097, 1640
MaeIII	GTNAC	5 cut(s)	419, 817, 1093, 1513, 1723
MalI	GATC	6 cut(s)	879, 978, 1059, 1479, 1584, 1920
MboI	GATC	6 cut(s)	877, 976, 1057, 1477, 1582, 1918
MboII	GAAGA	7 cut(s)	120, 241, 724, 1049, 1288, 1364, 1469
MfeI	CAATTG	1 cut(s)	1980
MhlI	GDGCHC	3 cut(s)	312, 646, 2028
MlsI	TGGCCA	1 cut(s)	2201
MluNI	TGGCCA	1 cut(s)	2201
MlyI	GAGTC	6 cut(s)	200, 239, 350, 1391, 1779, 1816
MmeI	TCCRAC	1 cut(s)	1844
Mox20I	TGGCCA	1 cut(s)	2201
MscI	TGGCCA	1 cut(s)	2201
MslI	CAYNNNNRTG	1 cut(s)	728
Msp20I	TGGCCA	1 cut(s)	2201
MspA1I	CMGCKG	1 cut(s)	1392
MspI	CCGG	1 cut(s)	1135
MspR9I	CCNGG	2 cut(s)	34, 1136
MunI	CAATTG	1 cut(s)	1980
MvaI	CCWGG	1 cut(s)	34
MvnI	CGCG	4 cut(s)	239, 281, 1162, 1399
MwoI	GCNNNNNNNGC	6 cut(s)	24, 111, 316, 582, 931, 1122
NciI	CCSGG	1 cut(s)	1136
NcoI	CCATGG	1 cut(s)	2082
NdeII	GATC	6 cut(s)	877, 976, 1057, 1477, 1582, 1918
NlaIII	CATG	9 cut(s)	110, 580, 929, 938, 1582, 1696, 1832, 2086, 2122
NlaIV	GGNNCC	4 cut(s)	383, 1735, 1736, 1818
NmuCI	GTSAC	4 cut(s)	817, 1093, 1513, 1723
NspI	RCATGY	3 cut(s)	929, 938, 1832
PaeI	GCATGC	1 cut(s)	938
PceI	AGGCCT	2 cut(s)	658, 2233
PcsI	WCGNNNNNNNCGW	3 cut(s)	336, 893, 1637
PfeI	GAWTC	3 cut(s)	448, 1182, 1216
PflFI	GACNNNGTC	1 cut(s)	1721
PkrI	GCNGC	5 cut(s)	198, 218, 270, 1391, 1675
PleI	GAGTC	6 cut(s)	200, 238, 349, 1390, 1779, 1816
PpsI	GAGTC	6 cut(s)	200, 238, 349, 1390, 1779, 1816
Ppu21I	YACGTR	3 cut(s)	993, 1098, 1641
PpuMI	RGGWCCY	1 cut(s)	1734
PsiI	TTATAA	1 cut(s)	1836
Psp124BI	GAGCTC	1 cut(s)	646
Psp5II	RGGWCCY	1 cut(s)	1734
Psp6I	CCWGG	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	4 cut(s)	383, 1735, 1736, 1818
PspPI	GGNCC	4 cut(s)	258, 1734, 1976, 2250
PspPPI	RGGWCCY	1 cut(s)	1734
PstI	CTGCAG	1 cut(s)	1494
PsyI	GACNNNGTC	1 cut(s)	1721
PvuII	CAGCTG	1 cut(s)	1392
RsaI	GTAC	2 cut(s)	1167, 1201
RsaNI	GTAC	2 cut(s)	1166, 1200
RseI	CAYNNNNRTG	1 cut(s)	728
SacI	GAGCTC	1 cut(s)	646
SatI	GCNGC	5 cut(s)	197, 217, 269, 1390, 1674
Sau3AI	GATC	6 cut(s)	877, 976, 1057, 1477, 1582, 1918
Sau96I	GGNCC	4 cut(s)	258, 1734, 1976, 2250
SchI	GAGTC	6 cut(s)	200, 239, 350, 1391, 1779, 1816
ScrFI	CCNGG	2 cut(s)	34, 1136
SduI	GDGCHC	3 cut(s)	312, 646, 2028
SfaNI	GCATC	4 cut(s)	14, 1450, 1918, 2182
SfcI	CTRYAG	2 cut(s)	1490, 1648
SinI	GGWCC	3 cut(s)	1734, 1976, 2250
SmiMI	CAYNNNNRTG	1 cut(s)	728
SnaBI	TACGTA	1 cut(s)	993
SpeI	ACTAGT	1 cut(s)	553
SphI	GCATGC	1 cut(s)	938
SseBI	AGGCCT	2 cut(s)	658, 2233
SsiI	CCGC	5 cut(s)	214, 217, 237, 244, 1397
SspMI	CTAG	5 cut(s)	554, 1173, 1338, 2207, 2235
SstI	GAGCTC	1 cut(s)	646
StuI	AGGCCT	2 cut(s)	658, 2233
StyD4I	CCNGG	2 cut(s)	32, 1134
StyI	CCWWGG	1 cut(s)	2082
TaaI	ACNGT	9 cut(s)	823, 1079, 1093, 1204, 1238, 1263, 1313, 1334, 2144
TaiI	ACGT	6 cut(s)	890, 899, 957, 995, 1100, 1643
TatI	WGTACW	2 cut(s)	1165, 1199
TauI	GCSGC	1 cut(s)	219
TfiI	GAWTC	3 cut(s)	448, 1182, 1216
TscAI	CASTG	4 cut(s)	1050, 1518, 2149, 2202
TseFI	GTSAC	4 cut(s)	817, 1093, 1513, 1723
TseI	GCWGC	4 cut(s)	196, 268, 1389, 1673
Tsp45I	GTSAC	4 cut(s)	817, 1093, 1513, 1723
TspRI	CASTG	4 cut(s)	1050, 1518, 2149, 2202
Tth111I	GACNNNGTC	1 cut(s)	1721
VpaK11BI	GGWCC	3 cut(s)	1734, 1976, 2250
XagI	CCTNNNNNAGG	2 cut(s)	176, 1742
XapI	RAATTY	6 cut(s)	479, 568, 1470, 1507, 2036, 2183
XbaI	TCTAGA	1 cut(s)	1337
XceI	RCATGY	3 cut(s)	929, 938, 1832
XmiI	GTMKAC	3 cut(s)	608, 884, 1783
XspI	CTAG	5 cut(s)	554, 1173, 1338, 2207, 2235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.