Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0015205

Physical Location & Seq

Genomic Coordinates Reverse (-)

13448209 .. 13451148

Gene Structure 2940 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG156300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2301 bp

ATGGCTTCCTCTTTCTGCACCCGATGCTATTCCTGGTCTCTCACACCCACCATAAACCCAACACCTCCACCTCATCGACCCTTCACTTCCCTCTCCTTCCCTCGCCATGAACGCCTCGTCGTTCATTCTTCACTTTCCTATTCTACCCCAGTTTCTACTACCCATCATCCCCTCCCTCAGGACTTCACTCCCCAGCAGCTCCTCGACTCCCTCCGCCGCCAAAACGACGAGTCGTCCGCGCTCCGCCTTTTCGACTGGGCCTCCAAGCAGCCCAGTTTCGCGCCCAACCCCACCATCTACGAGGAGGTGCTCGCCAAGCTCGGAAAGGTCGGGTCTTTCGAGTCGATGAGGGACATCTTGGATGAAATGAAGCACAATGGGTGCCTCAGTAAAGGTAGTTTCTTGATTTTCATCGAGAGTTACGCTATGTTTGATTTGTATGATGAGATTCTGGGTGTTGTGGATGTGATGGAGAGTGAATTCGGGTTGAAACCCGATACCCATTTCTTTAATTTCTTGCTCAATGTGTTGGTTGATGGGAACAAGCTTAAACTAGTCGAAACTGCGAATTCGAGCATGAATAGCAAGGGGATTAAGCCTGATGTGTCTACATTTAACATTTTGATTAAGGCTTTATGTAGAGCTCATCAGATTAGGCCTGCTCTTTTGTTGATGGAGGAGATGGGGAACTATGGTTTGAAGCCTGATGAGAAGACTTTTACCACCATAATGCAGGGTTATATTGAGGAGGGTGAGATGAAAGGTGCATTGAGAATTAGGGAGCAGATGGTAGAGTATGGTTGCCATTGTAGTAATGTGACTATTAATGTTTTGGTTAATGGGTTTTGCAAGGAGGGTAAGGTTGATGAAGCGTTTGGTTTTATTGAGAAGATGGCCAAGGAGGCGTTTTCTCCTGATCAGTATACGTTTAATACGTTGGTGAAGGGTTTGTGCAGGGTGGGGCATGTTAAGCATGCTTTGGAGATTATGGATGTGATGTTGCAAGAGGGGTTTGAGCTGGATATCTATACGTATAACTCTTTGGTTTCGGGGTTGTGTAAGTTGGGTGAAATTGAAGAGGCAGTGGACATTCTTGATCAGATGGTTTCGAGGGACTGTTCCCCAAATACTGTCACGTATAATACTCTGATTAGCACATTGTGCAAGGAGAACCGGGTTGAGGAGGCTACTAAGCTTGCGCGTGTGCTTACTAGCAAGGGAATCATACCTGATGTTTGTACTGTCAATTCGCTGATTCAAGGTCTCTGTTTGAACAGTAATCATAAAGTTGCTATGGAACTGTTTGAGGAGATGAAGATGAAAGGGTGTCAGCCTGATGGGTTTACTTACAGTTTGCTGATTGATAGCTACTGTTCTAGAGGGAAGCTGGAAGAGGCTTTGAGCTTGCTGAAAGATATGGAGTCGAGCGGCTGTGCGCGAAATGCAGTAATATACAATACTCTGATTGATGGGTTCTGCAAAAACAAGAGGATTGAAGATGCAGAGGAGATTTTTGATCAGATGGAACTGCAGGGTATTTCAAGAAATTCAGTGACCTATAACACCCTTATTGATGGCCTTTGCCAGAGTAGGAGGGTGGAGGACGCTTCTCAACTCATGGACCAGATGATAATGGAAGGCTTGAAGCCTGACAAGTTCACCTACAATTCGCTTCTCACGTATTTCTGTAGGTCGGGGGATATTAAGAAGGCAGCAGATATTGTTCAAAACATGACTTCAAATGGGTGCGAACCAGACATTGTCACTTATGGGACCCTAATTCAGGGGTTATGTAAGGCAGGTAGAACTGAGGTTGCGAGTAGACTCCTAAGAAGTTTGCAGATGAAAGGGTTGGTTCCGACTCCACATGCTTATAACCCTGTGATACAAGCACTATTTAAACGAAAGAGAACAACAGAAGCAATGAGGCTTGTTCGTGAAATGATGGAGAAGGCTGATCCTCCAGATGCTATAACATTTAAGATTGTCTTTCGTGGGCTTTGTAATGGTGGAGGACCAATTGGAGAAGCAGTTGATTTTGCGATTGAGATGATGGAGAAAGGGTACTTACCAGAATTTTCATCATTTTCTATGCTGGCTGAAGGACTATATGCTTTATCCATGGAGGATACCCTGATTAAGCTTGTAGATATGATCATGGAGAAAGCAAGAGTTTCAGGCAGTGAAGCTTCAATGATTAGGGGTTTCCTCAAAATCCGAAAATTTAAAGATGCATTGGCCACTCTTGGTGGTATTTTGAACAGCCAAAGGCCTAGAAACTCTTATTGGACCAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

766

Amino Acids

85.99

Weight (kDa)

5.66

Isoelectric Point (pI)

34.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	163 - 313	4.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	165 - 214	5.1e-09	PPR repeat family
PPR_1	PF12854	196 - 228	1.1e-08	PPR repeat
PPR_2	PF13041	202 - 247	3.5e-11	PPR repeat family
TPR_24	PF23276	231 - 328	1e-06	Fungal tetratrico peptide repeats
PPR_2	PF13041	239 - 284	3.8e-11	PPR repeat family
PPR_1	PF12854	267 - 298	1.3e-08	PPR repeat
PPR_2	PF13041	272 - 319	1.7e-15	PPR repeat family
PPR_1	PF12854	304 - 333	1.1e-09	PPR repeat
PPR_2	PF13041	309 - 354	2.2e-13	PPR repeat family
PPR_long	PF17177	319 - 453	2.6e-07	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	319 - 437	3.2e-10	Fungal tetratrico peptide repeats
PPR_3	PF13812	329 - 387	6.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	337 - 369	4.2e-11	PPR repeat
PPR_2	PF13041	341 - 389	2.7e-17	PPR repeat family
PPR	PF01535	343 - 373	1.4e-08	PPR repeat
PPR_1	PF12854	371 - 399	1.1e-11	PPR repeat
PPR_2	PF13041	375 - 423	1.2e-14	PPR repeat family
PPR_3	PF13812	403 - 457	6.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	406 - 439	6.6e-09	PPR repeat
PPR_2	PF13041	410 - 458	2.9e-16	PPR repeat family
PPR	PF01535	414 - 443	2.2e-06	PPR repeat
PPR_1	PF12854	441 - 474	2.6e-11	PPR repeat
PPR	PF01535	448 - 478	4.1e-09	PPR repeat
PPR_long	PF17177	458 - 603	6.8e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	468 - 525	5.6e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	477 - 509	4.6e-13	PPR repeat
PPR_2	PF13041	481 - 529	1.1e-18	PPR repeat family
PPR	PF01535	483 - 513	5.6e-09	PPR repeat
PPR_1	PF12854	512 - 543	2.4e-12	PPR repeat
PPR_2	PF13041	515 - 559	2.5e-15	PPR repeat family
PPR	PF01535	518 - 548	1.1e-07	PPR repeat
PPR_3	PF13812	539 - 595	1.8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	547 - 578	6e-08	PPR repeat
PPR_2	PF13041	552 - 599	3.5e-16	PPR repeat family
PPR_1	PF12854	581 - 611	7.5e-12	PPR repeat
PPR_2	PF13041	585 - 626	9.5e-08	PPR repeat family
PPR_2	PF13041	623 - 669	2.2e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53700
fragaria_vesca	FvH4_6g14250
malus_domestica	MD04G1122700.v1.1 MD12G1138900.v1.1
prunus_persica	Prupe.6G250800_v2.0.a1
pyrus_communis	pycom12g13320
rosa_chinensis	RchiOBHm_Chr3g0467211
rosa_laevigata	RLG00000024519
rosa_multiflora	Rmu_sc0000962.1_g000073
rosa_roxburghii	Rroxscaffold_6G00413820
rosa_rugosa	Rorug03G0085700
rosa_samantha	Rh3AG134200 Rh3BG155500 Rh3CG155100 Rh3DG156300
rosa_wichuraiana	Rw3G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1875
Acc36I	ACCTGC	1 cut(s)	1790
AccB1I	GGYRCC	1 cut(s)	381
AccBSI	CCGCTC	1 cut(s)	1428
AccI	GTMKAC	3 cut(s)	608, 923, 1822
AccII	CGCG	4 cut(s)	239, 281, 1201, 1438
AciI	CCGC	5 cut(s)	214, 217, 237, 244, 1428
AclWI	GGATC	1 cut(s)	1952
AcoI	YGGCCR	2 cut(s)	894, 2238
AcsI	RAATTY	5 cut(s)	479, 568, 1546, 2075, 2222
AcuI	CTGAAG	1 cut(s)	2121
AdeI	CACNNNGTG	1 cut(s)	1161
AfaI	GTAC	2 cut(s)	1240, 2066
AfiI	CCNNNNNNNGG	3 cut(s)	178, 1180, 1783
AhdI	GACNNNNNGTC	1 cut(s)	232
AhlI	ACTAGT	1 cut(s)	553
AjnI	CCWGG	1 cut(s)	32
AjuI	GAANNNNNNNTTGG	2 cut(s)	2269, 2301
Alw21I	GWGCWC	2 cut(s)	312, 646
Alw26I	GTCTC	2 cut(s)	42, 1268
AlwI	GGATC	1 cut(s)	1952
AoxI	GGCC	6 cut(s)	258, 656, 894, 1576, 2238, 2270
ApeKI	GCWGC	3 cut(s)	196, 268, 1712
ApoI	RAATTY	5 cut(s)	479, 568, 1546, 2075, 2222
AseI	ATTAAT	1 cut(s)	825
AspLEI	GCGC	4 cut(s)	241, 283, 1201, 1438
AspS9I	GGNCC	5 cut(s)	258, 1621, 1773, 2015, 2289
AsuC2I	CCSGG	1 cut(s)	1175
AsuHPI	GGTGA	4 cut(s)	764, 952, 1079, 1651
AvaII	GGWCC	4 cut(s)	1621, 1773, 2015, 2289
AxyI	CCTNAGG	1 cut(s)	177
BalI	TGGCCA	2 cut(s)	896, 2240
BanI	GGYRCC	1 cut(s)	381
BanII	GRGCYC	1 cut(s)	646
BbsI	GAAGAC	1 cut(s)	719
Bbv12I	GWGCWC	2 cut(s)	312, 646
BbvI	GCAGC	3 cut(s)	208, 280, 1724
BciT130I	CCWGG	1 cut(s)	34
BciVI	GTATCC	1 cut(s)	2122
BclI	TGATCA	4 cut(s)	916, 1096, 1516, 2154
BcnI	CCSGG	1 cut(s)	1175
BcoDI	GTCTC	2 cut(s)	42, 1268
BcuI	ACTAGT	1 cut(s)	553
BfaI	CTAG	4 cut(s)	554, 1212, 1377, 2274
BfmI	CTRYAG	2 cut(s)	1529, 1687
BfuAI	ACCTGC	1 cut(s)	1790
BfuI	GTATCC	1 cut(s)	2122
BglI	GCCNNNNNGGC	1 cut(s)	902
BisI	GCNGC	5 cut(s)	197, 217, 269, 1429, 1713
BlsI	GCNGC	5 cut(s)	198, 218, 270, 1430, 1714
Bme1390I	CCNGG	2 cut(s)	34, 1175
Bme18I	GGWCC	4 cut(s)	1621, 1773, 2015, 2289
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgT120I	GGNCC	5 cut(s)	258, 1621, 1773, 2015, 2289
BmiI	GGNNCC	4 cut(s)	383, 1774, 1775, 1857
BmrFI	CCNGG	2 cut(s)	34, 1175
BmrI	ACTGGG	3 cut(s)	143, 265, 267
BmsI	GCATC	4 cut(s)	14, 1489, 1957, 2221
BmuI	ACTGGG	3 cut(s)	143, 265, 267
BpiI	GAAGAC	1 cut(s)	719
BpmI	CTGGAG	1 cut(s)	1947
BpuMI	CCSGG	1 cut(s)	1175
BsaAI	YACGTR	3 cut(s)	1032, 1137, 1680
BsaBI	GATNNNNATC	1 cut(s)	410
BsaI	GGTCTC	2 cut(s)	42, 1268
BsaJI	CCNNGG	2 cut(s)	897, 2121
BsaXI	ACNNNNNCTCC	6 cut(s)	245, 275, 2016, 2046, 2048, 2078
Bsc4I	CCNNNNNNNGG	3 cut(s)	178, 1180, 1783
Bse1I	ACTGG	3 cut(s)	149, 260, 273
Bse21I	CCTNAGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	1929
Bse8I	GATNNNNATC	1 cut(s)	410
BseBI	CCWGG	1 cut(s)	34
BseDI	CCNNGG	2 cut(s)	897, 2121
BseGI	GGATG	4 cut(s)	166, 367, 469, 997
BseJI	GATNNNNATC	1 cut(s)	410
BseLI	CCNNNNNNNGG	3 cut(s)	178, 1180, 1783
BseMI	GCAATG	1 cut(s)	1929
BseMII	CTCAG	3 cut(s)	191, 400, 1800
BseNI	ACTGG	3 cut(s)	149, 260, 273
BseRI	GAGGAG	7 cut(s)	191, 317, 692, 761, 1196, 1322, 1520
BseXI	GCAGC	3 cut(s)	208, 280, 1724
BseYI	CCCAGC	1 cut(s)	192
BsgI	GTGCAG	1 cut(s)	973
Bsh1236I	CGCG	4 cut(s)	239, 281, 1201, 1438
BshFI	GGCC	6 cut(s)	260, 658, 896, 1578, 2240, 2272
BshNI	GGYRCC	1 cut(s)	381
BsiHKAI	GWGCWC	2 cut(s)	312, 646
BsiSI	CCGG	1 cut(s)	1174
BslFI	GGGAC	3 cut(s)	365, 1127, 1786
BslI	CCNNNNNNNGG	3 cut(s)	178, 1180, 1783
BsmAI	GTCTC	2 cut(s)	42, 1268
BsmFI	GGGAC	3 cut(s)	365, 1127, 1786
BsnI	GGCC	6 cut(s)	260, 658, 896, 1578, 2240, 2272
Bso31I	GGTCTC	2 cut(s)	42, 1268
Bsp1286I	GDGCHC	2 cut(s)	312, 646
Bsp143I	GATC	5 cut(s)	916, 1096, 1516, 1957, 2154
Bsp19I	CCATGG	1 cut(s)	2121
BspACI	CCGC	5 cut(s)	214, 217, 237, 244, 1428
BspANI	GGCC	6 cut(s)	260, 658, 896, 1578, 2240, 2272
BspCNI	CTCAG	3 cut(s)	190, 399, 1801
BspFNI	CGCG	4 cut(s)	239, 281, 1201, 1438
BspLI	GGNNCC	4 cut(s)	383, 1774, 1775, 1857
BspMAI	CTGCAG	1 cut(s)	1533
BspMI	ACCTGC	1 cut(s)	1790
BspPI	GGATC	1 cut(s)	1952
BspT107I	GGYRCC	1 cut(s)	381
BspTNI	GGTCTC	2 cut(s)	42, 1268
BsrBI	CCGCTC	1 cut(s)	1428
BsrDI	GCAATG	1 cut(s)	1929
BsrI	ACTGG	3 cut(s)	149, 260, 273
BssECI	CCNNGG	2 cut(s)	897, 2121
BssMI	GATC	5 cut(s)	916, 1096, 1516, 1957, 2154
BssNAI	GTATAC	1 cut(s)	924
BssT1I	CCWWGG	2 cut(s)	897, 2121
Bst1107I	GTATAC	1 cut(s)	924
Bst2UI	CCWGG	1 cut(s)	34
Bst4CI	ACNGT	7 cut(s)	1118, 1132, 1243, 1277, 1302, 1352, 1373
Bst6I	CTCTTC	2 cut(s)	1071, 1386
BstAPI	GCANNNNNTGC	2 cut(s)	24, 1161
BstBAI	YACGTR	3 cut(s)	1032, 1137, 1680
BstC8I	GCNNGC	6 cut(s)	312, 660, 975, 1197, 1406, 2097
BstDEI	CTNAG	5 cut(s)	177, 386, 1191, 1809, 1829
BstDSI	CCRYGG	1 cut(s)	2121
BstENI	CCTNNNNNAGG	2 cut(s)	176, 1781
BstF5I	GGATG	4 cut(s)	166, 367, 469, 997
BstFNI	CGCG	4 cut(s)	239, 281, 1201, 1438
BstHHI	GCGC	4 cut(s)	241, 283, 1201, 1438
BstKTI	GATC	5 cut(s)	919, 1099, 1519, 1960, 2157
BstMAI	GTCTC	2 cut(s)	42, 1268
BstMBI	GATC	5 cut(s)	916, 1096, 1516, 1957, 2154
BstMWI	GCNNNNNNNGC	8 cut(s)	24, 111, 316, 582, 902, 970, 1161, 1442
BstNI	CCWGG	1 cut(s)	34
BstNSI	RCATGY	3 cut(s)	968, 977, 1871
BstSCI	CCNGG	2 cut(s)	32, 1173
BstSFI	CTRYAG	2 cut(s)	1529, 1687
BstSNI	TACGTA	1 cut(s)	1032
BstUI	CGCG	4 cut(s)	239, 281, 1201, 1438
BstV1I	GCAGC	3 cut(s)	208, 280, 1724
BstV2I	GAAGAC	1 cut(s)	719
BstZ17I	GTATAC	1 cut(s)	924
Bsu36I	CCTNAGG	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	2122
BsuRI	GGCC	6 cut(s)	260, 658, 896, 1578, 2240, 2272
BtgI	CCRYGG	1 cut(s)	2121
BtsCI	GGATG	4 cut(s)	166, 367, 469, 997
BtsI	GCAGTG	2 cut(s)	1089, 2188
BtsIMutI	CAGTG	3 cut(s)	1089, 1557, 2188
BveI	ACCTGC	1 cut(s)	1790
Cac8I	GCNNGC	6 cut(s)	312, 660, 975, 1197, 1406, 2097
CfoI	GCGC	4 cut(s)	241, 283, 1201, 1438
Cfr13I	GGNCC	5 cut(s)	258, 1621, 1773, 2015, 2289
CseI	GACGC	1 cut(s)	1613
Csp6I	GTAC	2 cut(s)	1239, 2065
CviAII	CATG	9 cut(s)	107, 577, 965, 974, 1618, 1732, 1868, 2122, 2158
CviQI	GTAC	2 cut(s)	1239, 2065
DdeI	CTNAG	5 cut(s)	177, 386, 1191, 1809, 1829
DpnI	GATC	5 cut(s)	918, 1098, 1518, 1959, 2156
DpnII	GATC	5 cut(s)	916, 1096, 1516, 1957, 2154
DraI	TTTAAA	2 cut(s)	1900, 2227
DraIII	CACNNNGTG	1 cut(s)	1161
DriI	GACNNNNNGTC	1 cut(s)	232
EaeI	YGGCCR	2 cut(s)	894, 2238
Eam1104I	CTCTTC	2 cut(s)	1071, 1386
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	2 cut(s)	1071, 1386
EciI	GGCGGA	2 cut(s)	203, 233
Ecl136II	GAGCTC	1 cut(s)	644
Eco105I	TACGTA	1 cut(s)	1032
Eco130I	CCWWGG	2 cut(s)	897, 2121
Eco147I	AGGCCT	2 cut(s)	658, 2272
Eco24I	GRGCYC	1 cut(s)	646
Eco31I	GGTCTC	2 cut(s)	42, 1268
Eco32I	GATATC	1 cut(s)	1024
Eco47I	GGWCC	4 cut(s)	1621, 1773, 2015, 2289
Eco53kI	GAGCTC	1 cut(s)	644
Eco57I	CTGAAG	1 cut(s)	2121
Eco81I	CCTNAGG	1 cut(s)	177
EcoICRI	GAGCTC	1 cut(s)	644
EcoNI	CCTNNNNNAGG	2 cut(s)	176, 1781
EcoO109I	RGGNCCY	1 cut(s)	1773
EcoRI	GAATTC	2 cut(s)	479, 568
EcoRII	CCWGG	1 cut(s)	32
EcoRV	GATATC	1 cut(s)	1024
EcoT14I	CCWWGG	2 cut(s)	897, 2121
EcoT22I	ATGCAT	1 cut(s)	2236
EcoT38I	GRGCYC	1 cut(s)	646
ErhI	CCWWGG	2 cut(s)	897, 2121
FaeI	CATG	9 cut(s)	110, 580, 968, 977, 1621, 1735, 1871, 2125, 2161
FalI	AAGNNNNNCTT	2 cut(s)	1973, 2005
FaqI	GGGAC	3 cut(s)	365, 1127, 1786
FatI	CATG	9 cut(s)	106, 576, 964, 973, 1617, 1731, 1867, 2121, 2157
FbaI	TGATCA	4 cut(s)	916, 1096, 1516, 2154
FblI	GTMKAC	3 cut(s)	608, 923, 1822
Fnu4HI	GCNGC	5 cut(s)	197, 217, 269, 1429, 1713
FokI	GGATG	4 cut(s)	153, 374, 476, 1004
FriOI	GRGCYC	1 cut(s)	646
Fsp4HI	GCNGC	5 cut(s)	197, 217, 269, 1429, 1713
FspBI	CTAG	4 cut(s)	554, 1212, 1377, 2274
GlaI	GCGC	4 cut(s)	240, 282, 1200, 1437
GluI	GCNGC	5 cut(s)	197, 217, 269, 1429, 1713
GsaI	CCCAGC	1 cut(s)	196
GsuI	CTGGAG	1 cut(s)	1947
HaeIII	GGCC	6 cut(s)	260, 658, 896, 1578, 2240, 2272
HapII	CCGG	1 cut(s)	1174
HgaI	GACGC	1 cut(s)	1613
HhaI	GCGC	4 cut(s)	241, 283, 1201, 1438
Hin1II	CATG	9 cut(s)	110, 580, 968, 977, 1621, 1735, 1871, 2125, 2161
Hin6I	GCGC	4 cut(s)	239, 281, 1199, 1436
HinP1I	GCGC	4 cut(s)	239, 281, 1199, 1436
HindIII	AAGCTT	4 cut(s)	545, 1193, 2141, 2187
HinfI	GANTC	9 cut(s)	206, 230, 341, 448, 1221, 1255, 1421, 1824, 1861
HpaII	CCGG	1 cut(s)	1174
HphI	GGTGA	4 cut(s)	764, 952, 1079, 1651
Hpy166II	GTNNAC	6 cut(s)	609, 924, 1087, 1344, 1659, 1823
Hpy188I	TCNGA	8 cut(s)	323, 651, 1101, 1149, 1464, 1521, 1860, 2219
Hpy188III	TCNNGA	9 cut(s)	179, 403, 415, 914, 1094, 1377, 1542, 1937, 1964
Hpy8I	GTNNAC	6 cut(s)	609, 924, 1087, 1344, 1659, 1823
Hpy99I	CGWCG	2 cut(s)	122, 230
HpyAV	CCTTC	7 cut(s)	91, 106, 937, 1631, 1702, 1945, 2096
HpyCH4III	ACNGT	7 cut(s)	1118, 1132, 1243, 1277, 1302, 1352, 1373
HpyCH4IV	ACGT	5 cut(s)	926, 935, 1031, 1136, 1679
HpyF10VI	GCNNNNNNNGC	8 cut(s)	24, 111, 316, 582, 902, 970, 1161, 1442
HpyF3I	CTNAG	5 cut(s)	177, 386, 1191, 1809, 1829
HpySE526I	ACGT	5 cut(s)	926, 935, 1031, 1136, 1679
Hsp92II	CATG	9 cut(s)	110, 580, 968, 977, 1621, 1735, 1871, 2125, 2161
HspAI	GCGC	4 cut(s)	239, 281, 1199, 1436
KflI	GGGWCCC	1 cut(s)	1773
Ksp22I	TGATCA	4 cut(s)	916, 1096, 1516, 2154
Kzo9I	GATC	5 cut(s)	916, 1096, 1516, 1957, 2154
LmnI	GCTCC	3 cut(s)	204, 246, 781
Lsp1109I	GCAGC	3 cut(s)	208, 280, 1724
LweI	GCATC	4 cut(s)	14, 1489, 1957, 2221
MaeI	CTAG	4 cut(s)	554, 1212, 1377, 2274
MaeII	ACGT	5 cut(s)	926, 935, 1031, 1136, 1679
MaeIII	GTNAC	5 cut(s)	419, 817, 1132, 1552, 1762
MalI	GATC	5 cut(s)	918, 1098, 1518, 1959, 2156
MbiI	CCGCTC	1 cut(s)	1428
MboI	GATC	5 cut(s)	916, 1096, 1516, 1957, 2154
MboII	GAAGA	7 cut(s)	120, 724, 901, 1088, 1327, 1403, 1508
MfeI	CAATTG	1 cut(s)	2019
MhlI	GDGCHC	2 cut(s)	312, 646
MlsI	TGGCCA	2 cut(s)	896, 2240
MluNI	TGGCCA	2 cut(s)	896, 2240
MlyI	GAGTC	6 cut(s)	200, 239, 350, 1430, 1818, 1855
MmeI	TCCRAC	1 cut(s)	1883
Mox20I	TGGCCA	2 cut(s)	896, 2240
Mph1103I	ATGCAT	1 cut(s)	2236
MscI	TGGCCA	2 cut(s)	896, 2240
MslI	CAYNNNNRTG	1 cut(s)	728
Msp20I	TGGCCA	2 cut(s)	896, 2240
MspI	CCGG	1 cut(s)	1174
MspR9I	CCNGG	2 cut(s)	34, 1175
MunI	CAATTG	1 cut(s)	2019
MvaI	CCWGG	1 cut(s)	34
MvnI	CGCG	4 cut(s)	239, 281, 1201, 1438
MwoI	GCNNNNNNNGC	8 cut(s)	24, 111, 316, 582, 902, 970, 1161, 1442
NciI	CCSGG	1 cut(s)	1175
NcoI	CCATGG	1 cut(s)	2121
NdeII	GATC	5 cut(s)	916, 1096, 1516, 1957, 2154
NlaIII	CATG	9 cut(s)	110, 580, 968, 977, 1621, 1735, 1871, 2125, 2161
NlaIV	GGNNCC	4 cut(s)	383, 1774, 1775, 1857
NmuCI	GTSAC	4 cut(s)	817, 1132, 1552, 1762
NsiI	ATGCAT	1 cut(s)	2236
NspI	RCATGY	3 cut(s)	968, 977, 1871
PaeI	GCATGC	1 cut(s)	977
PceI	AGGCCT	2 cut(s)	658, 2272
PcsI	WCGNNNNNNNCGW	3 cut(s)	336, 932, 1676
PfeI	GAWTC	3 cut(s)	448, 1221, 1255
PflFI	GACNNNGTC	1 cut(s)	1760
PkrI	GCNGC	5 cut(s)	198, 218, 270, 1430, 1714
PleI	GAGTC	6 cut(s)	200, 238, 349, 1429, 1818, 1855
PpsI	GAGTC	6 cut(s)	200, 238, 349, 1429, 1818, 1855
Ppu21I	YACGTR	3 cut(s)	1032, 1137, 1680
PpuMI	RGGWCCY	1 cut(s)	1773
PshBI	ATTAAT	1 cut(s)	825
PsiI	TTATAA	1 cut(s)	1875
Psp124BI	GAGCTC	1 cut(s)	646
Psp5II	RGGWCCY	1 cut(s)	1773
Psp6I	CCWGG	1 cut(s)	32
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	32
PspN4I	GGNNCC	4 cut(s)	383, 1774, 1775, 1857
PspPI	GGNCC	5 cut(s)	258, 1621, 1773, 2015, 2289
PspPPI	RGGWCCY	1 cut(s)	1773
PstI	CTGCAG	1 cut(s)	1533
PsyI	GACNNNGTC	1 cut(s)	1760
RsaI	GTAC	2 cut(s)	1240, 2066
RsaNI	GTAC	2 cut(s)	1239, 2065
RseI	CAYNNNNRTG	1 cut(s)	728
SacI	GAGCTC	1 cut(s)	646
SatI	GCNGC	5 cut(s)	197, 217, 269, 1429, 1713
Sau3AI	GATC	5 cut(s)	916, 1096, 1516, 1957, 2154
Sau96I	GGNCC	5 cut(s)	258, 1621, 1773, 2015, 2289
SchI	GAGTC	6 cut(s)	200, 239, 350, 1430, 1818, 1855
ScrFI	CCNGG	2 cut(s)	34, 1175
SduI	GDGCHC	2 cut(s)	312, 646
SfaNI	GCATC	4 cut(s)	14, 1489, 1957, 2221
SfcI	CTRYAG	2 cut(s)	1529, 1687
SinI	GGWCC	4 cut(s)	1621, 1773, 2015, 2289
SmiMI	CAYNNNNRTG	1 cut(s)	728
SnaBI	TACGTA	1 cut(s)	1032
SpeI	ACTAGT	1 cut(s)	553
SphI	GCATGC	1 cut(s)	977
SseBI	AGGCCT	2 cut(s)	658, 2272
SsiI	CCGC	5 cut(s)	214, 217, 237, 244, 1428
SspMI	CTAG	4 cut(s)	554, 1212, 1377, 2274
SstI	GAGCTC	1 cut(s)	646
StuI	AGGCCT	2 cut(s)	658, 2272
StyD4I	CCNGG	2 cut(s)	32, 1173
StyI	CCWWGG	2 cut(s)	897, 2121
TaaI	ACNGT	7 cut(s)	1118, 1132, 1243, 1277, 1302, 1352, 1373
TaiI	ACGT	5 cut(s)	929, 938, 1034, 1139, 1682
TatI	WGTACW	1 cut(s)	1238
TauI	GCSGC	2 cut(s)	219, 1431
TfiI	GAWTC	3 cut(s)	448, 1221, 1255
TscAI	CASTG	3 cut(s)	1089, 1557, 2188
TseFI	GTSAC	4 cut(s)	817, 1132, 1552, 1762
TseI	GCWGC	3 cut(s)	196, 268, 1712
Tsp45I	GTSAC	4 cut(s)	817, 1132, 1552, 1762
TspRI	CASTG	3 cut(s)	1089, 1557, 2188
Tth111I	GACNNNGTC	1 cut(s)	1760
VpaK11BI	GGWCC	4 cut(s)	1621, 1773, 2015, 2289
VspI	ATTAAT	1 cut(s)	825
XagI	CCTNNNNNAGG	2 cut(s)	176, 1781
XapI	RAATTY	5 cut(s)	479, 568, 1546, 2075, 2222
XbaI	TCTAGA	1 cut(s)	1376
XceI	RCATGY	3 cut(s)	968, 977, 1871
XmiI	GTMKAC	3 cut(s)	608, 923, 1822
XspI	CTAG	4 cut(s)	554, 1212, 1377, 2274
Zsp2I	ATGCAT	1 cut(s)	2236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.