Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015205

Physical Location & Seq

Genomic Coordinates Forward (+)

36644819 .. 36647131

Gene Structure 2313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024519

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2313 bp

ATGGCTTCCTCTTTCTGCACCCGATGCTATTCCTGGTCTCTCACACCCTGCATAAACCCAACACCTCCGCCTCTCTCTTCCCCTCTTCGACCCTTCACTTCTCTCTCCTTCCCTCGCCATGAACGCCTCGTCGTTCATTCTTCACTTTCCTATTCTACCCCAATTTCTACTACCCATCATCCCCTCCCCCAGGACTTCACTCCCCAGCAGCTCCTCGACTCCCTCCGCCGCCAAAACGACGAGTCGTCCGCGCTCCGCCTCTTCGACTGGGCCTCCAAGCAGCCCAGTTTCGCGCCAAACCCCACCATCTACGAGGAGGTGCTCGCCAAGCTCGGAAAGGTCGGGTCTTTCGAGTCGATGAGGGACATCTTGGATGAAATGAAGCACAATGGGTGCCTCAGTAAAGGTAGTTTCTTGATTTTCATTGAGAGCTACGCTATGTTTGATTTGCATGATGAGATTCTGGGTGTTGTGGATGTGATGGAGAGTGAATTCGGGTTGAAACCCGATACCCATTTCTTTAATTTCTTGCTCAATGTGTTGGTTGATGGGAACAAGCTTAAACTAGTCGAAACTGCGAATTCGTGCATGAATAGCAAGGGGATTAAGCCTGATGTGTCTACATTTAACATTTTGATTAAGGCTTTATGTAGAGCTCATCAGATTAGGCCTGCTCTTTTGTTGATGGAGGAGATGGGGAACTATGGTTTGAAGCCTGATGAGAAGACTTTTACAACCATAATGCAGGGTTATATTGAGGAGGGTGAGATGAAAGGTGCATTGAGAATTAGGGAGCAGATGGTAGAGTATGGTTGCCATTGTAGTAATGTGACTGTTAATGTTTTGGTTAATGGGTTTTGCAAGGAGGGTAGGGTTGATGAAGCGTTTAGTTTTATTGACAAGATGGCCAAGGAGGGGTTTTCTCCTGATCAGTACACGTTTAATACGTTGGTGAAGGGTTTGTGCAGGGTGGGGCATGTTAGGCATGCTTTGGAGATTATGGACGTGATGTTGCAAGAGGGGTTTGATCTGGATATCTATACGTATAACTCTTTGGTTTCGGGGTTGTGTAAGTTGGGTGAAGTTGAAGAGGCGGTGGACATTCTTGATCAGATGGTTTCGAGGGACTGTTCCCCAAATACCGTCACGTATAATACTCTGATTAGCACATTGTGCAAGGAGAACCGGGTTGAGGAGGCGACTAAGCTGGCGCGTGTGCTTACTAGCAAGGGAATTATACCTGATGTTTGTACTGTCAATTCACTGATTCAAGGTCTCTGCTTGAACAGTAATCATAAAGTTGCTATGGAACTGTTTGAGGAGATGAAGATGAAAGGGTGTCAGCCTGATGGGTTTACTTACAGTTTGCTTATTGATAGCTACTGTTCTAGAGGGAAGCTGGAAGAGGCTTTGAGCTTGCTGAAAGATATGGAGTCGAGCAGCTGTCCACGAAATGCAGTAATATACAATACTCTGATTGATGGGTTCTGCAAAAACAAGAGGATTGAAGATGCAGAGAATATTTTTGATCAGATGGAACTGCAGGGTATTTCAAGAAATTCAGTGACCTATAACACCCTTATTGATGGCCTTTGCCAGAGTAGGAGGGTGGAGGACGCTTCTCAACTCATGGATCAGATGATAATGGAAGGCTTGAAGCCTGACAAGTTCACCTACAATTCGCTTCTCACGTATTTCTGTAGGTCGGGGGATATTAAGAAGGCAGCCGATATTGTTCAAAACATGACTTCAAATGGGTGTGAACCAGACATTGTCACTTATGGGACCCTAATTCAGGGGTTATGTAAGGCAGGTAGAACTGAGGTTGCGAGTAGACTCCTAAGAAGTTTGCAGATGAAAGGGTTGGTTCCGACTCCACATGCTTATAACCCTGTGATACAAGCACTATTTAAACGAAAGAGAACAACAGAAGCAATGAGGCTTGTTCGAGAAATGATGGAAAAAGCTGATCCTCCAGATGCTCTAACATTTAAGATTGTCTTTCGTGGGCTTTGTAATGGTGGAGGACCAATTGGAGAAGCAGTTGATTTTGCGATTGAGATGATGGAGAAAGGGCACTTACCAGAATTTTCTTCATTTTCTATGCTGGCTGAAGGACTATACGCTTTATCCATGGAGGATACCCTGATTAAGCTTGTAGATATGATCATGGAGAAAGCAAGAGTTTCAGACAGTGAAGCTTCAATGATAAGGGGTTTCCTCAAAATCAGAAAATTTAAAGATGCATTGGCCACTATTGGTGGCATTTTGAATAGCCAAAGGCCTAGAAAATCTTATTGGACCAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

771

Amino Acids

86.46

Weight (kDa)

5.76

Isoelectric Point (pI)

35.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	168 - 317	6e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	169 - 218	3.4e-08	PPR repeat family
PPR_1	PF12854	200 - 232	1.1e-08	PPR repeat
PPR_2	PF13041	204 - 251	1e-12	PPR repeat family
TPR_24	PF23276	236 - 333	4.3e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	243 - 288	3.4e-11	PPR repeat family
PPR_1	PF12854	271 - 302	1.9e-10	PPR repeat
PPR_2	PF13041	276 - 323	8.8e-17	PPR repeat family
PPR	PF01535	277 - 307	2.2e-07	PPR repeat
PPR_1	PF12854	306 - 337	3.5e-10	PPR repeat
PPR_2	PF13041	313 - 358	7.4e-13	PPR repeat family
PPR_long	PF17177	322 - 458	1.8e-07	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	323 - 441	8.7e-10	Fungal tetratrico peptide repeats
PPR_3	PF13812	333 - 391	2.2e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	341 - 373	3.3e-11	PPR repeat
PPR_2	PF13041	345 - 393	1.5e-17	PPR repeat family
PPR	PF01535	347 - 377	9.2e-09	PPR repeat
PPR_1	PF12854	375 - 403	1.1e-11	PPR repeat
PPR_2	PF13041	379 - 427	1.2e-14	PPR repeat family
PPR_3	PF13812	407 - 461	6.5e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	410 - 443	6.6e-09	PPR repeat
PPR_2	PF13041	414 - 462	2.9e-16	PPR repeat family
PPR	PF01535	418 - 447	2.3e-06	PPR repeat
PPR_1	PF12854	445 - 478	2.6e-11	PPR repeat
PPR	PF01535	452 - 482	4.1e-08	PPR repeat
PPR_long	PF17177	462 - 607	1.2e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	472 - 529	4.4e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	482 - 513	8.1e-12	PPR repeat
PPR_2	PF13041	485 - 533	1.8e-18	PPR repeat family
PPR	PF01535	487 - 517	2.5e-08	PPR repeat
PPR_1	PF12854	516 - 547	2.4e-12	PPR repeat
PPR_2	PF13041	519 - 563	2.5e-15	PPR repeat family
PPR	PF01535	522 - 552	1.1e-07	PPR repeat
PPR_3	PF13812	543 - 599	1.8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	551 - 582	6e-08	PPR repeat
PPR_2	PF13041	554 - 603	7.4e-17	PPR repeat family
PPR_1	PF12854	585 - 615	7.5e-12	PPR repeat
PPR_2	PF13041	589 - 630	9.6e-08	PPR repeat family
PPR_2	PF13041	627 - 673	4e-11	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53700
fragaria_vesca	FvH4_6g14250
malus_domestica	MD04G1122700.v1.1 MD12G1138900.v1.1
prunus_persica	Prupe.6G250800_v2.0.a1
pyrus_communis	pycom12g13320
rosa_chinensis	RchiOBHm_Chr3g0467211
rosa_laevigata	RLG00000024519
rosa_multiflora	Rmu_sc0000962.1_g000073
rosa_roxburghii	Rroxscaffold_6G00413820
rosa_rugosa	Rorug03G0085700
rosa_samantha	Rh3AG134200 Rh3BG155500 Rh3CG155100 Rh3DG156300
rosa_wichuraiana	Rw3G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1887
Acc36I	ACCTGC	1 cut(s)	1802
AccB1I	GGYRCC	1 cut(s)	393
AccI	GTMKAC	2 cut(s)	620, 1834
AccII	CGCG	3 cut(s)	251, 293, 1213
AciI	CCGC	6 cut(s)	68, 226, 229, 249, 256, 1094
AclWI	GGATC	2 cut(s)	1641, 1964
AcoI	YGGCCR	2 cut(s)	906, 2250
AcsI	RAATTY	5 cut(s)	491, 580, 1558, 2087, 2234
AcuI	CTGAAG	1 cut(s)	2133
AdeI	CACNNNGTG	1 cut(s)	1173
AfaI	GTAC	2 cut(s)	935, 1252
AfiI	CCNNNNNNNGG	4 cut(s)	190, 915, 1192, 1795
AflIII	ACRYGT	1 cut(s)	936
AhdI	GACNNNNNGTC	1 cut(s)	244
AhlI	ACTAGT	1 cut(s)	565
AjiI	CACGTC	1 cut(s)	1006
AjnI	CCWGG	2 cut(s)	32, 189
AjuI	GAANNNNNNNTTGG	2 cut(s)	2281, 2313
Alw21I	GWGCWC	2 cut(s)	324, 658
Alw26I	GTCTC	2 cut(s)	42, 1280
AlwI	GGATC	2 cut(s)	1641, 1964
AoxI	GGCC	6 cut(s)	270, 668, 906, 1588, 2250, 2282
ApeKI	GCWGC	4 cut(s)	208, 280, 1440, 1724
ApoI	RAATTY	5 cut(s)	491, 580, 1558, 2087, 2234
AspLEI	GCGC	3 cut(s)	253, 295, 1213
AspS9I	GGNCC	4 cut(s)	270, 1785, 2027, 2301
AsuC2I	CCSGG	1 cut(s)	1187
AsuHPI	GGTGA	4 cut(s)	776, 964, 1091, 1663
AvaII	GGWCC	3 cut(s)	1785, 2027, 2301
BaeGI	GKGCMC	1 cut(s)	2079
BalI	TGGCCA	2 cut(s)	908, 2252
BanI	GGYRCC	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	658
BbsI	GAAGAC	1 cut(s)	731
Bbv12I	GWGCWC	2 cut(s)	324, 658
BbvI	GCAGC	4 cut(s)	220, 292, 1452, 1736
BciT130I	CCWGG	2 cut(s)	34, 191
BciVI	GTATCC	1 cut(s)	2134
BclI	TGATCA	4 cut(s)	928, 1108, 1528, 2166
BcnI	CCSGG	1 cut(s)	1187
BcoDI	GTCTC	2 cut(s)	42, 1280
BcuI	ACTAGT	1 cut(s)	565
BfaI	CTAG	4 cut(s)	566, 1224, 1389, 2286
BfmI	CTRYAG	2 cut(s)	1541, 1699
BfuAI	ACCTGC	1 cut(s)	1802
BfuI	GTATCC	1 cut(s)	2134
BisI	GCNGC	5 cut(s)	209, 229, 281, 1441, 1725
BlsI	GCNGC	5 cut(s)	210, 230, 282, 1442, 1726
Bme1390I	CCNGG	3 cut(s)	34, 191, 1187
Bme18I	GGWCC	3 cut(s)	1785, 2027, 2301
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmgBI	CACGTC	1 cut(s)	1006
BmgT120I	GGNCC	4 cut(s)	270, 1785, 2027, 2301
BmiI	GGNNCC	4 cut(s)	395, 1786, 1787, 1869
BmrFI	CCNGG	3 cut(s)	34, 191, 1187
BmrI	ACTGGG	2 cut(s)	277, 279
BmsI	GCATC	4 cut(s)	14, 1501, 1969, 2233
BmuI	ACTGGG	2 cut(s)	277, 279
BpiI	GAAGAC	1 cut(s)	731
BpmI	CTGGAG	1 cut(s)	1959
BpuMI	CCSGG	1 cut(s)	1187
BsaAI	YACGTR	3 cut(s)	1044, 1149, 1692
BsaI	GGTCTC	2 cut(s)	42, 1280
BsaJI	CCNNGG	3 cut(s)	189, 909, 2133
BsaXI	ACNNNNNCTCC	4 cut(s)	257, 287, 2028, 2058
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 915, 1192, 1795
Bse1I	ACTGG	2 cut(s)	272, 285
Bse3DI	GCAATG	1 cut(s)	1941
BseBI	CCWGG	2 cut(s)	34, 191
BseDI	CCNNGG	3 cut(s)	189, 909, 2133
BseGI	GGATG	3 cut(s)	178, 379, 481
BseLI	CCNNNNNNNGG	4 cut(s)	190, 915, 1192, 1795
BseMI	GCAATG	1 cut(s)	1941
BseMII	CTCAG	2 cut(s)	412, 1812
BseNI	ACTGG	2 cut(s)	272, 285
BseRI	GAGGAG	6 cut(s)	203, 329, 704, 773, 1208, 1334
BseSI	GKGCMC	1 cut(s)	2079
BseXI	GCAGC	4 cut(s)	220, 292, 1452, 1736
BseYI	CCCAGC	1 cut(s)	204
BsgI	GTGCAG	1 cut(s)	985
Bsh1236I	CGCG	3 cut(s)	251, 293, 1213
BshFI	GGCC	6 cut(s)	272, 670, 908, 1590, 2252, 2284
BshNI	GGYRCC	1 cut(s)	393
BsiHKAI	GWGCWC	2 cut(s)	324, 658
BsiSI	CCGG	1 cut(s)	1186
BslFI	GGGAC	3 cut(s)	377, 1139, 1798
BslI	CCNNNNNNNGG	4 cut(s)	190, 915, 1192, 1795
BsmAI	GTCTC	2 cut(s)	42, 1280
BsmFI	GGGAC	3 cut(s)	377, 1139, 1798
BsnI	GGCC	6 cut(s)	272, 670, 908, 1590, 2252, 2284
Bso31I	GGTCTC	2 cut(s)	42, 1280
Bsp1286I	GDGCHC	3 cut(s)	324, 658, 2079
Bsp143I	GATC	7 cut(s)	928, 1027, 1108, 1528, 1633, 1969, 2166
Bsp19I	CCATGG	1 cut(s)	2133
BspACI	CCGC	6 cut(s)	68, 226, 229, 249, 256, 1094
BspANI	GGCC	6 cut(s)	272, 670, 908, 1590, 2252, 2284
BspCNI	CTCAG	2 cut(s)	411, 1813
BspFNI	CGCG	3 cut(s)	251, 293, 1213
BspLI	GGNNCC	4 cut(s)	395, 1786, 1787, 1869
BspMAI	CTGCAG	1 cut(s)	1545
BspMI	ACCTGC	1 cut(s)	1802
BspPI	GGATC	2 cut(s)	1641, 1964
BspT107I	GGYRCC	1 cut(s)	393
BspTNI	GGTCTC	2 cut(s)	42, 1280
BsrDI	GCAATG	1 cut(s)	1941
BsrI	ACTGG	2 cut(s)	272, 285
BssECI	CCNNGG	3 cut(s)	189, 909, 2133
BssMI	GATC	7 cut(s)	928, 1027, 1108, 1528, 1633, 1969, 2166
BssT1I	CCWWGG	2 cut(s)	909, 2133
Bst2UI	CCWGG	2 cut(s)	34, 191
Bst4CI	ACNGT	9 cut(s)	835, 1130, 1144, 1255, 1289, 1314, 1364, 1385, 2195
Bst6I	CTCTTC	5 cut(s)	82, 90, 266, 1083, 1398
BstAPI	GCANNNNNTGC	2 cut(s)	24, 1173
BstBAI	YACGTR	3 cut(s)	1044, 1149, 1692
BstC8I	GCNNGC	6 cut(s)	324, 672, 987, 1209, 1418, 2109
BstDEI	CTNAG	4 cut(s)	398, 1203, 1821, 1841
BstDSI	CCRYGG	1 cut(s)	2133
BstENI	CCTNNNNNAGG	2 cut(s)	188, 1793
BstF5I	GGATG	3 cut(s)	178, 379, 481
BstFNI	CGCG	3 cut(s)	251, 293, 1213
BstHHI	GCGC	3 cut(s)	253, 295, 1213
BstKTI	GATC	7 cut(s)	931, 1030, 1111, 1531, 1636, 1972, 2169
BstMAI	GTCTC	2 cut(s)	42, 1280
BstMBI	GATC	7 cut(s)	928, 1027, 1108, 1528, 1633, 1969, 2166
BstMWI	GCNNNNNNNGC	6 cut(s)	24, 123, 328, 594, 982, 1173
BstNI	CCWGG	2 cut(s)	34, 191
BstNSI	RCATGY	3 cut(s)	980, 989, 1883
BstSCI	CCNGG	3 cut(s)	32, 189, 1185
BstSFI	CTRYAG	2 cut(s)	1541, 1699
BstSLI	GKGCMC	1 cut(s)	2079
BstSNI	TACGTA	1 cut(s)	1044
BstUI	CGCG	3 cut(s)	251, 293, 1213
BstV1I	GCAGC	4 cut(s)	220, 292, 1452, 1736
BstV2I	GAAGAC	1 cut(s)	731
BsuI	GTATCC	1 cut(s)	2134
BsuRI	GGCC	6 cut(s)	272, 670, 908, 1590, 2252, 2284
BtgI	CCRYGG	1 cut(s)	2133
BtrI	CACGTC	1 cut(s)	1006
BtsCI	GGATG	3 cut(s)	178, 379, 481
BtsIMutI	CAGTG	3 cut(s)	1262, 1569, 2200
BveI	ACCTGC	1 cut(s)	1802
Cac8I	GCNNGC	6 cut(s)	324, 672, 987, 1209, 1418, 2109
CfoI	GCGC	3 cut(s)	253, 295, 1213
Cfr13I	GGNCC	4 cut(s)	270, 1785, 2027, 2301
CseI	GACGC	1 cut(s)	1625
Csp6I	GTAC	2 cut(s)	934, 1251
CviQI	GTAC	2 cut(s)	934, 1251
DdeI	CTNAG	4 cut(s)	398, 1203, 1821, 1841
DpnI	GATC	7 cut(s)	930, 1029, 1110, 1530, 1635, 1971, 2168
DpnII	GATC	7 cut(s)	928, 1027, 1108, 1528, 1633, 1969, 2166
DraI	TTTAAA	2 cut(s)	1912, 2239
DraIII	CACNNNGTG	1 cut(s)	1173
DriI	GACNNNNNGTC	1 cut(s)	244
EaeI	YGGCCR	2 cut(s)	906, 2250
Eam1104I	CTCTTC	5 cut(s)	82, 90, 266, 1083, 1398
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EarI	CTCTTC	5 cut(s)	82, 90, 266, 1083, 1398
EciI	GGCGGA	3 cut(s)	57, 215, 245
Ecl136II	GAGCTC	1 cut(s)	656
Eco105I	TACGTA	1 cut(s)	1044
Eco130I	CCWWGG	2 cut(s)	909, 2133
Eco147I	AGGCCT	2 cut(s)	670, 2284
Eco24I	GRGCYC	1 cut(s)	658
Eco31I	GGTCTC	2 cut(s)	42, 1280
Eco32I	GATATC	1 cut(s)	1036
Eco47I	GGWCC	3 cut(s)	1785, 2027, 2301
Eco53kI	GAGCTC	1 cut(s)	656
Eco57I	CTGAAG	1 cut(s)	2133
EcoICRI	GAGCTC	1 cut(s)	656
EcoNI	CCTNNNNNAGG	2 cut(s)	188, 1793
EcoO109I	RGGNCCY	1 cut(s)	1785
EcoRI	GAATTC	2 cut(s)	491, 580
EcoRII	CCWGG	2 cut(s)	32, 189
EcoRV	GATATC	1 cut(s)	1036
EcoT14I	CCWWGG	2 cut(s)	909, 2133
EcoT22I	ATGCAT	1 cut(s)	2248
EcoT38I	GRGCYC	1 cut(s)	658
ErhI	CCWWGG	2 cut(s)	909, 2133
FalI	AAGNNNNNCTT	2 cut(s)	1985, 2017
FaqI	GGGAC	3 cut(s)	377, 1139, 1798
FbaI	TGATCA	4 cut(s)	928, 1108, 1528, 2166
FblI	GTMKAC	2 cut(s)	620, 1834
Fnu4HI	GCNGC	5 cut(s)	209, 229, 281, 1441, 1725
FokI	GGATG	3 cut(s)	165, 386, 488
FriOI	GRGCYC	1 cut(s)	658
Fsp4HI	GCNGC	5 cut(s)	209, 229, 281, 1441, 1725
FspBI	CTAG	4 cut(s)	566, 1224, 1389, 2286
GlaI	GCGC	3 cut(s)	252, 294, 1212
GluI	GCNGC	5 cut(s)	209, 229, 281, 1441, 1725
GsaI	CCCAGC	1 cut(s)	208
GsuI	CTGGAG	1 cut(s)	1959
HaeIII	GGCC	6 cut(s)	272, 670, 908, 1590, 2252, 2284
HapII	CCGG	1 cut(s)	1186
HgaI	GACGC	1 cut(s)	1625
HhaI	GCGC	3 cut(s)	253, 295, 1213
Hin6I	GCGC	3 cut(s)	251, 293, 1211
HinP1I	GCGC	3 cut(s)	251, 293, 1211
HindIII	AAGCTT	3 cut(s)	557, 2153, 2199
HinfI	GANTC	8 cut(s)	218, 242, 353, 460, 1267, 1433, 1836, 1873
HpaII	CCGG	1 cut(s)	1186
HphI	GGTGA	4 cut(s)	776, 964, 1091, 1663
Hpy166II	GTNNAC	8 cut(s)	621, 936, 1099, 1356, 1448, 1671, 1763, 1835
Hpy188III	TCNNGA	8 cut(s)	415, 926, 1031, 1106, 1389, 1554, 1949, 1976
Hpy8I	GTNNAC	8 cut(s)	621, 936, 1099, 1356, 1448, 1671, 1763, 1835
Hpy99I	CGWCG	2 cut(s)	134, 242
HpyAV	CCTTC	6 cut(s)	103, 118, 949, 1643, 1714, 2108
HpyCH4III	ACNGT	9 cut(s)	835, 1130, 1144, 1255, 1289, 1314, 1364, 1385, 2195
HpyCH4IV	ACGT	6 cut(s)	938, 947, 1005, 1043, 1148, 1691
HpyF10VI	GCNNNNNNNGC	6 cut(s)	24, 123, 328, 594, 982, 1173
HpyF3I	CTNAG	4 cut(s)	398, 1203, 1821, 1841
HpySE526I	ACGT	6 cut(s)	938, 947, 1005, 1043, 1148, 1691
HspAI	GCGC	3 cut(s)	251, 293, 1211
KflI	GGGWCCC	1 cut(s)	1785
Ksp22I	TGATCA	4 cut(s)	928, 1108, 1528, 2166
Kzo9I	GATC	7 cut(s)	928, 1027, 1108, 1528, 1633, 1969, 2166
LmnI	GCTCC	3 cut(s)	216, 258, 793
Lsp1109I	GCAGC	4 cut(s)	220, 292, 1452, 1736
LweI	GCATC	4 cut(s)	14, 1501, 1969, 2233
MaeI	CTAG	4 cut(s)	566, 1224, 1389, 2286
MaeII	ACGT	6 cut(s)	938, 947, 1005, 1043, 1148, 1691
MaeIII	GTNAC	4 cut(s)	829, 1144, 1564, 1774
MalI	GATC	7 cut(s)	930, 1029, 1110, 1530, 1635, 1971, 2168
MboI	GATC	7 cut(s)	928, 1027, 1108, 1528, 1633, 1969, 2166
MfeI	CAATTG	1 cut(s)	2031
MhlI	GDGCHC	3 cut(s)	324, 658, 2079
MlsI	TGGCCA	2 cut(s)	908, 2252
MluNI	TGGCCA	2 cut(s)	908, 2252
MlyI	GAGTC	6 cut(s)	212, 251, 362, 1442, 1830, 1867
MmeI	TCCRAC	1 cut(s)	1895
Mox20I	TGGCCA	2 cut(s)	908, 2252
Mph1103I	ATGCAT	1 cut(s)	2248
MscI	TGGCCA	2 cut(s)	908, 2252
Msp20I	TGGCCA	2 cut(s)	908, 2252
MspA1I	CMGCKG	1 cut(s)	1443
MspI	CCGG	1 cut(s)	1186
MspR9I	CCNGG	3 cut(s)	34, 191, 1187
MunI	CAATTG	1 cut(s)	2031
MvaI	CCWGG	2 cut(s)	34, 191
MvnI	CGCG	3 cut(s)	251, 293, 1213
MwoI	GCNNNNNNNGC	6 cut(s)	24, 123, 328, 594, 982, 1173
NciI	CCSGG	1 cut(s)	1187
NcoI	CCATGG	1 cut(s)	2133
NdeII	GATC	7 cut(s)	928, 1027, 1108, 1528, 1633, 1969, 2166
NlaIV	GGNNCC	4 cut(s)	395, 1786, 1787, 1869
NmuCI	GTSAC	4 cut(s)	829, 1144, 1564, 1774
NsiI	ATGCAT	1 cut(s)	2248
NspI	RCATGY	3 cut(s)	980, 989, 1883
PaeI	GCATGC	1 cut(s)	989
PceI	AGGCCT	2 cut(s)	670, 2284
PcsI	WCGNNNNNNNCGW	3 cut(s)	348, 944, 1688
PfeI	GAWTC	2 cut(s)	460, 1267
PflFI	GACNNNGTC	1 cut(s)	1772
PkrI	GCNGC	5 cut(s)	210, 230, 282, 1442, 1726
PleI	GAGTC	6 cut(s)	212, 250, 361, 1441, 1830, 1867
PpsI	GAGTC	6 cut(s)	212, 250, 361, 1441, 1830, 1867
Ppu21I	YACGTR	3 cut(s)	1044, 1149, 1692
PpuMI	RGGWCCY	1 cut(s)	1785
PsiI	TTATAA	1 cut(s)	1887
Psp124BI	GAGCTC	1 cut(s)	658
Psp5II	RGGWCCY	1 cut(s)	1785
Psp6I	CCWGG	2 cut(s)	32, 189
PspFI	CCCAGC	1 cut(s)	204
PspGI	CCWGG	2 cut(s)	32, 189
PspN4I	GGNNCC	4 cut(s)	395, 1786, 1787, 1869
PspPI	GGNCC	4 cut(s)	270, 1785, 2027, 2301
PspPPI	RGGWCCY	1 cut(s)	1785
PstI	CTGCAG	1 cut(s)	1545
PsyI	GACNNNGTC	1 cut(s)	1772
PvuII	CAGCTG	1 cut(s)	1443
RsaI	GTAC	2 cut(s)	935, 1252
RsaNI	GTAC	2 cut(s)	934, 1251
SacI	GAGCTC	1 cut(s)	658
SatI	GCNGC	5 cut(s)	209, 229, 281, 1441, 1725
Sau3AI	GATC	7 cut(s)	928, 1027, 1108, 1528, 1633, 1969, 2166
Sau96I	GGNCC	4 cut(s)	270, 1785, 2027, 2301
SchI	GAGTC	6 cut(s)	212, 251, 362, 1442, 1830, 1867
ScrFI	CCNGG	3 cut(s)	34, 191, 1187
SduI	GDGCHC	3 cut(s)	324, 658, 2079
SfaNI	GCATC	4 cut(s)	14, 1501, 1969, 2233
SfcI	CTRYAG	2 cut(s)	1541, 1699
SinI	GGWCC	3 cut(s)	1785, 2027, 2301
SnaBI	TACGTA	1 cut(s)	1044
SpeI	ACTAGT	1 cut(s)	565
SphI	GCATGC	1 cut(s)	989
SseBI	AGGCCT	2 cut(s)	670, 2284
SsiI	CCGC	6 cut(s)	68, 226, 229, 249, 256, 1094
SspI	AATATT	1 cut(s)	1522
SspMI	CTAG	4 cut(s)	566, 1224, 1389, 2286
SstI	GAGCTC	1 cut(s)	658
StuI	AGGCCT	2 cut(s)	670, 2284
StyD4I	CCNGG	3 cut(s)	32, 189, 1185
StyI	CCWWGG	2 cut(s)	909, 2133
TaaI	ACNGT	9 cut(s)	835, 1130, 1144, 1255, 1289, 1314, 1364, 1385, 2195
TaiI	ACGT	6 cut(s)	941, 950, 1008, 1046, 1151, 1694
TaqI	TCGA	9 cut(s)	88, 216, 264, 351, 356, 570, 1121, 1436, 1948
TatI	WGTACW	2 cut(s)	933, 1250
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	460, 1267
TscAI	CASTG	3 cut(s)	1269, 1569, 2200
TseFI	GTSAC	4 cut(s)	829, 1144, 1564, 1774
TseI	GCWGC	4 cut(s)	208, 280, 1440, 1724
Tsp45I	GTSAC	4 cut(s)	829, 1144, 1564, 1774
TspRI	CASTG	3 cut(s)	1269, 1569, 2200
Tth111I	GACNNNGTC	1 cut(s)	1772
VpaK11BI	GGWCC	3 cut(s)	1785, 2027, 2301
XagI	CCTNNNNNAGG	2 cut(s)	188, 1793
XapI	RAATTY	5 cut(s)	491, 580, 1558, 2087, 2234
XbaI	TCTAGA	1 cut(s)	1388
XceI	RCATGY	3 cut(s)	980, 989, 1883
XmiI	GTMKAC	2 cut(s)	620, 1834
XspI	CTAG	4 cut(s)	566, 1224, 1389, 2286
Zsp2I	ATGCAT	1 cut(s)	2248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.