Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0015205

Physical Location & Seq

Genomic Coordinates Reverse (-)

8740811 .. 8743096

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g14250.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2286 bp

ATGGCCTTCTCTTTCTGCACCCAATGTTCTTCCTGGTCTCTCGCACCCACCCTAACCCCAACACCTCCACCTCACAGACCCTCCACTTCTCTCTCCTTCCCACTCCACAAACGACTCGTCGTTCATTCCTCCCTCTCCTATTCCACCACCCACCCCCTCCCTCACGACTTCACTCCCCAGCAGCTCCTCGACTCCCTCCGCCGCCAAAACGACGAGTCGTCCGCCCTCCGCCTCTTCGACTGGGCCTCCAAGCAGCCCAGCTTCTCCCCCAGCTCCGCCGTCTACGAGGAGGTCCTCACCAAGCTCGGAAAGGTCGGGTCTTTCGAGTCGATGAGGGACGTATTGGATGAAATGAGTCACCATCAGTGTTTGAGTAAAGGTAGCTTCTTGATTTTGATTGAGAGCTACGCTGCGTTTGATTTGTATGATGAGATTTTGGGCGTTGTGGATGTGATGGAGAGTGAGTTCGGGTTGGAACCCGATACCCATTTCTTTAATTTCTTGCTTAATGTGTTGGTTGATGGGAATAAGCTTAAACTAGTCGAAACTGCGAATTCCAAGATGAATAGCAGGGGGATTAAGCCGGATGTTTCTACATTTAACATTTTGATTAAGGCTTTGTGTAGAGCTCATCAGATTAGGCCCGCACTTTTGTTGATGGAGGAGATGGGAAGCTATGGTTTGAAGCCGGATGAGAAGACATTTACTACTATAATGCAGGGTTATATCGAGGAAGGTGAGATGAAAGGCGCGTTGAGAATTAGGGAGCAGATGGTGGAGTATGGTTGTCATTGTAGTAATGTGACTGTTAATGTGTTAGTTAATGGGTTTTGCAAGGAGGGTAGGGTTGATGAAGCGTTTGGTTTCATTGAGAAGATGGCGAAGGAGGGGTTTTCTCCTGATCAGTACACGTTTAATACGTTGGTGAAGGGCTTGTGTAGGGTGGGGCATGTTAAGCATGCTTTGGAGATTATGGATGTGATGTTGCAGGAGGGGTTTGATCTGGATATCTATACGTATAATGCTTTGGTTTCGGGGTTGTGTAAGTTGGGTGAGATTGAAGAGGCGGTGGACATTCTTGATCAGATGGTTTCGAGGGACTGTTCCCCAAATACCGTCACATATAATACTCTGATTAGCACATTGTGCAAGGAGAACCGGGTGGAGGAGGCAACTAAGCTAGCGCGTGTTCTAACTAGCAAGGGAATTATACCTGATGTTTGTACTGTCAATTCACTGATTCAGGGTCTCTGCTTGAACAGTAATCATAAAGTTGCTATGGAGCTGTTTGAGGAGATGAAGATGAAAGGGTGTCAACCTGATGGGTTTACTTACAGTTTGCTGATCGATAGCTACTGTTCAAGAGGGAAGCTGGAAGAGGCTTTGAGCTTGCTGAAAGATATGGAGTCAAGTGGCTGTGCACGAAATGCTGTAATATACAATACTCTGATTGATGGGTTCTGCAAAAACAAGAGGATTGAAGATGCAGAGGAGATTTTTGATCAGATGGAACTCCAGGGCATTTCAAGAAATTCAGTGACATACAATACCCTTATTGATGGCCTCTGCCAGAATAGGAGGGTGGAGGAAGCTTCTCAACTGATGGACCAGATGATAATGGAAGGTTTGAAGCCTGACAAGTTCACCTACAATTCGCTGCTCACGTATTTCTGTAGGTCTGGGGATATTAAGAAGGCAGCAGATATTGTTCAAAACATGACTTCGAATGGGTGTGAACCAGACATTGTCACGTATGGGACCCTTATTCAGGGGTTATGTAAGGCGGGTAGGACTGAGGTTGCGAGTAGACTCCTAAGAAGTTTGCCGATGAAAGGGTTGGTTCCGACTCCACATGCTTATAACCCTGTAATACAAGCACTGTTTAAACGAAAGAGAACAACAGAAGCTATGAGGCTTGTTCGAGAAATGATGGAGAAGGGTGATCCTCCAGATGCAATAACATTTAGGATTGTCTTTCGTGGGCTTTGTAATGGTGGAGGACCAATTGGGGAAGCAGTTGACTTTGCGATTGAAATGATGGAGAAAGGGTACCTACCAGAATTTTCATCATTTTCTATGCTGGCCGAAGGACTATATGCTTTATCTATGGAGGATACCCTGATTAAGCTTGTAGATATGATCATGGAGAAAGCAAGAGTTTCAGACAGTGAAGCGTCCATGATTAGGGGTTTCCTCAAAATCCGTAAATTTAAAGATGCATTGGCCACTCTTGGTGGTATTTTGAATAGCCAAAGACCCAGAAAATCTTACTGGACCAGAAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016070 GO:0016787 GO:0016788 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

762

Amino Acids

85.3

Weight (kDa)

5.58

Isoelectric Point (pI)

36.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	158 - 308	9.9e-09	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	160 - 209	2e-09	PPR repeat family
PPR_1	PF12854	191 - 223	1.3e-08	PPR repeat
PPR_2	PF13041	195 - 242	8.2e-13	PPR repeat family
TPR_24	PF23276	226 - 323	5.5e-07	Fungal tetratrico peptide repeats
PPR_2	PF13041	234 - 279	3.5e-11	PPR repeat family
PPR_1	PF12854	262 - 293	5.6e-10	PPR repeat
PPR_2	PF13041	267 - 314	3.1e-16	PPR repeat family
PPR	PF01535	268 - 298	5.2e-07	PPR repeat
PPR_1	PF12854	297 - 328	1.5e-10	PPR repeat
PPR_2	PF13041	304 - 349	8.7e-13	PPR repeat family
PPR_long	PF17177	313 - 448	1.4e-07	Pentacotripeptide-repeat region of PRORP
TPR_24	PF23276	314 - 432	2.1e-10	Fungal tetratrico peptide repeats
PPR_3	PF13812	324 - 382	1.3e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	332 - 364	2.1e-10	PPR repeat
PPR_2	PF13041	336 - 384	2.3e-17	PPR repeat family
PPR	PF01535	338 - 368	2.4e-08	PPR repeat
PPR_long	PF17177	353 - 474	3.5e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	366 - 394	1e-11	PPR repeat
PPR_2	PF13041	370 - 418	1.2e-14	PPR repeat family
PPR_3	PF13812	398 - 452	6.4e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	401 - 434	6.5e-09	PPR repeat
PPR_2	PF13041	405 - 453	2.9e-16	PPR repeat family
PPR	PF01535	409 - 438	2.2e-06	PPR repeat
PPR_1	PF12854	436 - 469	2.6e-11	PPR repeat
PPR	PF01535	443 - 473	4.1e-09	PPR repeat
PPR_long	PF17177	453 - 601	1.1e-13	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	463 - 520	4.2e-09	Pentatricopeptide repeat domain
PPR_1	PF12854	472 - 504	4.6e-13	PPR repeat
PPR_2	PF13041	476 - 524	1.1e-18	PPR repeat family
PPR	PF01535	478 - 508	5.5e-09	PPR repeat
PPR_1	PF12854	507 - 538	4e-13	PPR repeat
PPR_2	PF13041	510 - 554	5.8e-16	PPR repeat family
PPR	PF01535	513 - 543	1.1e-08	PPR repeat
PPR_3	PF13812	534 - 590	1.8e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	542 - 573	5.9e-08	PPR repeat
PPR_2	PF13041	545 - 594	7.3e-17	PPR repeat family
PPR_1	PF12854	576 - 606	8.4e-12	PPR repeat
PPR_2	PF13041	580 - 621	2.6e-07	PPR repeat family
PPR_2	PF13041	618 - 664	1.7e-12	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0015205)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53700
fragaria_vesca	FvH4_6g14250
malus_domestica	MD04G1122700.v1.1 MD12G1138900.v1.1
prunus_persica	Prupe.6G250800_v2.0.a1
pyrus_communis	pycom12g13320
rosa_chinensis	RchiOBHm_Chr3g0467211
rosa_laevigata	RLG00000024519
rosa_multiflora	Rmu_sc0000962.1_g000073
rosa_roxburghii	Rroxscaffold_6G00413820
rosa_rugosa	Rorug03G0085700
rosa_samantha	Rh3AG134200 Rh3BG155500 Rh3CG155100 Rh3DG156300
rosa_wichuraiana	Rw3G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1860
Acc65I	GGTACC	1 cut(s)	2049
AccB1I	GGYRCC	1 cut(s)	2049
AccI	GTMKAC	2 cut(s)	282, 1807
AccII	CGCG	2 cut(s)	752, 1186
AciI	CCGC	8 cut(s)	199, 202, 222, 229, 276, 645, 1067, 1784
AclWI	GGATC	1 cut(s)	1937
AcoI	YGGCCR	2 cut(s)	2082, 2223
AcsI	RAATTY	4 cut(s)	553, 1531, 2060, 2207
AdeI	CACNNNGTG	1 cut(s)	1146
AfaI	GTAC	3 cut(s)	908, 1225, 2051
AfiI	CCNNNNNNNGG	4 cut(s)	1165, 1768, 1832, 2184
AflIII	ACRYGT	1 cut(s)	909
AhdI	GACNNNNNGTC	1 cut(s)	217
AhlI	ACTAGT	1 cut(s)	538
AjnI	CCWGG	2 cut(s)	32, 1515
AloI	GAACNNNNNNTCC	2 cut(s)	449, 481
Alw21I	GWGCWC	2 cut(s)	631, 1423
Alw26I	GTCTC	2 cut(s)	42, 1253
Alw44I	GTGCAC	1 cut(s)	1419
AlwI	GGATC	1 cut(s)	1937
AoxI	GGCC	6 cut(s)	3, 243, 641, 1561, 2082, 2223
ApaLI	GTGCAC	1 cut(s)	1419
ApeKI	GCWGC	5 cut(s)	181, 253, 410, 1657, 1697
ApoI	RAATTY	4 cut(s)	553, 1531, 2060, 2207
ArsI	GACNNNNNNTTYG	2 cut(s)	102, 134
Asp718I	GGTACC	1 cut(s)	2049
AspLEI	GCGC	2 cut(s)	752, 1186
AspS9I	GGNCC	7 cut(s)	243, 292, 642, 1606, 1758, 2000, 2274
AsuC2I	CCSGG	1 cut(s)	1160
AsuHPI	GGTGA	7 cut(s)	289, 350, 749, 937, 1064, 1636, 1952
AsuII	TTCGAA	1 cut(s)	1724
AsuNHI	GCTAGC	1 cut(s)	1180
AvaII	GGWCC	5 cut(s)	292, 1606, 1758, 2000, 2274
BaeGI	GKGCMC	1 cut(s)	1423
BalI	TGGCCA	1 cut(s)	2225
BanI	GGYRCC	1 cut(s)	2049
BanII	GRGCYC	1 cut(s)	631
BbsI	GAAGAC	1 cut(s)	704
Bbv12I	GWGCWC	2 cut(s)	631, 1423
BbvI	GCAGC	5 cut(s)	193, 265, 397, 1644, 1709
BceAI	ACGGC	1 cut(s)	263
BciT130I	CCWGG	2 cut(s)	34, 1517
BciVI	GTATCC	1 cut(s)	2107
BclI	TGATCA	4 cut(s)	901, 1081, 1501, 2139
BcnI	CCSGG	1 cut(s)	1160
BcoDI	GTCTC	2 cut(s)	42, 1253
BcuI	ACTAGT	1 cut(s)	538
BfaI	CTAG	3 cut(s)	539, 1181, 1197
BfmI	CTRYAG	1 cut(s)	1672
BfuI	GTATCC	1 cut(s)	2107
BisI	GCNGC	6 cut(s)	182, 202, 254, 411, 1658, 1698
BlsI	GCNGC	6 cut(s)	183, 203, 255, 412, 1659, 1699
Bme1390I	CCNGG	3 cut(s)	34, 1160, 1517
Bme18I	GGWCC	5 cut(s)	292, 1606, 1758, 2000, 2274
BmeRI	GACNNNNNGTC	1 cut(s)	217
BmgT120I	GGNCC	7 cut(s)	243, 292, 642, 1606, 1758, 2000, 2274
BmiI	GGNNCC	5 cut(s)	477, 1759, 1760, 1842, 2051
BmrFI	CCNGG	3 cut(s)	34, 1160, 1517
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	3 cut(s)	1474, 1942, 2206
BmtI	GCTAGC	1 cut(s)	1184
BmuI	ACTGGG	1 cut(s)	250
BpiI	GAAGAC	1 cut(s)	704
BpmI	CTGGAG	2 cut(s)	1499, 1932
Bpu14I	TTCGAA	1 cut(s)	1724
BpuMI	CCSGG	1 cut(s)	1160
Bsa29I	ATCGAT	1 cut(s)	1347
BsaAI	YACGTR	3 cut(s)	1017, 1665, 1752
BsaI	GGTCTC	2 cut(s)	42, 1253
BsaJI	CCNNGG	1 cut(s)	1516
BsaXI	ACNNNNNCTCC	8 cut(s)	65, 95, 230, 260, 449, 479, 2033, 2063
Bsc4I	CCNNNNNNNGG	4 cut(s)	1165, 1768, 1832, 2184
Bse1I	ACTGG	2 cut(s)	245, 2276
BseBI	CCWGG	2 cut(s)	34, 1517
BseCI	ATCGAT	1 cut(s)	1347
BseDI	CCNNGG	1 cut(s)	1516
BseGI	GGATG	5 cut(s)	352, 454, 592, 697, 982
BseLI	CCNNNNNNNGG	4 cut(s)	1165, 1768, 1832, 2184
BseMII	CTCAG	1 cut(s)	1785
BseNI	ACTGG	2 cut(s)	245, 2276
BseRI	GAGGAG	6 cut(s)	176, 302, 677, 1181, 1307, 1505
BseSI	GKGCMC	1 cut(s)	1423
BseXI	GCAGC	5 cut(s)	193, 265, 397, 1644, 1709
BseYI	CCCAGC	3 cut(s)	177, 257, 269
Bsh1236I	CGCG	2 cut(s)	752, 1186
BshFI	GGCC	6 cut(s)	5, 245, 643, 1563, 2084, 2225
BshNI	GGYRCC	1 cut(s)	2049
BshVI	ATCGAT	1 cut(s)	1347
BsiHKAI	GWGCWC	2 cut(s)	631, 1423
BsiSI	CCGG	3 cut(s)	584, 689, 1159
BslFI	GGGAC	3 cut(s)	350, 1112, 1771
BslI	CCNNNNNNNGG	4 cut(s)	1165, 1768, 1832, 2184
BsmAI	GTCTC	2 cut(s)	42, 1253
BsmFI	GGGAC	3 cut(s)	350, 1112, 1771
BsnI	GGCC	6 cut(s)	5, 245, 643, 1563, 2084, 2225
Bso31I	GGTCTC	2 cut(s)	42, 1253
Bsp119I	TTCGAA	1 cut(s)	1724
Bsp1286I	GDGCHC	2 cut(s)	631, 1423
Bsp143I	GATC	7 cut(s)	901, 1000, 1081, 1344, 1501, 1942, 2139
BspACI	CCGC	8 cut(s)	199, 202, 222, 229, 276, 645, 1067, 1784
BspANI	GGCC	6 cut(s)	5, 245, 643, 1563, 2084, 2225
BspCNI	CTCAG	1 cut(s)	1786
BspDI	ATCGAT	1 cut(s)	1347
BspFNI	CGCG	2 cut(s)	752, 1186
BspLI	GGNNCC	5 cut(s)	477, 1759, 1760, 1842, 2051
BspOI	GCTAGC	1 cut(s)	1184
BspPI	GGATC	1 cut(s)	1937
BspT104I	TTCGAA	1 cut(s)	1724
BspT107I	GGYRCC	1 cut(s)	2049
BspTNI	GGTCTC	2 cut(s)	42, 1253
BsrI	ACTGG	2 cut(s)	245, 2276
BssECI	CCNNGG	1 cut(s)	1516
BssMI	GATC	7 cut(s)	901, 1000, 1081, 1344, 1501, 1942, 2139
Bst2UI	CCWGG	2 cut(s)	34, 1517
Bst4CI	ACNGT	9 cut(s)	808, 1103, 1117, 1228, 1262, 1337, 1358, 1881, 2168
Bst6I	CTCTTC	3 cut(s)	239, 1056, 1371
BstAPI	GCANNNNNTGC	2 cut(s)	1146, 1427
BstBAI	YACGTR	3 cut(s)	1017, 1665, 1752
BstBI	TTCGAA	1 cut(s)	1724
BstC8I	GCNNGC	5 cut(s)	645, 960, 1182, 1391, 2082
BstDEI	CTNAG	3 cut(s)	1176, 1794, 1814
BstENI	CCTNNNNNAGG	1 cut(s)	1766
BstF5I	GGATG	5 cut(s)	352, 454, 592, 697, 982
BstFNI	CGCG	2 cut(s)	752, 1186
BstHHI	GCGC	2 cut(s)	752, 1186
BstKTI	GATC	7 cut(s)	904, 1003, 1084, 1347, 1504, 1945, 2142
BstMAI	GTCTC	2 cut(s)	42, 1253
BstMBI	GATC	7 cut(s)	901, 1000, 1081, 1344, 1501, 1942, 2139
BstMWI	GCNNNNNNNGC	3 cut(s)	955, 1146, 1427
BstNI	CCWGG	2 cut(s)	34, 1517
BstNSI	RCATGY	3 cut(s)	953, 962, 1856
BstSCI	CCNGG	3 cut(s)	32, 1158, 1515
BstSFI	CTRYAG	1 cut(s)	1672
BstSLI	GKGCMC	1 cut(s)	1423
BstSNI	TACGTA	1 cut(s)	1017
BstUI	CGCG	2 cut(s)	752, 1186
BstV1I	GCAGC	5 cut(s)	193, 265, 397, 1644, 1709
BstV2I	GAAGAC	1 cut(s)	704
Bsu15I	ATCGAT	1 cut(s)	1347
BsuI	GTATCC	1 cut(s)	2107
BsuRI	GGCC	6 cut(s)	5, 245, 643, 1563, 2084, 2225
BsuTUI	ATCGAT	1 cut(s)	1347
BtsCI	GGATG	5 cut(s)	352, 454, 592, 697, 982
BtsIMutI	CAGTG	5 cut(s)	371, 1235, 1542, 1877, 2173
Cac8I	GCNNGC	5 cut(s)	645, 960, 1182, 1391, 2082
CfoI	GCGC	2 cut(s)	752, 1186
Cfr13I	GGNCC	7 cut(s)	243, 292, 642, 1606, 1758, 2000, 2274
ClaI	ATCGAT	1 cut(s)	1347
CseI	GACGC	1 cut(s)	2163
Csp6I	GTAC	3 cut(s)	907, 1224, 2050
CviAII	CATG	6 cut(s)	950, 959, 1717, 1853, 2143, 2179
CviQI	GTAC	3 cut(s)	907, 1224, 2050
DdeI	CTNAG	3 cut(s)	1176, 1794, 1814
DpnI	GATC	7 cut(s)	903, 1002, 1083, 1346, 1503, 1944, 2141
DpnII	GATC	7 cut(s)	901, 1000, 1081, 1344, 1501, 1942, 2139
DraI	TTTAAA	2 cut(s)	1885, 2212
DraIII	CACNNNGTG	1 cut(s)	1146
DriI	GACNNNNNGTC	1 cut(s)	217
EaeI	YGGCCR	2 cut(s)	2082, 2223
Eam1104I	CTCTTC	3 cut(s)	239, 1056, 1371
Eam1105I	GACNNNNNGTC	1 cut(s)	217
EarI	CTCTTC	3 cut(s)	239, 1056, 1371
EciI	GGCGGA	4 cut(s)	188, 211, 218, 265
Ecl136II	GAGCTC	1 cut(s)	629
Eco105I	TACGTA	1 cut(s)	1017
Eco24I	GRGCYC	1 cut(s)	631
Eco31I	GGTCTC	2 cut(s)	42, 1253
Eco32I	GATATC	1 cut(s)	1009
Eco47I	GGWCC	5 cut(s)	292, 1606, 1758, 2000, 2274
Eco53kI	GAGCTC	1 cut(s)	629
EcoICRI	GAGCTC	1 cut(s)	629
EcoNI	CCTNNNNNAGG	1 cut(s)	1766
EcoO109I	RGGNCCY	2 cut(s)	292, 1758
EcoRI	GAATTC	1 cut(s)	553
EcoRII	CCWGG	2 cut(s)	32, 1515
EcoRV	GATATC	1 cut(s)	1009
EcoT22I	ATGCAT	1 cut(s)	2221
EcoT38I	GRGCYC	1 cut(s)	631
FaeI	CATG	6 cut(s)	953, 962, 1720, 1856, 2146, 2182
FaqI	GGGAC	3 cut(s)	350, 1112, 1771
FatI	CATG	6 cut(s)	949, 958, 1716, 1852, 2142, 2178
FauI	CCCGC	2 cut(s)	652, 1777
FbaI	TGATCA	4 cut(s)	901, 1081, 1501, 2139
FblI	GTMKAC	2 cut(s)	282, 1807
Fnu4HI	GCNGC	6 cut(s)	182, 202, 254, 411, 1658, 1698
FokI	GGATG	5 cut(s)	359, 461, 599, 704, 989
FriOI	GRGCYC	1 cut(s)	631
Fsp4HI	GCNGC	6 cut(s)	182, 202, 254, 411, 1658, 1698
FspBI	CTAG	3 cut(s)	539, 1181, 1197
GlaI	GCGC	2 cut(s)	751, 1185
GluI	GCNGC	6 cut(s)	182, 202, 254, 411, 1658, 1698
GsaI	CCCAGC	3 cut(s)	181, 261, 273
GsuI	CTGGAG	2 cut(s)	1499, 1932
HaeIII	GGCC	6 cut(s)	5, 245, 643, 1563, 2084, 2225
HapII	CCGG	3 cut(s)	584, 689, 1159
HgaI	GACGC	1 cut(s)	2163
HhaI	GCGC	2 cut(s)	752, 1186
Hin1II	CATG	6 cut(s)	953, 962, 1720, 1856, 2146, 2182
Hin6I	GCGC	2 cut(s)	750, 1184
HinP1I	GCGC	2 cut(s)	750, 1184
HincII	GTYRAC	2 cut(s)	1316, 2020
HindII	GTYRAC	2 cut(s)	1316, 2020
HindIII	AAGCTT	3 cut(s)	530, 1590, 2126
HinfI	GANTC	9 cut(s)	114, 191, 215, 326, 355, 1240, 1406, 1809, 1846
HpaII	CCGG	3 cut(s)	584, 689, 1159
HphI	GGTGA	7 cut(s)	289, 350, 749, 937, 1064, 1636, 1952
Hpy188I	TCNGA	8 cut(s)	308, 636, 1086, 1134, 1449, 1506, 1845, 2164
Hpy188III	TCNNGA	9 cut(s)	164, 388, 899, 1004, 1079, 1362, 1527, 1922, 1949
Hpy99I	CGWCG	2 cut(s)	122, 215
HpyAV	CCTTC	9 cut(s)	16, 106, 728, 877, 922, 1616, 1687, 1930, 2081
HpyCH4III	ACNGT	9 cut(s)	808, 1103, 1117, 1228, 1262, 1337, 1358, 1881, 2168
HpyCH4IV	ACGT	6 cut(s)	339, 911, 920, 1016, 1664, 1751
HpyF10VI	GCNNNNNNNGC	3 cut(s)	955, 1146, 1427
HpyF3I	CTNAG	3 cut(s)	1176, 1794, 1814
HpySE526I	ACGT	6 cut(s)	339, 911, 920, 1016, 1664, 1751
Hsp92II	CATG	6 cut(s)	953, 962, 1720, 1856, 2146, 2182
HspAI	GCGC	2 cut(s)	750, 1184
KflI	GGGWCCC	1 cut(s)	1758
KpnI	GGTACC	1 cut(s)	2053
Ksp22I	TGATCA	4 cut(s)	901, 1081, 1501, 2139
Kzo9I	GATC	7 cut(s)	901, 1000, 1081, 1344, 1501, 1942, 2139
LmnI	GCTCC	4 cut(s)	189, 278, 766, 1282
Lsp1109I	GCAGC	5 cut(s)	193, 265, 397, 1644, 1709
LweI	GCATC	3 cut(s)	1474, 1942, 2206
MaeI	CTAG	3 cut(s)	539, 1181, 1197
MaeII	ACGT	6 cut(s)	339, 911, 920, 1016, 1664, 1751
MaeIII	GTNAC	5 cut(s)	356, 802, 1117, 1537, 1747
MalI	GATC	7 cut(s)	903, 1002, 1083, 1346, 1503, 1944, 2141
MboI	GATC	7 cut(s)	901, 1000, 1081, 1344, 1501, 1942, 2139
MboII	GAAGA	8 cut(s)	21, 226, 709, 886, 1073, 1312, 1388, 1493
MfeI	CAATTG	1 cut(s)	2004
MhlI	GDGCHC	2 cut(s)	631, 1423
MlsI	TGGCCA	1 cut(s)	2225
MluNI	TGGCCA	1 cut(s)	2225
MlyI	GAGTC	8 cut(s)	108, 185, 224, 335, 364, 1415, 1803, 1840
MmeI	TCCRAC	2 cut(s)	453, 1868
Mox20I	TGGCCA	1 cut(s)	2225
Mph1103I	ATGCAT	1 cut(s)	2221
MscI	TGGCCA	1 cut(s)	2225
Msp20I	TGGCCA	1 cut(s)	2225
MspI	CCGG	3 cut(s)	584, 689, 1159
MspR9I	CCNGG	3 cut(s)	34, 1160, 1517
MssI	GTTTAAAC	1 cut(s)	1885
MunI	CAATTG	1 cut(s)	2004
MvaI	CCWGG	2 cut(s)	34, 1517
MvnI	CGCG	2 cut(s)	752, 1186
MwoI	GCNNNNNNNGC	3 cut(s)	955, 1146, 1427
NciI	CCSGG	1 cut(s)	1160
NdeII	GATC	7 cut(s)	901, 1000, 1081, 1344, 1501, 1942, 2139
NheI	GCTAGC	1 cut(s)	1180
NlaIII	CATG	6 cut(s)	953, 962, 1720, 1856, 2146, 2182
NlaIV	GGNNCC	5 cut(s)	477, 1759, 1760, 1842, 2051
NmuCI	GTSAC	5 cut(s)	356, 802, 1117, 1537, 1747
NsiI	ATGCAT	1 cut(s)	2221
NspI	RCATGY	3 cut(s)	953, 962, 1856
NspV	TTCGAA	1 cut(s)	1724
PaeI	GCATGC	1 cut(s)	962
PcsI	WCGNNNNNNNCGW	3 cut(s)	321, 917, 1661
PfeI	GAWTC	1 cut(s)	1240
PflFI	GACNNNGTC	1 cut(s)	1745
PkrI	GCNGC	6 cut(s)	183, 203, 255, 412, 1659, 1699
PleI	GAGTC	8 cut(s)	108, 185, 223, 334, 363, 1414, 1803, 1840
PmeI	GTTTAAAC	1 cut(s)	1885
PpsI	GAGTC	8 cut(s)	108, 185, 223, 334, 363, 1414, 1803, 1840
Ppu21I	YACGTR	3 cut(s)	1017, 1665, 1752
PpuMI	RGGWCCY	2 cut(s)	292, 1758
PsiI	TTATAA	1 cut(s)	1860
Psp124BI	GAGCTC	1 cut(s)	631
Psp5II	RGGWCCY	2 cut(s)	292, 1758
Psp6I	CCWGG	2 cut(s)	32, 1515
PspFI	CCCAGC	3 cut(s)	177, 257, 269
PspGI	CCWGG	2 cut(s)	32, 1515
PspN4I	GGNNCC	5 cut(s)	477, 1759, 1760, 1842, 2051
PspPI	GGNCC	7 cut(s)	243, 292, 642, 1606, 1758, 2000, 2274
PspPPI	RGGWCCY	2 cut(s)	292, 1758
PsyI	GACNNNGTC	1 cut(s)	1745
RsaI	GTAC	3 cut(s)	908, 1225, 2051
RsaNI	GTAC	3 cut(s)	907, 1224, 2050
SacI	GAGCTC	1 cut(s)	631
SatI	GCNGC	6 cut(s)	182, 202, 254, 411, 1658, 1698
Sau3AI	GATC	7 cut(s)	901, 1000, 1081, 1344, 1501, 1942, 2139
Sau96I	GGNCC	7 cut(s)	243, 292, 642, 1606, 1758, 2000, 2274
SchI	GAGTC	8 cut(s)	108, 185, 224, 335, 364, 1415, 1803, 1840
ScrFI	CCNGG	3 cut(s)	34, 1160, 1517
SduI	GDGCHC	2 cut(s)	631, 1423
SfaNI	GCATC	3 cut(s)	1474, 1942, 2206
SfcI	CTRYAG	1 cut(s)	1672
SfuI	TTCGAA	1 cut(s)	1724
SinI	GGWCC	5 cut(s)	292, 1606, 1758, 2000, 2274
SnaBI	TACGTA	1 cut(s)	1017
SpeI	ACTAGT	1 cut(s)	538
SphI	GCATGC	1 cut(s)	962
SsiI	CCGC	8 cut(s)	199, 202, 222, 229, 276, 645, 1067, 1784
SspMI	CTAG	3 cut(s)	539, 1181, 1197
SstI	GAGCTC	1 cut(s)	631
StyD4I	CCNGG	3 cut(s)	32, 1158, 1515
TaaI	ACNGT	9 cut(s)	808, 1103, 1117, 1228, 1262, 1337, 1358, 1881, 2168
TaiI	ACGT	6 cut(s)	342, 914, 923, 1019, 1667, 1754
TatI	WGTACW	2 cut(s)	906, 1223
TauI	GCSGC	1 cut(s)	204
TfiI	GAWTC	1 cut(s)	1240
TscAI	CASTG	5 cut(s)	371, 1242, 1542, 1884, 2173
TseFI	GTSAC	5 cut(s)	356, 802, 1117, 1537, 1747
TseI	GCWGC	5 cut(s)	181, 253, 410, 1657, 1697
Tsp45I	GTSAC	5 cut(s)	356, 802, 1117, 1537, 1747
TspGWI	ACGGA	1 cut(s)	2192
TspRI	CASTG	5 cut(s)	371, 1242, 1542, 1884, 2173
Tth111I	GACNNNGTC	1 cut(s)	1745
VneI	GTGCAC	1 cut(s)	1419
VpaK11BI	GGWCC	5 cut(s)	292, 1606, 1758, 2000, 2274
XagI	CCTNNNNNAGG	1 cut(s)	1766
XapI	RAATTY	4 cut(s)	553, 1531, 2060, 2207
XceI	RCATGY	3 cut(s)	953, 962, 1856
XmiI	GTMKAC	2 cut(s)	282, 1807
XspI	CTAG	3 cut(s)	539, 1181, 1197
Zsp2I	ATGCAT	1 cut(s)	2221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.