Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012100

Physical Location & Seq

Genomic Coordinates Forward (+)

20000821 .. 20005280

Gene Structure 4460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1908 bp

ATGGCGGTAGGCGATCAGACGGAGCAGAATTACTTGCCGAAGAAGAAGAAATCCGAAACGGAAGATGATAAGAGGAGGAAGAAAATTGTTCCCGGGAGCTTGTTGAAAGCTGTGGTGCGACCTGGAGGAGGTGATTCGAGCCCCGTTGATGGTGATCAGGTTATTTATCACTGCACTGTACGGACACTGGATGGTGTAGTTGTGGAATCTACGAGGTCAGAATCTGGAGGGAGAGGTGTACCGATCAGAGATGTCTTGGGAAACAGCAAAATGATTCTTGGATTGCTCGAAGGAATTCCCACGATGCACAAGGGTGAAATTGCAATGTTCAAGATGAAACCTGAAATGCACTATGCAGAGATTGATTGTCCAGTCTCAGCTCCAGAAAATTTTCCAAAAGATGATGAGCTTCATTTTGAGATTGAGTTGTTGGATTTTTCTAAAGCCAAGATTGCAAGTGATGATCTGGGGGTCATCAAGAAGATTCTAAATGAAGGTGAGGGCTGGGAATCTCCCAGAGAACCCTATGAAGTGAAAGCCAGAATATCTGCTAAATCCGGTGATGGACACGTGATCTTCTCTCACACAGAAGAACCTTATTTCTTCACATTTGGAAAATCTGAGGTGCCTAAAGGTCTTGAAATCGGAATTGGAACCATGGCTCGGAAGGAGAAGGCAGTGATATATGTTCGCAAGCAGTACTTGACTGAATCTCCTTTGTTGCATATAGATCAAGACCTTGAGGAAGTTCATTTTGAGGTTGAACTGGTACATTTCATTCAGGTGCGGGACATGCTTGGAGATGGACGTCTCATAAAACGTCGAATTCGAGATGGAAGAGGCGAGTTTCCAATGGATTGTCCTCTCCAAGATAGTCGTTTAAGCGTTCACTACAAGGGCATGCTTCTCAATGAAGAGAAGACTGTCTTCTATGATAGCAAGATTGACAATAATGATCAACCGTTGGAGTTCAGTTCAGGAGAAGGACTGGTCCCTGAAGGGTTTGAGATGTGTACTCGTTTGATGCTACCTGGGGAGATTGCTCTTGTTACATGCCCCCCTGATTATGCATATGACAAATTTCCGAGACCACCTGGCGTGTCTGAAGGTGCACATGTTCAGTGGGAGATTGAACTCCTTGGTTTCGAAACGCCAAGAGACTGGACTGGCTTGAACTTCCAGAGCATCATGGACGAGGCAGATAAAATCAGAAGCACGGGTAATAGGCTTTTCAAAGAAGGAAAATTTGAGCTCGCAAAAGCAAAGTACGAAAAGGTGCTCCGGGAATTTAATCATGTTAACCCACAAGATGAAGATGAAGGAAAAATATTTGGTGACACAAGGAATATGTTACATCTGAATGTTGCGGCTTGCTTGCTTAAAATGGGAGAGTGGAGGAAGTCTATAGAGACATGCAATAAGGTTCTAGAAGCAAAGCCTGGTCATGTGAAAGGTCTATACCGCCGCGGAATGGCTTACATTGCAGGTGGAGAGTATGATGACGCTAGAAATGACTTCAATATGATGATCAAAGTGGATAAATCATCAGAAGCTGATGCGACCGCTGCTCTATTGAAACTGAAGCAGAAGGAACAGGAAGCGGAGAGCAAGGCTAGAAAACAGTTCAAAGGATTATTCGACAAGAGACCGGGGGAGATAACCGAAGTTGGTTCAGAAATAAGAGAGGAGTCTAAAACTATAGAAGAAGTAGATGAGACAAAGGATAATGATGATGATGAAACACTGGAAGAAGAAGGAGCTACGACAGTGAGCACGGAAAGGAAGAGGAAATGGTCGGAGAAAGCCTGGCCGTTTCTGAAGAACGTGATGCTCCAAATCGGAATCCAGCTTGGTGTTGTTCTGATAGGGATTTTGATTTTCCAGTTTGTGAGCGCCAAATTTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000038 GO:0000413 GO:0000902 GO:0003006 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006457 GO:0006464 GO:0006629 GO:0006631 GO:0006633 GO:0006807 GO:0007163 GO:0007275 GO:0007389 GO:0008144 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009880 GO:0009987 GO:0010033 GO:0010154 GO:0012505 GO:0016043 GO:0016049 GO:0016053 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019752 GO:0022414 GO:0022622 GO:0030010 GO:0030154 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042761 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0061077 GO:0061458 GO:0071704 GO:0071840 GO:0072330 GO:0090696 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_6 TPR_8

Protein Analysis

635

Amino Acids

71.8

Weight (kDa)

5.32

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	45 - 144	2.3e-16	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	170 - 256	9.5e-06	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	290 - 380	1.4e-15	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54010 AT3G54010
fragaria_vesca	FvH4_6g12640 FvH4_6g12640 FvH4_6g12640
malus_domestica	MD04G1140300.v1.1 MD12G1155600.v1.1
prunus_persica	Prupe.6G265400_v2.0.a1
pyrus_communis	pycom04g12790 pycom12g14770
rosa_chinensis	RchiOBHm_Chr3g0464491
rosa_laevigata	RLG00000024692
rosa_multiflora	Rmu_sc0003074.1_g000006
rosa_roxburghii	Rroxscaffold_6G00415620
rosa_rugosa	Rorug03G0072600
rosa_samantha	Rh3BG134800 Rh3CG137300 Rh3DG136100
rosa_wichuraiana	Rw3G011020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1475
AatII	GACGTC	1 cut(s)	811
Acc36I	ACCTGC	1 cut(s)	1475
AccB1I	GGYRCC	1 cut(s)	625
AccII	CGCG	1 cut(s)	1467
AciI	CCGC	8 cut(s)	5, 787, 1367, 1462, 1465, 1467, 1563, 1601
AcoI	YGGCCR	1 cut(s)	1808
AcsI	RAATTY	7 cut(s)	294, 388, 825, 1079, 1244, 1286, 1898
AcuI	CTGAAG	4 cut(s)	1017, 1125, 1601, 1838
AcvI	CACGTG	1 cut(s)	571
AcyI	GRCGYC	1 cut(s)	808
AfaI	GTAC	6 cut(s)	180, 240, 701, 771, 1015, 1268
AfiI	CCNNNNNNNGG	4 cut(s)	128, 149, 663, 1471
AflIII	ACRYGT	2 cut(s)	568, 1114
AjnI	CCWGG	5 cut(s)	121, 1030, 1093, 1438, 1805
AjuI	GAANNNNNNNTTGG	2 cut(s)	633, 665
AleI	CACNNNNGTG	1 cut(s)	312
AluBI	AGCT	8 cut(s)	99, 110, 380, 409, 1252, 1553, 1760, 1849
AluI	AGCT	8 cut(s)	99, 110, 380, 409, 1252, 1553, 1760, 1849
Alw21I	GWGCWC	4 cut(s)	1114, 1254, 1281, 1775
Alw26I	GTCTC	7 cut(s)	379, 815, 1081, 1152, 1403, 1639, 1709
Alw44I	GTGCAC	1 cut(s)	1110
AlwNI	CAGNNNCTG	2 cut(s)	224, 1553
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	1 cut(s)	1808
ApaLI	GTGCAC	1 cut(s)	1110
ApeKI	GCWGC	1 cut(s)	1565
ApoI	RAATTY	7 cut(s)	294, 388, 825, 1079, 1244, 1286, 1898
Asp700I	GAANNNNTTC	2 cut(s)	294, 390
AspLEI	GCGC	1 cut(s)	1895
AspS9I	GGNCC	1 cut(s)	991
AsuC2I	CCSGG	4 cut(s)	93, 94, 1283, 1650
AsuHPI	GGTGA	6 cut(s)	143, 164, 326, 509, 572, 1346
AsuII	TTCGAA	1 cut(s)	1146
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	991
BaeGI	GKGCMC	1 cut(s)	1114
BanI	GGYRCC	1 cut(s)	625
BanII	GRGCYC	2 cut(s)	143, 1254
BbrPI	CACGTG	1 cut(s)	571
BbsI	GAAGAC	2 cut(s)	919, 926
Bbv12I	GWGCWC	4 cut(s)	1114, 1254, 1281, 1775
BbvI	GCAGC	1 cut(s)	1552
BccI	CCATC	5 cut(s)	143, 185, 557, 797, 827
BceAI	ACGGC	1 cut(s)	1795
BciT130I	CCWGG	5 cut(s)	123, 1032, 1095, 1440, 1807
BclI	TGATCA	3 cut(s)	154, 955, 1527
BcnI	CCSGG	4 cut(s)	93, 94, 1283, 1650
BcoDI	GTCTC	7 cut(s)	379, 815, 1081, 1152, 1403, 1639, 1709
BfaI	CTAG	3 cut(s)	1427, 1506, 1614
BfmI	CTRYAG	2 cut(s)	1404, 1698
BfoI	RGCGCY	1 cut(s)	1896
BfuAI	ACCTGC	1 cut(s)	1475
BisI	GCNGC	3 cut(s)	1368, 1465, 1566
BlsI	GCNGC	3 cut(s)	1369, 1466, 1567
BmcAI	AGTACT	1 cut(s)	701
Bme1390I	CCNGG	9 cut(s)	93, 94, 123, 1032, 1095, 1283, 1440, 1650, 1807
Bme18I	GGWCC	1 cut(s)	991
BmeT110I	CYCGRG	1 cut(s)	92
BmgT120I	GGNCC	1 cut(s)	991
BmiI	GGNNCC	3 cut(s)	627, 655, 993
BmrFI	CCNGG	9 cut(s)	93, 94, 123, 1032, 1095, 1283, 1440, 1650, 1807
BmsI	GCATC	5 cut(s)	294, 1014, 1194, 1546, 1818
BpiI	GAAGAC	2 cut(s)	919, 926
BpmI	CTGGAG	3 cut(s)	144, 246, 366
Bpu14I	TTCGAA	1 cut(s)	1146
BpuEI	CTTGAG	1 cut(s)	761
BpuMI	CCSGG	4 cut(s)	93, 94, 1283, 1650
BsaAI	YACGTR	1 cut(s)	571
BsaBI	GATNNNNATC	1 cut(s)	153
BsaHI	GRCGYC	1 cut(s)	808
BsaI	GGTCTC	2 cut(s)	1081, 1639
BsaJI	CCNNGG	6 cut(s)	92, 657, 1031, 1138, 1465, 1649
BsaWI	WCCGGW	1 cut(s)	557
BsaXI	ACNNNNNCTCC	2 cut(s)	697, 727
Bsc4I	CCNNNNNNNGG	4 cut(s)	128, 149, 663, 1471
Bse1I	ACTGG	8 cut(s)	192, 371, 771, 993, 1166, 1171, 1749, 1882
Bse3DI	GCAATG	2 cut(s)	330, 1479
Bse8I	GATNNNNATC	1 cut(s)	153
BseBI	CCWGG	5 cut(s)	123, 1032, 1095, 1440, 1807
BseDI	CCNNGG	6 cut(s)	92, 657, 1031, 1138, 1465, 1649
BseGI	GGATG	1 cut(s)	196
BseJI	GATNNNNATC	1 cut(s)	153
BseLI	CCNNNNNNNGG	4 cut(s)	128, 149, 663, 1471
BseMI	GCAATG	2 cut(s)	330, 1479
BseMII	CTCAG	2 cut(s)	390, 612
BseNI	ACTGG	8 cut(s)	192, 371, 771, 993, 1166, 1171, 1749, 1882
BseRI	GAGGAG	3 cut(s)	88, 141, 1700
BseSI	GKGCMC	1 cut(s)	1114
BseXI	GCAGC	1 cut(s)	1552
BseYI	CCCAGC	1 cut(s)	504
BsgI	GTGCAG	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	1467
Bsh1285I	CGRYCG	1 cut(s)	1563
BshFI	GGCC	1 cut(s)	1810
BshNI	GGYRCC	1 cut(s)	625
BsiEI	CGRYCG	1 cut(s)	1563
BsiHKAI	GWGCWC	4 cut(s)	1114, 1254, 1281, 1775
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	4 cut(s)	93, 558, 1282, 1649
BslFI	GGGAC	2 cut(s)	803, 977
BslI	CCNNNNNNNGG	4 cut(s)	128, 149, 663, 1471
BsmAI	GTCTC	7 cut(s)	379, 815, 1081, 1152, 1403, 1639, 1709
BsmBI	CGTCTC	1 cut(s)	815
BsmFI	GGGAC	2 cut(s)	803, 977
BsnI	GGCC	1 cut(s)	1810
Bso31I	GGTCTC	2 cut(s)	1081, 1639
BsoBI	CYCGRG	1 cut(s)	92
Bsp119I	TTCGAA	1 cut(s)	1146
Bsp1286I	GDGCHC	5 cut(s)	143, 1114, 1254, 1281, 1775
Bsp143I	GATC	8 cut(s)	13, 154, 243, 463, 573, 730, 955, 1527
Bsp19I	CCATGG	1 cut(s)	657
BspACI	CCGC	8 cut(s)	5, 787, 1367, 1462, 1465, 1467, 1563, 1601
BspANI	GGCC	1 cut(s)	1810
BspCNI	CTCAG	2 cut(s)	389, 613
BspFNI	CGCG	1 cut(s)	1467
BspLI	GGNNCC	3 cut(s)	627, 655, 993
BspMI	ACCTGC	1 cut(s)	1475
BspT104I	TTCGAA	1 cut(s)	1146
BspT107I	GGYRCC	1 cut(s)	625
BspTNI	GGTCTC	2 cut(s)	1081, 1639
BsrDI	GCAATG	2 cut(s)	330, 1479
BsrI	ACTGG	8 cut(s)	192, 371, 771, 993, 1166, 1171, 1749, 1882
BssECI	CCNNGG	6 cut(s)	92, 657, 1031, 1138, 1465, 1649
BssMI	GATC	8 cut(s)	13, 154, 243, 463, 573, 730, 955, 1527
BssNI	GRCGYC	1 cut(s)	808
BssT1I	CCWWGG	2 cut(s)	657, 1138
Bst2UI	CCWGG	5 cut(s)	123, 1032, 1095, 1440, 1807
Bst4CI	ACNGT	5 cut(s)	178, 925, 963, 1623, 1768
Bst6I	CTCTTC	3 cut(s)	832, 909, 1778
BstACI	GRCGYC	1 cut(s)	808
BstBAI	YACGTR	1 cut(s)	571
BstBI	TTCGAA	1 cut(s)	1146
BstC8I	GCNNGC	5 cut(s)	695, 902, 1254, 1372, 1376
BstDEI	CTNAG	2 cut(s)	376, 621
BstDSI	CCRYGG	2 cut(s)	657, 1465
BstENI	CCTNNNNNAGG	1 cut(s)	126
BstF5I	GGATG	1 cut(s)	196
BstFNI	CGCG	1 cut(s)	1467
BstH2I	RGCGCY	1 cut(s)	1896
BstHHI	GCGC	1 cut(s)	1895
BstKTI	GATC	8 cut(s)	16, 157, 246, 466, 576, 733, 958, 1530
BstMAI	GTCTC	7 cut(s)	379, 815, 1081, 1152, 1403, 1639, 1709
BstMBI	GATC	8 cut(s)	13, 154, 243, 463, 573, 730, 955, 1527
BstMCI	CGRYCG	1 cut(s)	1563
BstMWI	GCNNNNNNNGC	4 cut(s)	452, 793, 1481, 1565
BstNI	CCWGG	5 cut(s)	123, 1032, 1095, 1440, 1807
BstNSI	RCATGY	5 cut(s)	796, 904, 1056, 1118, 1416
BstSCI	CCNGG	9 cut(s)	91, 92, 121, 1030, 1093, 1281, 1438, 1648, 1805
BstSFI	CTRYAG	2 cut(s)	1404, 1698
BstSLI	GKGCMC	1 cut(s)	1114
BstUI	CGCG	1 cut(s)	1467
BstV1I	GCAGC	1 cut(s)	1552
BstV2I	GAAGAC	2 cut(s)	919, 926
BstXI	CCANNNNNNTGG	1 cut(s)	1161
BsuRI	GGCC	1 cut(s)	1810
BtgI	CCRYGG	2 cut(s)	657, 1465
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	2 cut(s)	169, 684
BtsIMutI	CAGTG	7 cut(s)	169, 174, 185, 684, 1127, 1742, 1773
BveI	ACCTGC	1 cut(s)	1475
Cac8I	GCNNGC	5 cut(s)	695, 902, 1254, 1372, 1376
CaiI	CAGNNNCTG	2 cut(s)	224, 1553
CfoI	GCGC	1 cut(s)	1895
Cfr13I	GGNCC	1 cut(s)	991
Cfr42I	CCGCGG	1 cut(s)	1468
Cfr9I	CCCGGG	1 cut(s)	92
CseI	GACGC	1 cut(s)	1511
Csp6I	GTAC	6 cut(s)	179, 239, 700, 770, 1014, 1267
CviQI	GTAC	6 cut(s)	179, 239, 700, 770, 1014, 1267
DdeI	CTNAG	2 cut(s)	376, 621
DpnI	GATC	8 cut(s)	15, 156, 245, 465, 575, 732, 957, 1529
DpnII	GATC	8 cut(s)	13, 154, 243, 463, 573, 730, 955, 1527
EaeI	YGGCCR	1 cut(s)	1808
Eam1104I	CTCTTC	3 cut(s)	832, 909, 1778
EarI	CTCTTC	3 cut(s)	832, 909, 1778
Ecl136II	GAGCTC	1 cut(s)	1252
Eco130I	CCWWGG	2 cut(s)	657, 1138
Eco24I	GRGCYC	2 cut(s)	143, 1254
Eco31I	GGTCTC	2 cut(s)	1081, 1639
Eco47I	GGWCC	1 cut(s)	991
Eco53kI	GAGCTC	1 cut(s)	1252
Eco57I	CTGAAG	4 cut(s)	1017, 1125, 1601, 1838
Eco72I	CACGTG	1 cut(s)	571
Eco88I	CYCGRG	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	1252
EcoNI	CCTNNNNNAGG	1 cut(s)	126
EcoRI	GAATTC	2 cut(s)	294, 825
EcoRII	CCWGG	5 cut(s)	121, 1030, 1093, 1438, 1805
EcoT14I	CCWWGG	2 cut(s)	657, 1138
EcoT22I	ATGCAT	1 cut(s)	1072
EcoT38I	GRGCYC	2 cut(s)	143, 1254
ErhI	CCWWGG	2 cut(s)	657, 1138
Esp3I	CGTCTC	1 cut(s)	815
FalI	AAGNNNNNCTT	4 cut(s)	686, 718, 911, 943
FaqI	GGGAC	2 cut(s)	803, 977
FauI	CCCGC	1 cut(s)	780
FauNDI	CATATG	1 cut(s)	1072
FbaI	TGATCA	3 cut(s)	154, 955, 1527
Fnu4HI	GCNGC	3 cut(s)	1368, 1465, 1566
FokI	GGATG	1 cut(s)	203
FriOI	GRGCYC	2 cut(s)	143, 1254
Fsp4HI	GCNGC	3 cut(s)	1368, 1465, 1566
FspBI	CTAG	3 cut(s)	1427, 1506, 1614
GlaI	GCGC	1 cut(s)	1894
GluI	GCNGC	3 cut(s)	1368, 1465, 1566
GsaI	CCCAGC	1 cut(s)	508
GsuI	CTGGAG	3 cut(s)	144, 246, 366
HaeII	RGCGCY	1 cut(s)	1896
HaeIII	GGCC	1 cut(s)	1810
HapII	CCGG	4 cut(s)	93, 558, 1282, 1649
HgaI	GACGC	1 cut(s)	1511
HhaI	GCGC	1 cut(s)	1895
Hin1I	GRCGYC	1 cut(s)	808
Hin6I	GCGC	1 cut(s)	1893
HinP1I	GCGC	1 cut(s)	1893
HincII	GTYRAC	1 cut(s)	1300
HindII	GTYRAC	1 cut(s)	1300
HinfI	GANTC	9 cut(s)	134, 206, 221, 274, 484, 509, 710, 1688, 1842
HpaI	GTTAAC	1 cut(s)	1300
HpaII	CCGG	4 cut(s)	93, 558, 1282, 1649
HphI	GGTGA	6 cut(s)	143, 164, 326, 509, 572, 1346
Hpy166II	GTNNAC	5 cut(s)	239, 889, 1014, 1112, 1300
Hpy8I	GTNNAC	5 cut(s)	239, 889, 1014, 1112, 1300
Hpy99I	CGWCG	1 cut(s)	825
HpyCH4III	ACNGT	5 cut(s)	178, 925, 963, 1623, 1768
HpyCH4IV	ACGT	4 cut(s)	570, 808, 820, 1824
HpyF10VI	GCNNNNNNNGC	4 cut(s)	452, 793, 1481, 1565
HpyF3I	CTNAG	2 cut(s)	376, 621
HpySE526I	ACGT	4 cut(s)	570, 808, 820, 1824
Hsp92I	GRCGYC	1 cut(s)	808
HspAI	GCGC	1 cut(s)	1893
Ksp22I	TGATCA	3 cut(s)	154, 955, 1527
KspAI	GTTAAC	1 cut(s)	1300
KspI	CCGCGG	1 cut(s)	1468
Kzo9I	GATC	8 cut(s)	13, 154, 243, 463, 573, 730, 955, 1527
LmnI	GCTCC	6 cut(s)	22, 96, 385, 1284, 1757, 1836
Lsp1109I	GCAGC	1 cut(s)	1552
LweI	GCATC	5 cut(s)	294, 1014, 1194, 1546, 1818
MaeI	CTAG	3 cut(s)	1427, 1506, 1614
MaeII	ACGT	4 cut(s)	570, 808, 820, 1824
MaeIII	GTNAC	3 cut(s)	1048, 1334, 1350
MalI	GATC	8 cut(s)	15, 156, 245, 465, 575, 732, 957, 1529
MboI	GATC	8 cut(s)	13, 154, 243, 463, 573, 730, 955, 1527
MhlI	GDGCHC	5 cut(s)	143, 1114, 1254, 1281, 1775
MlyI	GAGTC	1 cut(s)	1697
MmeI	TCCRAC	3 cut(s)	411, 945, 1776
Mph1103I	ATGCAT	1 cut(s)	1072
MroXI	GAANNNNTTC	2 cut(s)	294, 390
MseI	TTAA	4 cut(s)	881, 1290, 1299, 1380
MslI	CAYNNNNRTG	3 cut(s)	312, 782, 1359
MspA1I	CMGCKG	2 cut(s)	1467, 1565
MspI	CCGG	4 cut(s)	93, 558, 1282, 1649
MspR9I	CCNGG	9 cut(s)	93, 94, 123, 1032, 1095, 1283, 1440, 1650, 1807
MvaI	CCWGG	5 cut(s)	123, 1032, 1095, 1440, 1807
MvnI	CGCG	1 cut(s)	1467
MwoI	GCNNNNNNNGC	4 cut(s)	452, 793, 1481, 1565
NciI	CCSGG	4 cut(s)	93, 94, 1283, 1650
NcoI	CCATGG	1 cut(s)	657
NdeI	CATATG	1 cut(s)	1072
NdeII	GATC	8 cut(s)	13, 154, 243, 463, 573, 730, 955, 1527
NlaIV	GGNNCC	3 cut(s)	627, 655, 993
NmuCI	GTSAC	1 cut(s)	1334
NsiI	ATGCAT	1 cut(s)	1072
NspI	RCATGY	5 cut(s)	796, 904, 1056, 1118, 1416
NspV	TTCGAA	1 cut(s)	1146
OliI	CACNNNNGTG	1 cut(s)	312
PaeI	GCATGC	1 cut(s)	904
PaqCI	CACCTGC	1 cut(s)	1475
PciI	ACATGT	1 cut(s)	1114
PcsI	WCGNNNNNNNCGW	1 cut(s)	826
PdmI	GAANNNNTTC	2 cut(s)	294, 390
PfeI	GAWTC	8 cut(s)	134, 206, 221, 274, 484, 509, 710, 1842
PfoI	TCCNGGA	1 cut(s)	1281
PkrI	GCNGC	3 cut(s)	1369, 1466, 1567
PleI	GAGTC	1 cut(s)	1696
PmaCI	CACGTG	1 cut(s)	571
PmlI	CACGTG	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	1696
Ppu21I	YACGTR	1 cut(s)	571
PscI	ACATGT	1 cut(s)	1114
Psp124BI	GAGCTC	1 cut(s)	1254
Psp6I	CCWGG	5 cut(s)	121, 1030, 1093, 1438, 1805
PspCI	CACGTG	1 cut(s)	571
PspFI	CCCAGC	1 cut(s)	504
PspGI	CCWGG	5 cut(s)	121, 1030, 1093, 1438, 1805
PspN4I	GGNNCC	3 cut(s)	627, 655, 993
PspPI	GGNCC	1 cut(s)	991
PstNI	CAGNNNCTG	2 cut(s)	224, 1553
RsaI	GTAC	6 cut(s)	180, 240, 701, 771, 1015, 1268
RsaNI	GTAC	6 cut(s)	179, 239, 700, 770, 1014, 1267
RseI	CAYNNNNRTG	3 cut(s)	312, 782, 1359
SacI	GAGCTC	1 cut(s)	1254
SacII	CCGCGG	1 cut(s)	1468
SaqAI	TTAA	4 cut(s)	881, 1290, 1299, 1380
SatI	GCNGC	3 cut(s)	1368, 1465, 1566
Sau3AI	GATC	8 cut(s)	13, 154, 243, 463, 573, 730, 955, 1527
Sau96I	GGNCC	1 cut(s)	991
ScaI	AGTACT	1 cut(s)	701
SchI	GAGTC	1 cut(s)	1697
ScrFI	CCNGG	9 cut(s)	93, 94, 123, 1032, 1095, 1283, 1440, 1650, 1807
SduI	GDGCHC	5 cut(s)	143, 1114, 1254, 1281, 1775
SfaNI	GCATC	5 cut(s)	294, 1014, 1194, 1546, 1818
SfcI	CTRYAG	2 cut(s)	1404, 1698
Sfr303I	CCGCGG	1 cut(s)	1468
SfuI	TTCGAA	1 cut(s)	1146
SgrBI	CCGCGG	1 cut(s)	1468
SinI	GGWCC	1 cut(s)	991
SmaI	CCCGGG	1 cut(s)	94
SmiMI	CAYNNNNRTG	3 cut(s)	312, 782, 1359
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
SphI	GCATGC	1 cut(s)	904
SsiI	CCGC	8 cut(s)	5, 787, 1367, 1462, 1465, 1467, 1563, 1601
SspI	AATATT	1 cut(s)	1329
SspMI	CTAG	3 cut(s)	1427, 1506, 1614
SstI	GAGCTC	1 cut(s)	1254
StyD4I	CCNGG	9 cut(s)	91, 92, 121, 1030, 1093, 1281, 1438, 1648, 1805
StyI	CCWWGG	2 cut(s)	657, 1138
TaaI	ACNGT	5 cut(s)	178, 925, 963, 1623, 1768
TaiI	ACGT	4 cut(s)	573, 811, 823, 1827
TaqI	TCGA	6 cut(s)	137, 288, 823, 829, 1146, 1638
TatI	WGTACW	2 cut(s)	699, 1013
TauI	GCSGC	2 cut(s)	1370, 1467
TfiI	GAWTC	8 cut(s)	134, 206, 221, 274, 484, 509, 710, 1842
Tru1I	TTAA	4 cut(s)	881, 1290, 1299, 1380
Tru9I	TTAA	4 cut(s)	881, 1290, 1299, 1380
TscAI	CASTG	7 cut(s)	176, 181, 192, 684, 1127, 1749, 1773
TseFI	GTSAC	1 cut(s)	1334
TseI	GCWGC	1 cut(s)	1565
Tsp45I	GTSAC	1 cut(s)	1334
TspGWI	ACGGA	4 cut(s)	35, 74, 196, 1790
TspMI	CCCGGG	1 cut(s)	92
TspRI	CASTG	7 cut(s)	176, 181, 192, 684, 1127, 1749, 1773
VneI	GTGCAC	1 cut(s)	1110
VpaK11BI	GGWCC	1 cut(s)	991
XagI	CCTNNNNNAGG	1 cut(s)	126
XapI	RAATTY	7 cut(s)	294, 388, 825, 1079, 1244, 1286, 1898
XbaI	TCTAGA	1 cut(s)	1426
XceI	RCATGY	5 cut(s)	796, 904, 1056, 1118, 1416
XmaI	CCCGGG	1 cut(s)	92
XmnI	GAANNNNTTC	2 cut(s)	294, 390
XspI	CTAG	3 cut(s)	1427, 1506, 1614
ZraI	GACGTC	1 cut(s)	809
ZrmI	AGTACT	1 cut(s)	701
Zsp2I	ATGCAT	1 cut(s)	1072

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.