RLG00000024692

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Forward (+)
38241145 .. 38246171
5027 bp
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UTR
Exon/CDS
Intron
RLM00000024692

Sequence Viewer

Length: 1590 bp
ATGAAACCTCAAGTGCACTATGGTGAGGATGATTGCCCACTTTCAGCTCCCAGTGACTTTCCAAAGGATGATGAACTTCATTTTGAGATTGAGATGATAGATTTCTTCAAAGCCAAGGTTGTCAGTGATGACTTGGGAGTTGTGAAGAAGGTAATAACTGAAGGTCAGGGTTGGGAATCCCCAAGGGAACCTTATGAAGTGAAAGCCTGGATTTCTGCAAAGACTGGTGATGGGAAAGTGCTTGTTCCACGTACTCAAGGAGAACCGTTTTTCTTTAATTTTGGAAAGTCTGAGATACCTAAAGGTCTTGAGATGGGAATTGGTACAATGTCACGGCAAGAGAAGGCAGTAATATATGTCAGCAGTCAGTATTTGACTCCATCTCCTTTCCTGCCTGTGGTAGAAGGTGTTGAAGAAGTTCATTTTGAAGTGGAGCTTGTCCACTTTATTCAGGTGCGAGACATGCTTGGAGATGGGCGTCTGATTAAAAGGCGTATTCGTGATGGAAAAGGTGAGTTTCCTATGGATTGTCCTCTTCACGACAGCCTTCTACGAGTCCATTACAAGGGCATGATTCTTAATGAGGAAAAGACAATCTTCTTTGATACGAGATTTAACAATAATGGTCAGCCTTTGGAGTTCTGTTCTGGAGAAGGCCTTGTGCCTGAGGGATTTGAAATGTGTGTTCGTTTGATGCTGCCTGGAGAGATAGCTCTGGTCACATGTCCTCCTGATTATGCATACGACAAGTTTGCTAGGCCTGCTAATGTTCCTGAAGGAGCTCATATTCAATGGGAAATTGAGCTTCTTGGTTTTGAAATGCCAAAGGATTGGACTGGTTTGGACTTTACAAGCATAATAGATGAAGCAGAGAAGATAAGAAATACAGGGAACAGGCTATTTAAAGAAGGAAAATTTGAACTTGCCAAGGCAAAGTATGACAAGGTGCTTCGGGAATTTAATCACGTTAATCCACAAGATGATGAAGAAGGGAAAACATTTTCAAACACGAGGAATTTGCTACATCTGAATGTGGCTGCATGCTACCTTAAAATGGGAGAATGCAGAAAATCCATTGAGACATGCAATAAGGTTATAGAGGCAAACCCTGGAAATGTTAAGGCTGTCTACCGCCGTGGAATGGCCTTCATGGCTGCTGGAGATTTTGAGGAAGCAAAGAGTGACTTCAACAAGATGATACAACTTGACAAGTCGATGGAACCAGATGCAACAGCTGCTCTTCTAAAAGTGAAGCAGCAGGAACAGGAAGTTGAGAAGAAGCAACGGAAACAATTCAAGGGACTATTTGACAAGAAGCCAGGGGAAATTTCCGAGGTTGGAACCGAAGAAGATGGAGATAAGACTGCGGATGTAAATCAGAAGAATGATGATCAGGAGGAGGATTTAGATGAAGATACTTCGGAAACCTCTCGTGAAGTTGCAGGGAATGCAGCTCAAACATCAGCCCCCCAAACCACATTCTGGCCCAGATTACTTAGAGTCCTTGGACGGGTAGGATGGACCAACATGCTTTTCAATGTCACATTCCTCTTTGTTCTGGCCTATTTGCTGAACCTGTGGTTTAATTAG

Protein Analysis

530

Amino Acids

60.15

Weight (kDa)

4.99

Isoelectric Point (pI)

41.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 59 - 147 1.8e-06 FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C PF00254 182 - 270 1.3e-15 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012100)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1482
AccI GTMKAC 1 cut(s) 1128
AciI CCGC 2 cut(s) 1132, 1367
AcsI RAATTY 4 cut(s) 914, 956, 1015, 1326
AcuI CTGAAG 2 cut(s) 180, 795
AcyI GRCGYC 1 cut(s) 478
AfaI GTAC 2 cut(s) 253, 325
AfiI CCNNNNNNNGG 6 cut(s) 397, 565, 1054, 1141, 1482, 1510
AflIII ACRYGT 1 cut(s) 722
AjnI CCWGG 4 cut(s) 206, 700, 1108, 1318
AjuI GAANNNNNNNTTGG 2 cut(s) 1517, 1549
AleI CACNNNNGTG 1 cut(s) 21
AluBI AGCT 7 cut(s) 47, 436, 713, 782, 805, 1235, 1454
AluI AGCT 7 cut(s) 47, 436, 713, 782, 805, 1235, 1454
Alw21I GWGCWC 2 cut(s) 18, 784
Alw26I GTCTC 2 cut(s) 453, 1073
Alw44I GTGCAC 1 cut(s) 14
AoxI GGCC 5 cut(s) 655, 758, 1143, 1484, 1560
ApaLI GTGCAC 1 cut(s) 14
ApeKI GCWGC 6 cut(s) 697, 1037, 1154, 1235, 1255, 1451
ApoI RAATTY 4 cut(s) 914, 956, 1015, 1326
Asp700I GAANNNNTTC 2 cut(s) 417, 1292
AspS9I GGNCC 2 cut(s) 1485, 1521
AsuHPI GGTGA 3 cut(s) 35, 239, 524
AvaII GGWCC 1 cut(s) 1521
AxyI CCTNAGG 1 cut(s) 666
BaeGI GKGCMC 1 cut(s) 18
BanII GRGCYC 1 cut(s) 784
BauI CACGAG 2 cut(s) 1009, 1431
Bbv12I GWGCWC 2 cut(s) 18, 784
BbvI GCAGC 6 cut(s) 684, 1024, 1141, 1222, 1267, 1463
BccI CCATC 8 cut(s) 224, 307, 388, 467, 497, 1210, 1346, 1512
BceAI ACGGC 2 cut(s) 350, 1119
BcgI CGANNNNNNTGC 4 cut(s) 734, 768, 1000, 1034
BciT130I CCWGG 4 cut(s) 208, 702, 1110, 1320
BclI TGATCA 1 cut(s) 1390
BcoDI GTCTC 2 cut(s) 453, 1073
BfaI CTAG 1 cut(s) 756
BglI GCCNNNNNGGC 1 cut(s) 1151
BisI GCNGC 6 cut(s) 698, 1038, 1155, 1236, 1256, 1452
BlsI GCNGC 6 cut(s) 699, 1039, 1156, 1237, 1257, 1453
Bme1390I CCNGG 4 cut(s) 208, 702, 1110, 1320
Bme18I GGWCC 1 cut(s) 1521
BmgT120I GGNCC 2 cut(s) 1485, 1521
BmiI GGNNCC 3 cut(s) 189, 1221, 1342
BmrFI CCNGG 4 cut(s) 208, 702, 1110, 1320
BmrI ACTGGG 1 cut(s) 45
BmsI GCATC 2 cut(s) 684, 1216
BmuI ACTGGG 1 cut(s) 45
BpmI CTGGAG 3 cut(s) 669, 723, 1179
BpuEI CTTGAG 2 cut(s) 240, 329
BsaAI YACGTR 1 cut(s) 251
BsaBI GATNNNNATC 1 cut(s) 1374
BsaHI GRCGYC 1 cut(s) 478
BsaJI CCNNGG 8 cut(s) 114, 182, 927, 1108, 1135, 1319, 1332, 1504
BsaXI ACNNNNNCTCC 4 cut(s) 367, 397, 712, 742
Bsc4I CCNNNNNNNGG 6 cut(s) 397, 565, 1054, 1141, 1482, 1510
Bse1I ACTGG 3 cut(s) 51, 229, 841
Bse21I CCTNAGG 1 cut(s) 666
Bse8I GATNNNNATC 1 cut(s) 1374
BseBI CCWGG 4 cut(s) 208, 702, 1110, 1320
BseDI CCNNGG 8 cut(s) 114, 182, 927, 1108, 1135, 1319, 1332, 1504
BseGI GGATG 4 cut(s) 34, 73, 1375, 1523
BseJI GATNNNNATC 1 cut(s) 1374
BseLI CCNNNNNNNGG 6 cut(s) 397, 565, 1054, 1141, 1482, 1510
BseMII CTCAG 2 cut(s) 282, 657
BseNI ACTGG 3 cut(s) 51, 229, 841
BseRI GAGGAG 1 cut(s) 1412
BseSI GKGCMC 1 cut(s) 18
BseXI GCAGC 6 cut(s) 684, 1024, 1141, 1222, 1267, 1463
BshFI GGCC 5 cut(s) 657, 760, 1145, 1486, 1562
BsiHKAI GWGCWC 2 cut(s) 18, 784
BslFI GGGAC 1 cut(s) 1314
BslI CCNNNNNNNGG 6 cut(s) 397, 565, 1054, 1141, 1482, 1510
BsmAI GTCTC 2 cut(s) 453, 1073
BsmFI GGGAC 1 cut(s) 1314
BsmI GAATGC 2 cut(s) 1067, 1453
BsnI GGCC 5 cut(s) 657, 760, 1145, 1486, 1562
Bsp1286I GDGCHC 2 cut(s) 18, 784
Bsp143I GATC 1 cut(s) 1390
BspACI CCGC 2 cut(s) 1132, 1367
BspANI GGCC 5 cut(s) 657, 760, 1145, 1486, 1562
BspCNI CTCAG 2 cut(s) 283, 658
BspLI GGNNCC 3 cut(s) 189, 1221, 1342
BspQI GCTCTTC 1 cut(s) 1245
BsrI ACTGG 3 cut(s) 51, 229, 841
BssECI CCNNGG 8 cut(s) 114, 182, 927, 1108, 1135, 1319, 1332, 1504
BssMI GATC 1 cut(s) 1390
BssNI GRCGYC 1 cut(s) 478
BssSI CACGAG 2 cut(s) 1009, 1431
BssT1I CCWWGG 4 cut(s) 114, 182, 927, 1504
Bst2BI CACGAG 2 cut(s) 1009, 1431
Bst2UI CCWGG 4 cut(s) 208, 702, 1110, 1320
Bst4CI ACNGT 1 cut(s) 267
Bst6I CTCTTC 2 cut(s) 540, 1245
BstACI GRCGYC 1 cut(s) 478
BstAPI GCANNNNNTGC 2 cut(s) 1235, 1448
BstBAI YACGTR 1 cut(s) 251
BstC8I GCNNGC 2 cut(s) 762, 1042
BstDEI CTNAG 3 cut(s) 291, 666, 1496
BstDSI CCRYGG 1 cut(s) 1135
BstF5I GGATG 4 cut(s) 34, 73, 1375, 1523
BstKTI GATC 1 cut(s) 1393
BstMAI GTCTC 2 cut(s) 453, 1073
BstMBI GATC 1 cut(s) 1390
BstMWI GCNNNNNNNGC 5 cut(s) 463, 761, 1151, 1235, 1448
BstNI CCWGG 4 cut(s) 208, 702, 1110, 1320
BstNSI RCATGY 5 cut(s) 466, 726, 1044, 1086, 1531
BstSCI CCNGG 4 cut(s) 206, 700, 1108, 1318
BstSLI GKGCMC 1 cut(s) 18
BstV1I GCAGC 6 cut(s) 684, 1024, 1141, 1222, 1267, 1463
BstXI CCANNNNNNTGG 1 cut(s) 831
Bsu36I CCTNAGG 1 cut(s) 666
BsuRI GGCC 5 cut(s) 657, 760, 1145, 1486, 1562
BtgI CCRYGG 1 cut(s) 1135
BtsCI GGATG 4 cut(s) 34, 73, 1375, 1523
BtsIMutI CAGTG 2 cut(s) 58, 130
Cac8I GCNNGC 2 cut(s) 762, 1042
Cfr13I GGNCC 2 cut(s) 1485, 1521
CseI GACGC 1 cut(s) 467
Csp6I GTAC 2 cut(s) 252, 324
CviAII CATG 7 cut(s) 463, 571, 723, 1041, 1083, 1150, 1528
CviQI GTAC 2 cut(s) 252, 324
DdeI CTNAG 3 cut(s) 291, 666, 1496
DpnI GATC 1 cut(s) 1392
DpnII GATC 1 cut(s) 1390
DraI TTTAAA 1 cut(s) 904
Eam1104I CTCTTC 2 cut(s) 540, 1245
EarI CTCTTC 2 cut(s) 540, 1245
Ecl136II GAGCTC 1 cut(s) 782
Eco130I CCWWGG 4 cut(s) 114, 182, 927, 1504
Eco147I AGGCCT 2 cut(s) 657, 760
Eco24I GRGCYC 1 cut(s) 784
Eco47I GGWCC 1 cut(s) 1521
Eco53kI GAGCTC 1 cut(s) 782
Eco57I CTGAAG 2 cut(s) 180, 795
Eco81I CCTNAGG 1 cut(s) 666
EcoICRI GAGCTC 1 cut(s) 782
EcoRII CCWGG 4 cut(s) 206, 700, 1108, 1318
EcoT14I CCWWGG 4 cut(s) 114, 182, 927, 1504
EcoT22I ATGCAT 1 cut(s) 742
EcoT38I GRGCYC 1 cut(s) 784
ErhI CCWWGG 4 cut(s) 114, 182, 927, 1504
FaeI CATG 7 cut(s) 466, 574, 726, 1044, 1086, 1153, 1531
FalI AAGNNNNNCTT 8 cut(s) 175, 207, 420, 452, 581, 613, 1169, 1201
FaqI GGGAC 1 cut(s) 1314
FatI CATG 7 cut(s) 462, 570, 722, 1040, 1082, 1149, 1527
FbaI TGATCA 1 cut(s) 1390
FblI GTMKAC 1 cut(s) 1128
Fnu4HI GCNGC 6 cut(s) 698, 1038, 1155, 1236, 1256, 1452
FokI GGATG 4 cut(s) 41, 80, 1382, 1530
FriOI GRGCYC 1 cut(s) 784
Fsp4HI GCNGC 6 cut(s) 698, 1038, 1155, 1236, 1256, 1452
FspBI CTAG 1 cut(s) 756
GluI GCNGC 6 cut(s) 698, 1038, 1155, 1236, 1256, 1452
GsuI CTGGAG 3 cut(s) 669, 723, 1179
HaeIII GGCC 5 cut(s) 657, 760, 1145, 1486, 1562
HgaI GACGC 1 cut(s) 467
Hin1I GRCGYC 1 cut(s) 478
Hin1II CATG 7 cut(s) 466, 574, 726, 1044, 1086, 1153, 1531
HinfI GANTC 5 cut(s) 176, 376, 555, 574, 1500
HphI GGTGA 3 cut(s) 35, 239, 524
Hpy166II GTNNAC 3 cut(s) 16, 442, 1129
Hpy188I TCNGA 6 cut(s) 292, 483, 1029, 1333, 1380, 1423
Hpy188III TCNNGA 9 cut(s) 308, 500, 539, 648, 731, 773, 953, 1394, 1433
Hpy8I GTNNAC 3 cut(s) 16, 442, 1129
HpyCH4III ACNGT 1 cut(s) 267
HpyCH4IV ACGT 2 cut(s) 250, 966
HpyCH4V TGCA 9 cut(s) 16, 218, 740, 1040, 1065, 1086, 1229, 1442, 1451
HpyF10VI GCNNNNNNNGC 5 cut(s) 463, 761, 1151, 1235, 1448
HpyF3I CTNAG 3 cut(s) 291, 666, 1496
HpySE526I ACGT 2 cut(s) 250, 966
Hsp92I GRCGYC 1 cut(s) 478
Hsp92II CATG 7 cut(s) 466, 574, 726, 1044, 1086, 1153, 1531
Ksp22I TGATCA 1 cut(s) 1390
Kzo9I GATC 1 cut(s) 1390
LguI GCTCTTC 1 cut(s) 1245
LmnI GCTCC 3 cut(s) 52, 433, 779
Lsp1109I GCAGC 6 cut(s) 684, 1024, 1141, 1222, 1267, 1463
LweI GCATC 2 cut(s) 684, 1216
MaeI CTAG 1 cut(s) 756
MaeII ACGT 2 cut(s) 250, 966
MaeIII GTNAC 5 cut(s) 53, 330, 718, 1181, 1540
MalI GATC 1 cut(s) 1392
MboI GATC 1 cut(s) 1390
MhlI GDGCHC 2 cut(s) 18, 784
MluCI AATT 9 cut(s) 277, 318, 798, 914, 956, 1015, 1292, 1326, 1585
MlyI GAGTC 3 cut(s) 370, 564, 1509
MmeI TCCRAC 1 cut(s) 1318
Mph1103I ATGCAT 1 cut(s) 742
MroXI GAANNNNTTC 2 cut(s) 417, 1292
MslI CAYNNNNRTG 2 cut(s) 21, 1029
MspA1I CMGCKG 1 cut(s) 1235
MspR9I CCNGG 4 cut(s) 208, 702, 1110, 1320
Mva1269I GAATGC 2 cut(s) 1067, 1453
MvaI CCWGG 4 cut(s) 208, 702, 1110, 1320
MwoI GCNNNNNNNGC 5 cut(s) 463, 761, 1151, 1235, 1448
NdeII GATC 1 cut(s) 1390
NlaIII CATG 7 cut(s) 466, 574, 726, 1044, 1086, 1153, 1531
NlaIV GGNNCC 3 cut(s) 189, 1221, 1342
NmuCI GTSAC 5 cut(s) 53, 330, 718, 1181, 1540
NsiI ATGCAT 1 cut(s) 742
NspI RCATGY 5 cut(s) 466, 726, 1044, 1086, 1531
OliI CACNNNNGTG 1 cut(s) 21
PaeI GCATGC 1 cut(s) 1044
PceI AGGCCT 2 cut(s) 657, 760
PciI ACATGT 1 cut(s) 722
PciSI GCTCTTC 1 cut(s) 1245
PctI GAATGC 2 cut(s) 1067, 1453
PdmI GAANNNNTTC 2 cut(s) 417, 1292
PfeI GAWTC 2 cut(s) 176, 574
PflMI CCANNNNNTGG 1 cut(s) 1482
PkrI GCNGC 6 cut(s) 699, 1039, 1156, 1237, 1257, 1453
PleI GAGTC 3 cut(s) 370, 563, 1508
PpsI GAGTC 3 cut(s) 370, 563, 1508
Ppu21I YACGTR 1 cut(s) 251
PscI ACATGT 1 cut(s) 722
Psp124BI GAGCTC 1 cut(s) 784
Psp6I CCWGG 4 cut(s) 206, 700, 1108, 1318
PspGI CCWGG 4 cut(s) 206, 700, 1108, 1318
PspN4I GGNNCC 3 cut(s) 189, 1221, 1342
PspPI GGNCC 2 cut(s) 1485, 1521
PvuII CAGCTG 1 cut(s) 1235
RsaI GTAC 2 cut(s) 253, 325
RsaNI GTAC 2 cut(s) 252, 324
RseI CAYNNNNRTG 2 cut(s) 21, 1029
SacI GAGCTC 1 cut(s) 784
SapI GCTCTTC 1 cut(s) 1245
SatI GCNGC 6 cut(s) 698, 1038, 1155, 1236, 1256, 1452
Sau3AI GATC 1 cut(s) 1390
Sau96I GGNCC 2 cut(s) 1485, 1521
SchI GAGTC 3 cut(s) 370, 564, 1509
ScrFI CCNGG 4 cut(s) 208, 702, 1110, 1320
SduI GDGCHC 2 cut(s) 18, 784
SfaNI GCATC 2 cut(s) 684, 1216
SinI GGWCC 1 cut(s) 1521
SmiMI CAYNNNNRTG 2 cut(s) 21, 1029
SmlI CTYRAG 3 cut(s) 9, 255, 308
SmoI CTYRAG 3 cut(s) 9, 255, 308
SphI GCATGC 1 cut(s) 1044
Sse9I AATT 9 cut(s) 277, 318, 798, 914, 956, 1015, 1292, 1326, 1585
SseBI AGGCCT 2 cut(s) 657, 760
SsiI CCGC 2 cut(s) 1132, 1367
SspMI CTAG 1 cut(s) 756
SstI GAGCTC 1 cut(s) 784
StuI AGGCCT 2 cut(s) 657, 760
StyD4I CCNGG 4 cut(s) 206, 700, 1108, 1318
StyI CCWWGG 4 cut(s) 114, 182, 927, 1504
TaaI ACNGT 1 cut(s) 267
TaiI ACGT 2 cut(s) 253, 969
TaqI TCGA 1 cut(s) 1214
TasI AATT 9 cut(s) 277, 318, 798, 914, 956, 1015, 1292, 1326, 1585
TfiI GAWTC 2 cut(s) 176, 574
TscAI CASTG 2 cut(s) 58, 130
TseFI GTSAC 5 cut(s) 53, 330, 718, 1181, 1540
TseI GCWGC 6 cut(s) 697, 1037, 1154, 1235, 1255, 1451
Tsp45I GTSAC 5 cut(s) 53, 330, 718, 1181, 1540
TspDTI ATGAA 9 cut(s) 17, 68, 87, 210, 410, 879, 999, 1138, 1425
TspGWI ACGGA 1 cut(s) 1300
TspRI CASTG 2 cut(s) 58, 130
Van91I CCANNNNNTGG 1 cut(s) 1482
VneI GTGCAC 1 cut(s) 14
VpaK11BI GGWCC 1 cut(s) 1521
XapI RAATTY 4 cut(s) 914, 956, 1015, 1326
XceI RCATGY 5 cut(s) 466, 726, 1044, 1086, 1531
XmiI GTMKAC 1 cut(s) 1128
XmnI GAANNNNTTC 2 cut(s) 417, 1292
XspI CTAG 1 cut(s) 756
Zsp2I ATGCAT 1 cut(s) 742
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.