Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0012100

Physical Location & Seq

Genomic Coordinates Forward (+)

37762057 .. 37768143

Gene Structure 6087 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00415620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1914 bp

ATGGCTGTAATTGAAGCCGCCGCGCCACAGAAGCCGAAGAAAGAACCAACCGATGACGAAAAGAGGAGGATGAAAATAGTGGCCGGAAGCTTGATGAAAGCAGTGATCAGACCTGGCGGAGGCGATTCAACACCTTCAGATGGTGATCAGGTTATATATCATTGCACTGTTAGAACACTGGATGGAGTTATTGTTGAATCTTCAAGATCAGAATATGGAGGCAAGGGAATCCCCATACGAAGTGTTTTGGGAAAGAGCAAGATGATAGTTGGATTGCTAGAAGGACTTCCAACTATGCCCAAGGGTGAAATTGCAATGTTAAAAATGAAACCTCAAGTGCACTATGGTGAGGATGATTGCCCACTTTCAGCTCCCAGTGACTTTCCAAAGGATGATGAACTTCATTTTGAGATTGAGATGATAGATTTCTTCAAAGCCAAGGTTGTTAGTGATGACTTGGGAGTTGTGAAGAAGGTAATAACTGAAGGTCAGGGTTGGGAATCCCCAAGGGAACCTTATGAAGTGAAAGCCTGGATTTCTGCAAAGACTGGTGATGGGAAAGTGCTTGTTCCACGTACTCAAGGAGAACCGTTTTTCTTTAATTTTGGAAAGTCTGAGATACCTAAAGGTCTTGAGATGGGAATTGGTACAATGTCACGGCAAGAGAAGGCAGTAATATATGTCAGCAGTCAGTATTTGACTCCATCTCCTTTCCTGCCTGTGGTAGAAGGTGTTGAAGAAGTTCATTTTGAAGTGGAGCTTGTCCACTTTATTCAGGTGCGAGACATGCTTGGAGATGGGCGTCTGATTAAAAGGCGTATTCGTGATGGAAAAGGTGAGTTTCCTATGGATTGTCCTCTTCACGACAGCCTTCTACGAGTCCATTACAAGGGCATGATTCTTAATAAGGAAAAGACAATCTTCTTTGATACGAGAGTTAATAATAATGGTCAGCCTTTGGAGTTCTGTTCTGGAGAAGGCCTTGTGCCTGAGGGATTTGAAATGTGTGTTCGTTTGATGCTGCCTGGAGAGATAGCTCTGGTCACATGTCCTCCTGATTATGCATACGACAAGTTTGCTAGGCCTGCTAATGTTCCTGAAGGAGCTCATATTCAATGGGAAATCGAGCTTCTTGGTTTTGAAATGCCAAAGGATTGGACTGGTTTGGACTTTACAAGCATAATAGATGAAGCAGAGAAGATAAGAAATACAGGGAACAGGCTATTTAAAGAAGGAAAATTTGAACTTGCCAAGGCAAAGTATGACAAGGTGCTACGGGAATTTAATCACGTTAATCCACAAGATGATGAAGAAGGGAAAACATTTTCAAACACGAGGAATTTGCTACATCTGAATGTGGCTGCGTGCTACCTTAAAATGGGAGAATGCAGAAAATCCATTGAGACATGCAACAAGGTTATAGAGGCAAACCCTGGACATGTTAAGGCTCTCTACCGCCGTGGAATGGCCTTCATGGCTGCTGGAGATTTTGAGGAAGCAAAGAGTGACTTCAACAAGATGATACAACTTGACAAGTCGACGGAACCAGATGCAACAGCTGCTCTTTTAAAAGTGAAGCAGCAGGAACTGGGAGTTGAGAAGAAGCAACGGCAACAATTCAAGGGACTATTTGACAAGAAGCCGGGGGAAATTTCCGAGGTTGGAACTGAAGAAGATGGAGATAAGACTGCGGATGTAAATCAGAAGAAGGATGATCAGGAGGAGGATTTAGATGAAGATACTTCGGAAACCTCTCGTGAAGTTGCGGGGAATGCAGGTCAAACATCAGCCCCCCAAACCACATTCTGGCCCAGATTACTTAGAGTCCTTGGACGGGTAGGATGGACCAACATGCTTTTCAATGTCACGTTCCTCTTTGTTCTGGCCTATTTGCTGAACCTGTGGTTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000038 GO:0000413 GO:0000902 GO:0003006 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005829 GO:0006082 GO:0006457 GO:0006464 GO:0006629 GO:0006631 GO:0006633 GO:0006807 GO:0007163 GO:0007275 GO:0007389 GO:0008144 GO:0008150 GO:0008152 GO:0008610 GO:0009058 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009790 GO:0009791 GO:0009793 GO:0009826 GO:0009880 GO:0009987 GO:0010033 GO:0010154 GO:0012505 GO:0016043 GO:0016049 GO:0016053 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0019752 GO:0022414 GO:0022622 GO:0030010 GO:0030154 GO:0032501 GO:0032502 GO:0032787 GO:0032989 GO:0036211 GO:0040007 GO:0042221 GO:0042761 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0048316 GO:0048364 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0061077 GO:0061458 GO:0071704 GO:0071840 GO:0072330 GO:0090696 GO:0097159 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_6 TPR_8

Protein Analysis

637

Amino Acids

71.5

Weight (kDa)

5.37

Isoelectric Point (pI)

44.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	42 - 140	3.4e-16	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	167 - 255	2.4e-06	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	290 - 378	2.2e-15	FKBP-type peptidyl-prolyl cis-trans isomerase
TPR_1	PF00515	481 - 512	2.6e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54010 AT3G54010
fragaria_vesca	FvH4_6g12640 FvH4_6g12640 FvH4_6g12640
malus_domestica	MD04G1140300.v1.1 MD12G1155600.v1.1
prunus_persica	Prupe.6G265400_v2.0.a1
pyrus_communis	pycom04g12790 pycom12g14770
rosa_chinensis	RchiOBHm_Chr3g0464491
rosa_laevigata	RLG00000024692
rosa_multiflora	Rmu_sc0003074.1_g000006
rosa_roxburghii	Rroxscaffold_6G00415620
rosa_rugosa	Rorug03G0072600
rosa_samantha	Rh3BG134800 Rh3CG137300 Rh3DG136100
rosa_wichuraiana	Rw3G011020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1766
AccB7I	CCANNNNNTGG	1 cut(s)	1806
AccI	GTMKAC	1 cut(s)	1538
AccII	CGCG	1 cut(s)	23
AciI	CCGC	6 cut(s)	18, 21, 117, 1456, 1691, 1766
AcoI	YGGCCR	1 cut(s)	81
AcsI	RAATTY	4 cut(s)	1238, 1280, 1339, 1650
AcuI	CTGAAG	4 cut(s)	120, 504, 1119, 1689
AcyI	GRCGYC	1 cut(s)	802
AfaI	GTAC	2 cut(s)	577, 649
AfiI	CCNNNNNNNGG	8 cut(s)	119, 140, 721, 889, 1378, 1465, 1806, 1834
AflIII	ACRYGT	2 cut(s)	1046, 1438
AjnI	CCWGG	4 cut(s)	112, 530, 1024, 1432
AjuI	GAANNNNNNNTTGG	2 cut(s)	1841, 1873
AleI	CACNNNNGTG	1 cut(s)	345
AluBI	AGCT	7 cut(s)	90, 371, 760, 1037, 1106, 1129, 1559
AluI	AGCT	7 cut(s)	90, 371, 760, 1037, 1106, 1129, 1559
Alw21I	GWGCWC	2 cut(s)	342, 1108
Alw26I	GTCTC	2 cut(s)	777, 1397
Alw44I	GTGCAC	1 cut(s)	338
AlwNI	CAGNNNCTG	1 cut(s)	1588
AoxI	GGCC	6 cut(s)	81, 979, 1082, 1467, 1808, 1884
ApaLI	GTGCAC	1 cut(s)	338
ApeKI	GCWGC	5 cut(s)	1021, 1361, 1478, 1559, 1579
ApoI	RAATTY	4 cut(s)	1238, 1280, 1339, 1650
Asp700I	GAANNNNTTC	2 cut(s)	285, 741
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	2 cut(s)	1809, 1845
AsuC2I	CCSGG	1 cut(s)	1644
AsuHPI	GGTGA	5 cut(s)	155, 317, 359, 563, 848
AvaII	GGWCC	1 cut(s)	1845
AxyI	CCTNAGG	1 cut(s)	990
BaeGI	GKGCMC	1 cut(s)	342
BaeI	ACNNNNGTAYC	2 cut(s)	921, 954
BanII	GRGCYC	1 cut(s)	1108
BauI	CACGAG	2 cut(s)	1333, 1755
Bbv12I	GWGCWC	2 cut(s)	342, 1108
BbvI	GCAGC	5 cut(s)	1008, 1348, 1465, 1546, 1591
BccI	CCATC	9 cut(s)	134, 176, 548, 631, 712, 791, 821, 1670, 1836
BceAI	ACGGC	3 cut(s)	674, 1443, 1625
BcgI	CGANNNNNNTGC	4 cut(s)	1058, 1092, 1324, 1358
BciT130I	CCWGG	4 cut(s)	114, 532, 1026, 1434
BclI	TGATCA	3 cut(s)	105, 145, 1714
BcnI	CCSGG	1 cut(s)	1644
BcoDI	GTCTC	2 cut(s)	777, 1397
BfaI	CTAG	2 cut(s)	278, 1080
BfuAI	ACCTGC	1 cut(s)	1766
BglI	GCCNNNNNGGC	1 cut(s)	1475
BisI	GCNGC	7 cut(s)	18, 21, 1022, 1362, 1479, 1560, 1580
BlsI	GCNGC	7 cut(s)	19, 22, 1023, 1363, 1480, 1561, 1581
Bme1390I	CCNGG	5 cut(s)	114, 532, 1026, 1434, 1644
Bme18I	GGWCC	1 cut(s)	1845
BmgT120I	GGNCC	2 cut(s)	1809, 1845
BmiI	GGNNCC	2 cut(s)	513, 1545
BmrFI	CCNGG	5 cut(s)	114, 532, 1026, 1434, 1644
BmrI	ACTGGG	2 cut(s)	369, 1598
BmsI	GCATC	2 cut(s)	1008, 1540
BmuI	ACTGGG	2 cut(s)	369, 1598
BpmI	CTGGAG	3 cut(s)	993, 1047, 1503
BpuEI	CTTGAG	3 cut(s)	318, 564, 653
BpuMI	CCSGG	1 cut(s)	1644
BsaAI	YACGTR	1 cut(s)	575
BsaBI	GATNNNNATC	2 cut(s)	144, 1698
BsaHI	GRCGYC	1 cut(s)	802
BsaJI	CCNNGG	9 cut(s)	300, 438, 506, 1251, 1432, 1459, 1643, 1656, 1828
BsaXI	ACNNNNNCTCC	6 cut(s)	177, 207, 691, 721, 1036, 1066
Bsc4I	CCNNNNNNNGG	8 cut(s)	119, 140, 721, 889, 1378, 1465, 1806, 1834
Bse1I	ACTGG	5 cut(s)	183, 375, 553, 1165, 1593
Bse21I	CCTNAGG	1 cut(s)	990
Bse3DI	GCAATG	2 cut(s)	160, 321
Bse8I	GATNNNNATC	2 cut(s)	144, 1698
BseBI	CCWGG	4 cut(s)	114, 532, 1026, 1434
BseDI	CCNNGG	9 cut(s)	300, 438, 506, 1251, 1432, 1459, 1643, 1656, 1828
BseGI	GGATG	7 cut(s)	75, 187, 358, 397, 1699, 1717, 1847
BseJI	GATNNNNATC	2 cut(s)	144, 1698
BseLI	CCNNNNNNNGG	8 cut(s)	119, 140, 721, 889, 1378, 1465, 1806, 1834
BseMI	GCAATG	2 cut(s)	160, 321
BseMII	CTCAG	2 cut(s)	606, 981
BseNI	ACTGG	5 cut(s)	183, 375, 553, 1165, 1593
BseRI	GAGGAG	2 cut(s)	79, 1736
BseSI	GKGCMC	1 cut(s)	342
BseXI	GCAGC	5 cut(s)	1008, 1348, 1465, 1546, 1591
Bsh1236I	CGCG	1 cut(s)	23
BshFI	GGCC	6 cut(s)	83, 981, 1084, 1469, 1810, 1886
BsiHKAI	GWGCWC	2 cut(s)	342, 1108
BsiSI	CCGG	2 cut(s)	84, 1643
BslFI	GGGAC	1 cut(s)	1638
BslI	CCNNNNNNNGG	8 cut(s)	119, 140, 721, 889, 1378, 1465, 1806, 1834
BsmAI	GTCTC	2 cut(s)	777, 1397
BsmFI	GGGAC	1 cut(s)	1638
BsmI	GAATGC	2 cut(s)	1391, 1777
BsnI	GGCC	6 cut(s)	83, 981, 1084, 1469, 1810, 1886
Bsp1286I	GDGCHC	2 cut(s)	342, 1108
Bsp143I	GATC	4 cut(s)	105, 145, 206, 1714
BspACI	CCGC	6 cut(s)	18, 21, 117, 1456, 1691, 1766
BspANI	GGCC	6 cut(s)	83, 981, 1084, 1469, 1810, 1886
BspCNI	CTCAG	2 cut(s)	607, 982
BspFNI	CGCG	1 cut(s)	23
BspLI	GGNNCC	2 cut(s)	513, 1545
BspMI	ACCTGC	1 cut(s)	1766
BsrDI	GCAATG	2 cut(s)	160, 321
BsrI	ACTGG	5 cut(s)	183, 375, 553, 1165, 1593
BssECI	CCNNGG	9 cut(s)	300, 438, 506, 1251, 1432, 1459, 1643, 1656, 1828
BssMI	GATC	4 cut(s)	105, 145, 206, 1714
BssNI	GRCGYC	1 cut(s)	802
BssSI	CACGAG	2 cut(s)	1333, 1755
BssT1I	CCWWGG	5 cut(s)	300, 438, 506, 1251, 1828
Bst2BI	CACGAG	2 cut(s)	1333, 1755
Bst2UI	CCWGG	4 cut(s)	114, 532, 1026, 1434
Bst4CI	ACNGT	2 cut(s)	169, 591
Bst6I	CTCTTC	1 cut(s)	864
BstACI	GRCGYC	1 cut(s)	802
BstAPI	GCANNNNNTGC	1 cut(s)	1559
BstBAI	YACGTR	1 cut(s)	575
BstC8I	GCNNGC	2 cut(s)	1086, 1366
BstDEI	CTNAG	3 cut(s)	615, 990, 1820
BstDSI	CCRYGG	1 cut(s)	1459
BstENI	CCTNNNNNAGG	1 cut(s)	117
BstF5I	GGATG	7 cut(s)	75, 187, 358, 397, 1699, 1717, 1847
BstFNI	CGCG	1 cut(s)	23
BstHHI	GCGC	1 cut(s)	25
BstKTI	GATC	4 cut(s)	108, 148, 209, 1717
BstMAI	GTCTC	2 cut(s)	777, 1397
BstMBI	GATC	4 cut(s)	105, 145, 206, 1714
BstMWI	GCNNNNNNNGC	6 cut(s)	31, 787, 1085, 1475, 1559, 1772
BstNI	CCWGG	4 cut(s)	114, 532, 1026, 1434
BstNSI	RCATGY	5 cut(s)	790, 1050, 1410, 1442, 1855
BstSCI	CCNGG	5 cut(s)	112, 530, 1024, 1432, 1642
BstSLI	GKGCMC	1 cut(s)	342
BstUI	CGCG	1 cut(s)	23
BstV1I	GCAGC	5 cut(s)	1008, 1348, 1465, 1546, 1591
BstXI	CCANNNNNNTGG	1 cut(s)	1155
Bsu36I	CCTNAGG	1 cut(s)	990
BsuRI	GGCC	6 cut(s)	83, 981, 1084, 1469, 1810, 1886
BtgI	CCRYGG	1 cut(s)	1459
BtsCI	GGATG	7 cut(s)	75, 187, 358, 397, 1699, 1717, 1847
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	4 cut(s)	108, 165, 176, 382
BveI	ACCTGC	1 cut(s)	1766
Cac8I	GCNNGC	2 cut(s)	1086, 1366
CaiI	CAGNNNCTG	1 cut(s)	1588
CfoI	GCGC	1 cut(s)	25
Cfr13I	GGNCC	2 cut(s)	1809, 1845
CseI	GACGC	1 cut(s)	791
Csp6I	GTAC	2 cut(s)	576, 648
CviAII	CATG	7 cut(s)	787, 895, 1047, 1407, 1439, 1474, 1852
CviQI	GTAC	2 cut(s)	576, 648
DdeI	CTNAG	3 cut(s)	615, 990, 1820
DpnI	GATC	4 cut(s)	107, 147, 208, 1716
DpnII	GATC	4 cut(s)	105, 145, 206, 1714
DraI	TTTAAA	2 cut(s)	1228, 1569
EaeI	YGGCCR	1 cut(s)	81
Eam1104I	CTCTTC	1 cut(s)	864
EarI	CTCTTC	1 cut(s)	864
EciI	GGCGGA	1 cut(s)	132
Ecl136II	GAGCTC	1 cut(s)	1106
Eco130I	CCWWGG	5 cut(s)	300, 438, 506, 1251, 1828
Eco147I	AGGCCT	2 cut(s)	981, 1084
Eco24I	GRGCYC	1 cut(s)	1108
Eco47I	GGWCC	1 cut(s)	1845
Eco53kI	GAGCTC	1 cut(s)	1106
Eco57I	CTGAAG	4 cut(s)	120, 504, 1119, 1689
Eco81I	CCTNAGG	1 cut(s)	990
EcoICRI	GAGCTC	1 cut(s)	1106
EcoNI	CCTNNNNNAGG	1 cut(s)	117
EcoRII	CCWGG	4 cut(s)	112, 530, 1024, 1432
EcoT14I	CCWWGG	5 cut(s)	300, 438, 506, 1251, 1828
EcoT22I	ATGCAT	1 cut(s)	1066
EcoT38I	GRGCYC	1 cut(s)	1108
ErhI	CCWWGG	5 cut(s)	300, 438, 506, 1251, 1828
FaeI	CATG	7 cut(s)	790, 898, 1050, 1410, 1442, 1477, 1855
FalI	AAGNNNNNCTT	8 cut(s)	499, 531, 744, 776, 905, 937, 1493, 1525
FaqI	GGGAC	1 cut(s)	1638
FatI	CATG	7 cut(s)	786, 894, 1046, 1406, 1438, 1473, 1851
FauI	CCCGC	1 cut(s)	1759
FbaI	TGATCA	3 cut(s)	105, 145, 1714
FblI	GTMKAC	1 cut(s)	1538
Fnu4HI	GCNGC	7 cut(s)	18, 21, 1022, 1362, 1479, 1560, 1580
FokI	GGATG	7 cut(s)	82, 194, 365, 404, 1706, 1724, 1854
FriOI	GRGCYC	1 cut(s)	1108
Fsp4HI	GCNGC	7 cut(s)	18, 21, 1022, 1362, 1479, 1560, 1580
FspBI	CTAG	2 cut(s)	278, 1080
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	7 cut(s)	18, 21, 1022, 1362, 1479, 1560, 1580
GsuI	CTGGAG	3 cut(s)	993, 1047, 1503
HaeIII	GGCC	6 cut(s)	83, 981, 1084, 1469, 1810, 1886
HapII	CCGG	2 cut(s)	84, 1643
HgaI	GACGC	1 cut(s)	791
HhaI	GCGC	1 cut(s)	25
Hin1I	GRCGYC	1 cut(s)	802
Hin1II	CATG	7 cut(s)	790, 898, 1050, 1410, 1442, 1477, 1855
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HincII	GTYRAC	1 cut(s)	1539
HindII	GTYRAC	1 cut(s)	1539
HindIII	AAGCTT	1 cut(s)	88
HinfI	GANTC	8 cut(s)	125, 197, 228, 500, 700, 879, 898, 1824
HpaII	CCGG	2 cut(s)	84, 1643
HphI	GGTGA	5 cut(s)	155, 317, 359, 563, 848
Hpy166II	GTNNAC	3 cut(s)	340, 766, 1539
Hpy188I	TCNGA	9 cut(s)	110, 139, 211, 616, 807, 1353, 1657, 1704, 1747
Hpy188III	TCNNGA	9 cut(s)	204, 632, 824, 863, 972, 1055, 1097, 1718, 1757
Hpy8I	GTNNAC	3 cut(s)	340, 766, 1539
Hpy99I	CGWCG	1 cut(s)	1543
HpyCH4III	ACNGT	2 cut(s)	169, 591
HpyCH4IV	ACGT	3 cut(s)	574, 1290, 1868
HpyCH4V	TGCA	9 cut(s)	165, 314, 340, 542, 1064, 1389, 1410, 1553, 1775
HpyF10VI	GCNNNNNNNGC	6 cut(s)	31, 787, 1085, 1475, 1559, 1772
HpyF3I	CTNAG	3 cut(s)	615, 990, 1820
HpySE526I	ACGT	3 cut(s)	574, 1290, 1868
Hsp92I	GRCGYC	1 cut(s)	802
Hsp92II	CATG	7 cut(s)	790, 898, 1050, 1410, 1442, 1477, 1855
HspAI	GCGC	1 cut(s)	23
Ksp22I	TGATCA	3 cut(s)	105, 145, 1714
Kzo9I	GATC	4 cut(s)	105, 145, 206, 1714
LmnI	GCTCC	3 cut(s)	376, 757, 1103
Lsp1109I	GCAGC	5 cut(s)	1008, 1348, 1465, 1546, 1591
LweI	GCATC	2 cut(s)	1008, 1540
MaeI	CTAG	2 cut(s)	278, 1080
MaeII	ACGT	3 cut(s)	574, 1290, 1868
MaeIII	GTNAC	5 cut(s)	377, 654, 1042, 1505, 1864
MalI	GATC	4 cut(s)	107, 147, 208, 1716
MboI	GATC	4 cut(s)	105, 145, 206, 1714
MhlI	GDGCHC	2 cut(s)	342, 1108
MlyI	GAGTC	3 cut(s)	694, 888, 1833
MmeI	TCCRAC	3 cut(s)	250, 314, 1642
Mph1103I	ATGCAT	1 cut(s)	1066
MroXI	GAANNNNTTC	2 cut(s)	285, 741
MslI	CAYNNNNRTG	2 cut(s)	345, 1353
MspA1I	CMGCKG	1 cut(s)	1559
MspI	CCGG	2 cut(s)	84, 1643
MspR9I	CCNGG	5 cut(s)	114, 532, 1026, 1434, 1644
Mva1269I	GAATGC	2 cut(s)	1391, 1777
MvaI	CCWGG	4 cut(s)	114, 532, 1026, 1434
MvnI	CGCG	1 cut(s)	23
MwoI	GCNNNNNNNGC	6 cut(s)	31, 787, 1085, 1475, 1559, 1772
NciI	CCSGG	1 cut(s)	1644
NdeII	GATC	4 cut(s)	105, 145, 206, 1714
NlaIII	CATG	7 cut(s)	790, 898, 1050, 1410, 1442, 1477, 1855
NlaIV	GGNNCC	2 cut(s)	513, 1545
NmuCI	GTSAC	5 cut(s)	377, 654, 1042, 1505, 1864
NsiI	ATGCAT	1 cut(s)	1066
NspI	RCATGY	5 cut(s)	790, 1050, 1410, 1442, 1855
OliI	CACNNNNGTG	1 cut(s)	345
PceI	AGGCCT	2 cut(s)	981, 1084
PciI	ACATGT	2 cut(s)	1046, 1438
PctI	GAATGC	2 cut(s)	1391, 1777
PdmI	GAANNNNTTC	2 cut(s)	285, 741
PfeI	GAWTC	5 cut(s)	125, 197, 228, 500, 898
PflMI	CCANNNNNTGG	1 cut(s)	1806
PkrI	GCNGC	7 cut(s)	19, 22, 1023, 1363, 1480, 1561, 1581
PleI	GAGTC	3 cut(s)	694, 887, 1832
PpsI	GAGTC	3 cut(s)	694, 887, 1832
Ppu21I	YACGTR	1 cut(s)	575
PscI	ACATGT	2 cut(s)	1046, 1438
Psp124BI	GAGCTC	1 cut(s)	1108
Psp6I	CCWGG	4 cut(s)	112, 530, 1024, 1432
PspGI	CCWGG	4 cut(s)	112, 530, 1024, 1432
PspN4I	GGNNCC	2 cut(s)	513, 1545
PspPI	GGNCC	2 cut(s)	1809, 1845
PstNI	CAGNNNCTG	1 cut(s)	1588
PvuII	CAGCTG	1 cut(s)	1559
RsaI	GTAC	2 cut(s)	577, 649
RsaNI	GTAC	2 cut(s)	576, 648
RseI	CAYNNNNRTG	2 cut(s)	345, 1353
SacI	GAGCTC	1 cut(s)	1108
SalI	GTCGAC	1 cut(s)	1537
SatI	GCNGC	7 cut(s)	18, 21, 1022, 1362, 1479, 1560, 1580
Sau3AI	GATC	4 cut(s)	105, 145, 206, 1714
Sau96I	GGNCC	2 cut(s)	1809, 1845
SchI	GAGTC	3 cut(s)	694, 888, 1833
ScrFI	CCNGG	5 cut(s)	114, 532, 1026, 1434, 1644
SduI	GDGCHC	2 cut(s)	342, 1108
SfaNI	GCATC	2 cut(s)	1008, 1540
SinI	GGWCC	1 cut(s)	1845
SmiMI	CAYNNNNRTG	2 cut(s)	345, 1353
SmlI	CTYRAG	3 cut(s)	333, 579, 632
SmoI	CTYRAG	3 cut(s)	333, 579, 632
SseBI	AGGCCT	2 cut(s)	981, 1084
SsiI	CCGC	6 cut(s)	18, 21, 117, 1456, 1691, 1766
SspMI	CTAG	2 cut(s)	278, 1080
SstI	GAGCTC	1 cut(s)	1108
StuI	AGGCCT	2 cut(s)	981, 1084
StyD4I	CCNGG	5 cut(s)	112, 530, 1024, 1432, 1642
StyI	CCWWGG	5 cut(s)	300, 438, 506, 1251, 1828
TaaI	ACNGT	2 cut(s)	169, 591
TaiI	ACGT	3 cut(s)	577, 1293, 1871
TaqI	TCGA	2 cut(s)	1125, 1538
TauI	GCSGC	2 cut(s)	20, 23
TfiI	GAWTC	5 cut(s)	125, 197, 228, 500, 898
TscAI	CASTG	4 cut(s)	108, 172, 183, 382
TseFI	GTSAC	5 cut(s)	377, 654, 1042, 1505, 1864
TseI	GCWGC	5 cut(s)	1021, 1361, 1478, 1559, 1579
Tsp45I	GTSAC	5 cut(s)	377, 654, 1042, 1505, 1864
TspGWI	ACGGA	1 cut(s)	1556
TspRI	CASTG	4 cut(s)	108, 172, 183, 382
Van91I	CCANNNNNTGG	1 cut(s)	1806
VneI	GTGCAC	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	1845
XagI	CCTNNNNNAGG	1 cut(s)	117
XapI	RAATTY	4 cut(s)	1238, 1280, 1339, 1650
XceI	RCATGY	5 cut(s)	790, 1050, 1410, 1442, 1855
XmiI	GTMKAC	1 cut(s)	1538
XmnI	GAANNNNTTC	2 cut(s)	285, 741
XspI	CTAG	2 cut(s)	278, 1080
Zsp2I	ATGCAT	1 cut(s)	1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.