Peptidyl-prolyl cis-trans isomerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G54010 AT3G54010 |
| fragaria_vesca | FvH4_6g12640 FvH4_6g12640 FvH4_6g12640 |
| malus_domestica | MD04G1140300.v1.1 MD12G1155600.v1.1 |
| prunus_persica | Prupe.6G265400_v2.0.a1 |
| pyrus_communis | pycom04g12790 pycom12g14770 |
| rosa_chinensis | RchiOBHm_Chr3g0464491 |
| rosa_laevigata | RLG00000024692 |
| rosa_multiflora | Rmu_sc0003074.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00415620 |
| rosa_rugosa | Rorug03G0072600 |
| rosa_samantha | Rh3BG134800 Rh3CG137300 Rh3DG136100 |
| rosa_wichuraiana | Rw3G011020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 900 |
| Acc65I | GGTACC | 1 cut(s) | 631 |
| AccB1I | GGYRCC | 3 cut(s) | 631, 813, 1033 |
| AciI | CCGC | 9 cut(s) | 38, 41, 92, 113, 390, 1374, 1468, 1621, 1840 |
| AcoI | YGGCCR | 2 cut(s) | 93, 1841 |
| AcsI | RAATTY | 4 cut(s) | 1085, 1180, 1292, 1662 |
| AcuI | CTGAAG | 5 cut(s) | 132, 332, 1059, 1406, 1701 |
| AcyI | GRCGYC | 1 cut(s) | 814 |
| AfaI | GTAC | 4 cut(s) | 241, 633, 661, 1852 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 131, 152, 733, 901, 1390, 1477, 1839 |
| AflIII | ACRYGT | 3 cut(s) | 253, 889, 1450 |
| AgsI | TTSAA | 9 cut(s) | 141, 334, 422, 764, 1013, 1127, 1187, 1240, 1525 |
| AjnI | CCWGG | 8 cut(s) | 24, 518, 542, 730, 1444, 1654, 1793, 1843 |
| AleI | CACNNNNGTG | 1 cut(s) | 357 |
| AluBI | AGCT | 5 cut(s) | 101, 772, 1049, 1141, 1571 |
| AluI | AGCT | 5 cut(s) | 101, 772, 1049, 1141, 1571 |
| Alw21I | GWGCWC | 2 cut(s) | 354, 1120 |
| Alw44I | GTGCAC | 1 cut(s) | 350 |
| Ama87I | CYCGRG | 1 cut(s) | 1001 |
| AoxI | GGCC | 7 cut(s) | 93, 122, 991, 1094, 1479, 1811, 1841 |
| ApaLI | GTGCAC | 1 cut(s) | 350 |
| ApeKI | GCWGC | 2 cut(s) | 1571, 1829 |
| ApoI | RAATTY | 4 cut(s) | 1085, 1180, 1292, 1662 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 297 |
| Asp718I | GGTACC | 1 cut(s) | 631 |
| AspA2I | CCTAGG | 2 cut(s) | 1091, 1834 |
| AspLEI | GCGC | 2 cut(s) | 37, 816 |
| AspS9I | GGNCC | 1 cut(s) | 123 |
| AsuC2I | CCSGG | 1 cut(s) | 126 |
| AsuHPI | GGTGA | 5 cut(s) | 127, 329, 575, 818, 860 |
| AvaI | CYCGRG | 1 cut(s) | 1001 |
| AvrII | CCTAGG | 2 cut(s) | 1091, 1834 |
| AxyI | CCTNAGG | 1 cut(s) | 1110 |
| BaeGI | GKGCMC | 2 cut(s) | 354, 1002 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 933, 966 |
| BanI | GGYRCC | 3 cut(s) | 631, 813, 1033 |
| BbsI | GAAGAC | 1 cut(s) | 1689 |
| Bbv12I | GWGCWC | 2 cut(s) | 354, 1120 |
| BbvI | GCAGC | 2 cut(s) | 1558, 1841 |
| BccI | CCATC | 9 cut(s) | 146, 188, 560, 643, 724, 833, 953, 1024, 1384 |
| BciT130I | CCWGG | 8 cut(s) | 26, 520, 544, 732, 1446, 1656, 1795, 1845 |
| BcnI | CCSGG | 1 cut(s) | 126 |
| BfaI | CTAG | 4 cut(s) | 290, 1092, 1541, 1835 |
| BfmI | CTRYAG | 5 cut(s) | 6, 355, 1566, 1698, 1770 |
| BfoI | RGCGCY | 1 cut(s) | 817 |
| BisI | GCNGC | 8 cut(s) | 38, 41, 93, 391, 1374, 1572, 1830, 1841 |
| BlnI | CCTAGG | 2 cut(s) | 1091, 1834 |
| BlsI | GCNGC | 8 cut(s) | 39, 42, 94, 392, 1375, 1573, 1831, 1842 |
| Bme1390I | CCNGG | 9 cut(s) | 26, 126, 520, 544, 732, 1446, 1656, 1795, 1845 |
| BmeT110I | CYCGRG | 1 cut(s) | 1001 |
| BmgT120I | GGNCC | 1 cut(s) | 123 |
| BmiI | GGNNCC | 5 cut(s) | 57, 525, 633, 815, 1035 |
| BmrFI | CCNGG | 9 cut(s) | 26, 126, 520, 544, 732, 1446, 1656, 1795, 1845 |
| BmsI | GCATC | 2 cut(s) | 1146, 1552 |
| BpiI | GAAGAC | 1 cut(s) | 1689 |
| BpmI | CTGGAG | 2 cut(s) | 516, 1005 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1263, 1286 |
| BpuEI | CTTGAG | 3 cut(s) | 576, 665, 1296 |
| BpuMI | CCSGG | 1 cut(s) | 126 |
| BsaAI | YACGTR | 2 cut(s) | 694, 890 |
| BsaBI | GATNNNNATC | 1 cut(s) | 156 |
| BsaHI | GRCGYC | 1 cut(s) | 814 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 189, 219, 703, 733, 1048, 1078 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 131, 152, 733, 901, 1390, 1477, 1839 |
| Bse1I | ACTGG | 2 cut(s) | 499, 1177 |
| Bse21I | CCTNAGG | 1 cut(s) | 1110 |
| Bse3DI | GCAATG | 1 cut(s) | 333 |
| Bse8I | GATNNNNATC | 1 cut(s) | 156 |
| BseBI | CCWGG | 8 cut(s) | 26, 520, 544, 732, 1446, 1656, 1795, 1845 |
| BseGI | GGATG | 6 cut(s) | 199, 370, 409, 1204, 1790, 1853 |
| BseJI | GATNNNNATC | 1 cut(s) | 156 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 131, 152, 733, 901, 1390, 1477, 1839 |
| BseMI | GCAATG | 1 cut(s) | 333 |
| BseMII | CTCAG | 1 cut(s) | 1101 |
| BseNI | ACTGG | 2 cut(s) | 499, 1177 |
| BseSI | GKGCMC | 2 cut(s) | 354, 1002 |
| BseX3I | CGGCCG | 1 cut(s) | 93 |
| BseXI | GCAGC | 2 cut(s) | 1558, 1841 |
| BseYI | CCCAGC | 1 cut(s) | 386 |
| Bsh1285I | CGRYCG | 1 cut(s) | 96 |
| BshFI | GGCC | 7 cut(s) | 95, 124, 993, 1096, 1481, 1813, 1843 |
| BshNI | GGYRCC | 3 cut(s) | 631, 813, 1033 |
| BsiEI | CGRYCG | 1 cut(s) | 96 |
| BsiHKAI | GWGCWC | 2 cut(s) | 354, 1120 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1001 |
| BsiSI | CCGG | 2 cut(s) | 96, 126 |
| BslFI | GGGAC | 1 cut(s) | 1650 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 131, 152, 733, 901, 1390, 1477, 1839 |
| BsmFI | GGGAC | 1 cut(s) | 1650 |
| BsmI | GAATGC | 1 cut(s) | 1403 |
| BsnI | GGCC | 7 cut(s) | 95, 124, 993, 1096, 1481, 1813, 1843 |
| BsoBI | CYCGRG | 1 cut(s) | 1001 |
| Bsp1286I | GDGCHC | 3 cut(s) | 354, 1002, 1120 |
| Bsp143I | GATC | 3 cut(s) | 218, 273, 1690 |
| BspACI | CCGC | 9 cut(s) | 38, 41, 92, 113, 390, 1374, 1468, 1621, 1840 |
| BspANI | GGCC | 7 cut(s) | 95, 124, 993, 1096, 1481, 1813, 1843 |
| BspCNI | CTCAG | 1 cut(s) | 1102 |
| BspHI | TCATGA | 3 cut(s) | 835, 874, 1762 |
| BspLI | GGNNCC | 5 cut(s) | 57, 525, 633, 815, 1035 |
| BspMAI | CTGCAG | 2 cut(s) | 1702, 1774 |
| BspT107I | GGYRCC | 3 cut(s) | 631, 813, 1033 |
| BsrDI | GCAATG | 1 cut(s) | 333 |
| BsrI | ACTGG | 2 cut(s) | 499, 1177 |
| BssMI | GATC | 3 cut(s) | 218, 273, 1690 |
| BssNI | GRCGYC | 1 cut(s) | 814 |
| BssT1I | CCWWGG | 3 cut(s) | 450, 1091, 1834 |
| Bst2UI | CCWGG | 8 cut(s) | 26, 520, 544, 732, 1446, 1656, 1795, 1845 |
| Bst4CI | ACNGT | 2 cut(s) | 181, 359 |
| Bst6I | CTCTTC | 4 cut(s) | 669, 876, 1035, 1317 |
| BstACI | GRCGYC | 1 cut(s) | 814 |
| BstBAI | YACGTR | 2 cut(s) | 694, 890 |
| BstC8I | GCNNGC | 4 cut(s) | 774, 1098, 1378, 1698 |
| BstDEI | CTNAG | 4 cut(s) | 1110, 1263, 1286, 1713 |
| BstF5I | GGATG | 6 cut(s) | 199, 370, 409, 1204, 1790, 1853 |
| BstH2I | RGCGCY | 1 cut(s) | 817 |
| BstHHI | GCGC | 2 cut(s) | 37, 816 |
| BstKTI | GATC | 3 cut(s) | 221, 276, 1693 |
| BstMBI | GATC | 3 cut(s) | 218, 273, 1690 |
| BstMCI | CGRYCG | 1 cut(s) | 96 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 98, 1571 |
| BstNI | CCWGG | 8 cut(s) | 26, 520, 544, 732, 1446, 1656, 1795, 1845 |
| BstNSI | RCATGY | 4 cut(s) | 257, 1062, 1380, 1454 |
| BstSCI | CCNGG | 9 cut(s) | 24, 124, 518, 542, 730, 1444, 1654, 1793, 1843 |
| BstSFI | CTRYAG | 5 cut(s) | 6, 355, 1566, 1698, 1770 |
| BstSLI | GKGCMC | 2 cut(s) | 354, 1002 |
| BstV1I | GCAGC | 2 cut(s) | 1558, 1841 |
| BstV2I | GAAGAC | 1 cut(s) | 1689 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1167 |
| BstZI | CGGCCG | 1 cut(s) | 93 |
| Bsu36I | CCTNAGG | 1 cut(s) | 1110 |
| BsuRI | GGCC | 7 cut(s) | 95, 124, 993, 1096, 1481, 1813, 1843 |
| BtsCI | GGATG | 6 cut(s) | 199, 370, 409, 1204, 1790, 1853 |
| BtsIMutI | CAGTG | 2 cut(s) | 177, 364 |
| Cac8I | GCNNGC | 4 cut(s) | 774, 1098, 1378, 1698 |
| CciI | TCATGA | 3 cut(s) | 835, 874, 1762 |
| CfoI | GCGC | 2 cut(s) | 37, 816 |
| Cfr13I | GGNCC | 1 cut(s) | 123 |
| CsiI | ACCWGGT | 1 cut(s) | 24 |
| Csp6I | GTAC | 4 cut(s) | 240, 632, 660, 1851 |
| CviAII | CATG | 9 cut(s) | 254, 836, 875, 1059, 1301, 1377, 1451, 1486, 1763 |
| CviQI | GTAC | 4 cut(s) | 240, 632, 660, 1851 |
| DdeI | CTNAG | 4 cut(s) | 1110, 1263, 1286, 1713 |
| DinI | GGCGCC | 1 cut(s) | 815 |
| DpnI | GATC | 3 cut(s) | 220, 275, 1692 |
| DpnII | GATC | 3 cut(s) | 218, 273, 1690 |
| DraI | TTTAAA | 2 cut(s) | 445, 1179 |
| EaeI | YGGCCR | 2 cut(s) | 93, 1841 |
| EagI | CGGCCG | 1 cut(s) | 93 |
| Eam1104I | CTCTTC | 4 cut(s) | 669, 876, 1035, 1317 |
| EarI | CTCTTC | 4 cut(s) | 669, 876, 1035, 1317 |
| EclXI | CGGCCG | 1 cut(s) | 93 |
| Eco130I | CCWWGG | 3 cut(s) | 450, 1091, 1834 |
| Eco147I | AGGCCT | 2 cut(s) | 993, 1096 |
| Eco52I | CGGCCG | 1 cut(s) | 93 |
| Eco57I | CTGAAG | 5 cut(s) | 132, 332, 1059, 1406, 1701 |
| Eco81I | CCTNAGG | 1 cut(s) | 1110 |
| Eco88I | CYCGRG | 1 cut(s) | 1001 |
| EcoRII | CCWGG | 8 cut(s) | 24, 518, 542, 730, 1444, 1654, 1793, 1843 |
| EcoT14I | CCWWGG | 3 cut(s) | 450, 1091, 1834 |
| EcoT22I | ATGCAT | 1 cut(s) | 1078 |
| EgeI | GGCGCC | 1 cut(s) | 815 |
| EheI | GGCGCC | 1 cut(s) | 815 |
| ErhI | CCWWGG | 3 cut(s) | 450, 1091, 1834 |
| FaeI | CATG | 9 cut(s) | 257, 839, 878, 1062, 1304, 1380, 1454, 1489, 1766 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 756, 788, 917, 949, 1505, 1537 |
| FaqI | GGGAC | 1 cut(s) | 1650 |
| FatI | CATG | 9 cut(s) | 253, 835, 874, 1058, 1300, 1376, 1450, 1485, 1762 |
| FauNDI | CATATG | 1 cut(s) | 1078 |
| Fnu4HI | GCNGC | 8 cut(s) | 38, 41, 93, 391, 1374, 1572, 1830, 1841 |
| FokI | GGATG | 5 cut(s) | 206, 377, 416, 1211, 1777 |
| Fsp4HI | GCNGC | 8 cut(s) | 38, 41, 93, 391, 1374, 1572, 1830, 1841 |
| FspBI | CTAG | 4 cut(s) | 290, 1092, 1541, 1835 |
| GlaI | GCGC | 2 cut(s) | 36, 815 |
| GluI | GCNGC | 8 cut(s) | 38, 41, 93, 391, 1374, 1572, 1830, 1841 |
| GsaI | CCCAGC | 1 cut(s) | 390 |
| GsuI | CTGGAG | 2 cut(s) | 516, 1005 |
| HaeII | RGCGCY | 1 cut(s) | 817 |
| HaeIII | GGCC | 7 cut(s) | 95, 124, 993, 1096, 1481, 1813, 1843 |
| HapII | CCGG | 2 cut(s) | 96, 126 |
| HhaI | GCGC | 2 cut(s) | 37, 816 |
| Hin1I | GRCGYC | 1 cut(s) | 814 |
| Hin1II | CATG | 9 cut(s) | 257, 839, 878, 1062, 1304, 1380, 1454, 1489, 1766 |
| Hin6I | GCGC | 2 cut(s) | 35, 814 |
| HinP1I | GCGC | 2 cut(s) | 35, 814 |
| HincII | GTYRAC | 1 cut(s) | 1551 |
| HindII | GTYRAC | 1 cut(s) | 1551 |
| HinfI | GANTC | 8 cut(s) | 137, 209, 512, 589, 1351, 1489, 1733, 1757 |
| HpaII | CCGG | 2 cut(s) | 96, 126 |
| HphI | GGTGA | 5 cut(s) | 127, 329, 575, 818, 860 |
| Hpy166II | GTNNAC | 2 cut(s) | 352, 1551 |
| Hpy188I | TCNGA | 8 cut(s) | 64, 151, 223, 628, 1365, 1669, 1738, 1753 |
| Hpy8I | GTNNAC | 2 cut(s) | 352, 1551 |
| Hpy99I | CGWCG | 2 cut(s) | 831, 1742 |
| HpyCH4III | ACNGT | 2 cut(s) | 181, 359 |
| HpyCH4IV | ACGT | 4 cut(s) | 693, 826, 889, 1686 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 98, 1571 |
| HpyF3I | CTNAG | 4 cut(s) | 1110, 1263, 1286, 1713 |
| HpySE526I | ACGT | 4 cut(s) | 693, 826, 889, 1686 |
| Hsp92I | GRCGYC | 1 cut(s) | 814 |
| Hsp92II | CATG | 9 cut(s) | 257, 839, 878, 1062, 1304, 1380, 1454, 1489, 1766 |
| HspAI | GCGC | 2 cut(s) | 35, 814 |
| KasI | GGCGCC | 1 cut(s) | 813 |
| KpnI | GGTACC | 1 cut(s) | 635 |
| Kzo9I | GATC | 3 cut(s) | 218, 273, 1690 |
| LmnI | GCTCC | 2 cut(s) | 55, 98 |
| Lsp1109I | GCAGC | 2 cut(s) | 1558, 1841 |
| LweI | GCATC | 2 cut(s) | 1146, 1552 |
| MabI | ACCWGGT | 1 cut(s) | 24 |
| MaeI | CTAG | 4 cut(s) | 290, 1092, 1541, 1835 |
| MaeII | ACGT | 4 cut(s) | 693, 826, 889, 1686 |
| MaeIII | GTNAC | 6 cut(s) | 694, 794, 806, 1054, 1356, 1517 |
| MalI | GATC | 3 cut(s) | 220, 275, 1692 |
| MboI | GATC | 3 cut(s) | 218, 273, 1690 |
| MhlI | GDGCHC | 3 cut(s) | 354, 1002, 1120 |
| Mly113I | GGCGCC | 1 cut(s) | 814 |
| MlyI | GAGTC | 2 cut(s) | 583, 1483 |
| MmeI | TCCRAC | 3 cut(s) | 326, 1654, 1761 |
| Mph1103I | ATGCAT | 1 cut(s) | 1078 |
| MroXI | GAANNNNTTC | 1 cut(s) | 297 |
| MseI | TTAA | 9 cut(s) | 444, 612, 710, 915, 1178, 1296, 1305, 1587, 1632 |
| MslI | CAYNNNNRTG | 2 cut(s) | 357, 1365 |
| MspA1I | CMGCKG | 2 cut(s) | 390, 1571 |
| MspI | CCGG | 2 cut(s) | 96, 126 |
| MspR9I | CCNGG | 9 cut(s) | 26, 126, 520, 544, 732, 1446, 1656, 1795, 1845 |
| Mva1269I | GAATGC | 1 cut(s) | 1403 |
| MvaI | CCWGG | 8 cut(s) | 26, 520, 544, 732, 1446, 1656, 1795, 1845 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 98, 1571 |
| NarI | GGCGCC | 1 cut(s) | 814 |
| NciI | CCSGG | 1 cut(s) | 126 |
| NdeI | CATATG | 1 cut(s) | 1078 |
| NdeII | GATC | 3 cut(s) | 218, 273, 1690 |
| NlaIII | CATG | 9 cut(s) | 257, 839, 878, 1062, 1304, 1380, 1454, 1489, 1766 |
| NlaIV | GGNNCC | 5 cut(s) | 57, 525, 633, 815, 1035 |
| NmeAIII | GCCGAG | 1 cut(s) | 1496 |
| NmuCI | GTSAC | 5 cut(s) | 694, 794, 806, 1054, 1517 |
| NsiI | ATGCAT | 1 cut(s) | 1078 |
| NspI | RCATGY | 4 cut(s) | 257, 1062, 1380, 1454 |
| OliI | CACNNNNGTG | 1 cut(s) | 357 |
| PaeI | GCATGC | 1 cut(s) | 1380 |
| PagI | TCATGA | 3 cut(s) | 835, 874, 1762 |
| PasI | CCCWGGG | 1 cut(s) | 519 |
| PceI | AGGCCT | 2 cut(s) | 993, 1096 |
| PciI | ACATGT | 2 cut(s) | 253, 1450 |
| PctI | GAATGC | 1 cut(s) | 1403 |
| PdmI | GAANNNNTTC | 1 cut(s) | 297 |
| PfeI | GAWTC | 6 cut(s) | 137, 209, 512, 1351, 1733, 1757 |
| PkrI | GCNGC | 8 cut(s) | 39, 42, 94, 392, 1375, 1573, 1831, 1842 |
| PleI | GAGTC | 2 cut(s) | 583, 1483 |
| PluTI | GGCGCC | 1 cut(s) | 817 |
| PpsI | GAGTC | 2 cut(s) | 583, 1483 |
| Ppu21I | YACGTR | 2 cut(s) | 694, 890 |
| PscI | ACATGT | 2 cut(s) | 253, 1450 |
| PsiI | TTATAA | 1 cut(s) | 900 |
| Psp6I | CCWGG | 8 cut(s) | 24, 518, 542, 730, 1444, 1654, 1793, 1843 |
| PspFI | CCCAGC | 1 cut(s) | 386 |
| PspGI | CCWGG | 8 cut(s) | 24, 518, 542, 730, 1444, 1654, 1793, 1843 |
| PspN4I | GGNNCC | 5 cut(s) | 57, 525, 633, 815, 1035 |
| PspPI | GGNCC | 1 cut(s) | 123 |
| PstI | CTGCAG | 2 cut(s) | 1702, 1774 |
| PvuII | CAGCTG | 1 cut(s) | 1571 |
| RsaI | GTAC | 4 cut(s) | 241, 633, 661, 1852 |
| RsaNI | GTAC | 4 cut(s) | 240, 632, 660, 1851 |
| RseI | CAYNNNNRTG | 2 cut(s) | 357, 1365 |
| SaqAI | TTAA | 9 cut(s) | 444, 612, 710, 915, 1178, 1296, 1305, 1587, 1632 |
| SatI | GCNGC | 8 cut(s) | 38, 41, 93, 391, 1374, 1572, 1830, 1841 |
| Sau3AI | GATC | 3 cut(s) | 218, 273, 1690 |
| Sau96I | GGNCC | 1 cut(s) | 123 |
| SchI | GAGTC | 2 cut(s) | 583, 1483 |
| ScrFI | CCNGG | 9 cut(s) | 26, 126, 520, 544, 732, 1446, 1656, 1795, 1845 |
| SduI | GDGCHC | 3 cut(s) | 354, 1002, 1120 |
| SexAI | ACCWGGT | 1 cut(s) | 24 |
| SfaNI | GCATC | 2 cut(s) | 1146, 1552 |
| SfcI | CTRYAG | 5 cut(s) | 6, 355, 1566, 1698, 1770 |
| SfoI | GGCGCC | 1 cut(s) | 815 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 357, 1365 |
| SmlI | CTYRAG | 3 cut(s) | 591, 644, 1311 |
| SmoI | CTYRAG | 3 cut(s) | 591, 644, 1311 |
| SphI | GCATGC | 1 cut(s) | 1380 |
| SseBI | AGGCCT | 2 cut(s) | 993, 1096 |
| SsiI | CCGC | 9 cut(s) | 38, 41, 92, 113, 390, 1374, 1468, 1621, 1840 |
| SspDI | GGCGCC | 1 cut(s) | 813 |
| SspI | AATATT | 1 cut(s) | 1335 |
| SspMI | CTAG | 4 cut(s) | 290, 1092, 1541, 1835 |
| StuI | AGGCCT | 2 cut(s) | 993, 1096 |
| StyD4I | CCNGG | 9 cut(s) | 24, 124, 518, 542, 730, 1444, 1654, 1793, 1843 |
| StyI | CCWWGG | 3 cut(s) | 450, 1091, 1834 |
| TaaI | ACNGT | 2 cut(s) | 181, 359 |
| TaiI | ACGT | 4 cut(s) | 696, 829, 892, 1689 |
| TaqI | TCGA | 4 cut(s) | 207, 250, 1137, 1503 |
| TauI | GCSGC | 6 cut(s) | 40, 43, 95, 393, 1376, 1843 |
| TfiI | GAWTC | 6 cut(s) | 137, 209, 512, 1351, 1733, 1757 |
| Tru1I | TTAA | 9 cut(s) | 444, 612, 710, 915, 1178, 1296, 1305, 1587, 1632 |
| Tru9I | TTAA | 9 cut(s) | 444, 612, 710, 915, 1178, 1296, 1305, 1587, 1632 |
| TscAI | CASTG | 2 cut(s) | 184, 364 |
| TseFI | GTSAC | 5 cut(s) | 694, 794, 806, 1054, 1517 |
| TseI | GCWGC | 2 cut(s) | 1571, 1829 |
| Tsp45I | GTSAC | 5 cut(s) | 694, 794, 806, 1054, 1517 |
| TspGWI | ACGGA | 3 cut(s) | 91, 601, 1755 |
| TspRI | CASTG | 2 cut(s) | 184, 364 |
| VneI | GTGCAC | 1 cut(s) | 350 |
| XapI | RAATTY | 4 cut(s) | 1085, 1180, 1292, 1662 |
| XceI | RCATGY | 4 cut(s) | 257, 1062, 1380, 1454 |
| XmaJI | CCTAGG | 2 cut(s) | 1091, 1834 |
| XmnI | GAANNNNTTC | 1 cut(s) | 297 |
| XspI | CTAG | 4 cut(s) | 290, 1092, 1541, 1835 |
| Zsp2I | ATGCAT | 1 cut(s) | 1078 |