Peptidyl-prolyl cis-trans isomerase
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G54010 AT3G54010 |
| fragaria_vesca | FvH4_6g12640 FvH4_6g12640 FvH4_6g12640 |
| malus_domestica | MD04G1140300.v1.1 MD12G1155600.v1.1 |
| prunus_persica | Prupe.6G265400_v2.0.a1 |
| pyrus_communis | pycom04g12790 pycom12g14770 |
| rosa_chinensis | RchiOBHm_Chr3g0464491 |
| rosa_laevigata | RLG00000024692 |
| rosa_multiflora | Rmu_sc0003074.1_g000006 |
| rosa_roxburghii | Rroxscaffold_6G00415620 |
| rosa_rugosa | Rorug03G0072600 |
| rosa_samantha | Rh3BG134800 Rh3CG137300 Rh3DG136100 |
| rosa_wichuraiana | Rw3G011020 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1175 |
| AccBSI | CCGCTC | 1 cut(s) | 1778 |
| AccI | GTMKAC | 1 cut(s) | 1538 |
| AccII | CGCG | 1 cut(s) | 23 |
| AciI | CCGC | 9 cut(s) | 18, 21, 117, 219, 540, 1456, 1766, 1776, 1793 |
| AclI | AACGTT | 1 cut(s) | 1092 |
| AcoI | YGGCCR | 1 cut(s) | 81 |
| AcsI | RAATTY | 4 cut(s) | 285, 1238, 1280, 1650 |
| AcuI | CTGAAG | 1 cut(s) | 1119 |
| AcyI | GRCGYC | 1 cut(s) | 802 |
| AfaI | GTAC | 2 cut(s) | 577, 649 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 119, 140, 721, 889, 1465, 1806 |
| AgeI | ACCGGT | 1 cut(s) | 1160 |
| AjnI | CCWGG | 5 cut(s) | 112, 530, 1024, 1432, 1642 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1493, 1525 |
| AleI | CACNNNNGTG | 1 cut(s) | 345 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 177, 209 |
| AluBI | AGCT | 6 cut(s) | 90, 371, 760, 1037, 1129, 1559 |
| AluI | AGCT | 6 cut(s) | 90, 371, 760, 1037, 1129, 1559 |
| Alw21I | GWGCWC | 2 cut(s) | 342, 1717 |
| Alw26I | GTCTC | 2 cut(s) | 777, 1397 |
| Alw44I | GTGCAC | 1 cut(s) | 338 |
| Ama87I | CYCGRG | 1 cut(s) | 579 |
| AoxI | GGCC | 6 cut(s) | 81, 979, 1082, 1467, 1809, 1884 |
| ApaLI | GTGCAC | 1 cut(s) | 338 |
| ApeKI | GCWGC | 6 cut(s) | 1021, 1361, 1478, 1559, 1579, 1688 |
| ApoI | RAATTY | 4 cut(s) | 285, 1238, 1280, 1650 |
| AseI | ATTAAT | 1 cut(s) | 1908 |
| AsiGI | ACCGGT | 1 cut(s) | 1160 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 285, 741, 1616 |
| AspLEI | GCGC | 1 cut(s) | 25 |
| AspS9I | GGNCC | 3 cut(s) | 1158, 1809, 1845 |
| AsuHPI | GGTGA | 8 cut(s) | 134, 155, 317, 359, 848, 986, 1036, 1040 |
| AsuII | TTCGAA | 1 cut(s) | 999 |
| AvaI | CYCGRG | 1 cut(s) | 579 |
| AvaII | GGWCC | 2 cut(s) | 1158, 1845 |
| AxyI | CCTNAGG | 1 cut(s) | 990 |
| BaeGI | GKGCMC | 1 cut(s) | 342 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 921, 954 |
| BanII | GRGCYC | 1 cut(s) | 1108 |
| BauI | CACGAG | 1 cut(s) | 1755 |
| BbsI | GAAGAC | 2 cut(s) | 913, 1325 |
| Bbv12I | GWGCWC | 2 cut(s) | 342, 1717 |
| BbvI | GCAGC | 6 cut(s) | 1008, 1348, 1465, 1546, 1591, 1675 |
| BceAI | ACGGC | 3 cut(s) | 232, 674, 1443 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1324, 1358 |
| BciT130I | CCWGG | 5 cut(s) | 114, 532, 1026, 1434, 1644 |
| BclI | TGATCA | 2 cut(s) | 105, 145 |
| BcoDI | GTCTC | 2 cut(s) | 777, 1397 |
| BfaI | CTAG | 2 cut(s) | 278, 1080 |
| BfmI | CTRYAG | 1 cut(s) | 1689 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1475 |
| Bme1390I | CCNGG | 5 cut(s) | 114, 532, 1026, 1434, 1644 |
| Bme18I | GGWCC | 2 cut(s) | 1158, 1845 |
| BmeT110I | CYCGRG | 1 cut(s) | 579 |
| BmgT120I | GGNCC | 3 cut(s) | 1158, 1809, 1845 |
| BmiI | GGNNCC | 3 cut(s) | 513, 1545, 1666 |
| BmrFI | CCNGG | 5 cut(s) | 114, 532, 1026, 1434, 1644 |
| BmsI | GCATC | 3 cut(s) | 1008, 1134, 1540 |
| BpiI | GAAGAC | 2 cut(s) | 913, 1325 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 774, 806 |
| BpmI | CTGGAG | 1 cut(s) | 1503 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1716 |
| Bpu14I | TTCGAA | 1 cut(s) | 999 |
| BpuEI | CTTGAG | 2 cut(s) | 318, 653 |
| BsaBI | GATNNNNATC | 1 cut(s) | 144 |
| BsaHI | GRCGYC | 1 cut(s) | 802 |
| BsaJI | CCNNGG | 8 cut(s) | 438, 506, 1148, 1251, 1432, 1459, 1643, 1828 |
| BsaWI | WCCGGW | 1 cut(s) | 1160 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 177, 207, 691, 721, 1036, 1066 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 119, 140, 721, 889, 1465, 1806 |
| Bse118I | RCCGGY | 1 cut(s) | 1160 |
| Bse1I | ACTGG | 1 cut(s) | 1900 |
| Bse21I | CCTNAGG | 1 cut(s) | 990 |
| Bse3DI | GCAATG | 1 cut(s) | 321 |
| Bse8I | GATNNNNATC | 1 cut(s) | 144 |
| BseBI | CCWGG | 5 cut(s) | 114, 532, 1026, 1434, 1644 |
| BseDI | CCNNGG | 8 cut(s) | 438, 506, 1148, 1251, 1432, 1459, 1643, 1828 |
| BseGI | GGATG | 8 cut(s) | 75, 187, 234, 358, 397, 1192, 1738, 1847 |
| BseJI | GATNNNNATC | 1 cut(s) | 144 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 119, 140, 721, 889, 1465, 1806 |
| BseMI | GCAATG | 1 cut(s) | 321 |
| BseMII | CTCAG | 2 cut(s) | 981, 1730 |
| BseNI | ACTGG | 1 cut(s) | 1900 |
| BseRI | GAGGAG | 2 cut(s) | 79, 1736 |
| BseSI | GKGCMC | 1 cut(s) | 342 |
| BseXI | GCAGC | 6 cut(s) | 1008, 1348, 1465, 1546, 1591, 1675 |
| Bsh1236I | CGCG | 1 cut(s) | 23 |
| BshFI | GGCC | 6 cut(s) | 83, 981, 1084, 1469, 1811, 1886 |
| BshTI | ACCGGT | 1 cut(s) | 1160 |
| BsiHKAI | GWGCWC | 2 cut(s) | 342, 1717 |
| BsiHKCI | CYCGRG | 1 cut(s) | 579 |
| BsiSI | CCGG | 2 cut(s) | 84, 1161 |
| BslFI | GGGAC | 1 cut(s) | 1638 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 119, 140, 721, 889, 1465, 1806 |
| BsmAI | GTCTC | 2 cut(s) | 777, 1397 |
| BsmFI | GGGAC | 1 cut(s) | 1638 |
| BsmI | GAATGC | 2 cut(s) | 1391, 1777 |
| BsnI | GGCC | 6 cut(s) | 83, 981, 1084, 1469, 1811, 1886 |
| BsoBI | CYCGRG | 1 cut(s) | 579 |
| Bsp119I | TTCGAA | 1 cut(s) | 999 |
| Bsp1286I | GDGCHC | 3 cut(s) | 342, 1108, 1717 |
| Bsp143I | GATC | 3 cut(s) | 105, 145, 206 |
| BspACI | CCGC | 9 cut(s) | 18, 21, 117, 219, 540, 1456, 1766, 1776, 1793 |
| BspANI | GGCC | 6 cut(s) | 83, 981, 1084, 1469, 1811, 1886 |
| BspCNI | CTCAG | 2 cut(s) | 982, 1729 |
| BspFNI | CGCG | 1 cut(s) | 23 |
| BspLI | GGNNCC | 3 cut(s) | 513, 1545, 1666 |
| BspMAI | CTGCAG | 1 cut(s) | 1693 |
| BspQI | GCTCTTC | 1 cut(s) | 1569 |
| BspT104I | TTCGAA | 1 cut(s) | 999 |
| BsrBI | CCGCTC | 1 cut(s) | 1778 |
| BsrDI | GCAATG | 1 cut(s) | 321 |
| BsrFI | RCCGGY | 1 cut(s) | 1160 |
| BsrI | ACTGG | 1 cut(s) | 1900 |
| BssAI | RCCGGY | 1 cut(s) | 1160 |
| BssECI | CCNNGG | 8 cut(s) | 438, 506, 1148, 1251, 1432, 1459, 1643, 1828 |
| BssMI | GATC | 3 cut(s) | 105, 145, 206 |
| BssNI | GRCGYC | 1 cut(s) | 802 |
| BssSI | CACGAG | 1 cut(s) | 1755 |
| BssT1I | CCWWGG | 4 cut(s) | 438, 1148, 1251, 1828 |
| Bst2BI | CACGAG | 1 cut(s) | 1755 |
| Bst2UI | CCWGG | 5 cut(s) | 114, 532, 1026, 1434, 1644 |
| Bst4CI | ACNGT | 2 cut(s) | 169, 1825 |
| Bst6I | CTCTTC | 3 cut(s) | 56, 864, 1569 |
| BstACI | GRCGYC | 1 cut(s) | 802 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 548, 1559 |
| BstBI | TTCGAA | 1 cut(s) | 999 |
| BstC8I | GCNNGC | 2 cut(s) | 1086, 1366 |
| BstDEI | CTNAG | 2 cut(s) | 990, 1716 |
| BstDSI | CCRYGG | 1 cut(s) | 1459 |
| BstEII | GGTNACC | 1 cut(s) | 1042 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 117 |
| BstF5I | GGATG | 8 cut(s) | 75, 187, 234, 358, 397, 1192, 1738, 1847 |
| BstFNI | CGCG | 1 cut(s) | 23 |
| BstHHI | GCGC | 1 cut(s) | 25 |
| BstKTI | GATC | 3 cut(s) | 108, 148, 209 |
| BstMAI | GTCTC | 2 cut(s) | 777, 1397 |
| BstMBI | GATC | 3 cut(s) | 105, 145, 206 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 31, 548, 1085, 1475, 1559, 1772 |
| BstNI | CCWGG | 5 cut(s) | 114, 532, 1026, 1434, 1644 |
| BstNSI | RCATGY | 3 cut(s) | 790, 1368, 1410 |
| BstPI | GGTNACC | 1 cut(s) | 1042 |
| BstSCI | CCNGG | 5 cut(s) | 112, 530, 1024, 1432, 1642 |
| BstSFI | CTRYAG | 1 cut(s) | 1689 |
| BstSLI | GKGCMC | 1 cut(s) | 342 |
| BstUI | CGCG | 1 cut(s) | 23 |
| BstV1I | GCAGC | 6 cut(s) | 1008, 1348, 1465, 1546, 1591, 1675 |
| BstV2I | GAAGAC | 2 cut(s) | 913, 1325 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1155 |
| Bsu36I | CCTNAGG | 1 cut(s) | 990 |
| BsuRI | GGCC | 6 cut(s) | 83, 981, 1084, 1469, 1811, 1886 |
| BtgI | CCRYGG | 1 cut(s) | 1459 |
| BtsCI | GGATG | 8 cut(s) | 75, 187, 234, 358, 397, 1192, 1738, 1847 |
| BtsI | GCAGTG | 1 cut(s) | 108 |
| BtsIMutI | CAGTG | 3 cut(s) | 108, 165, 1907 |
| Cac8I | GCNNGC | 2 cut(s) | 1086, 1366 |
| CfoI | GCGC | 1 cut(s) | 25 |
| Cfr10I | RCCGGY | 1 cut(s) | 1160 |
| Cfr13I | GGNCC | 3 cut(s) | 1158, 1809, 1845 |
| CseI | GACGC | 1 cut(s) | 791 |
| Csp6I | GTAC | 2 cut(s) | 576, 648 |
| CspAI | ACCGGT | 1 cut(s) | 1160 |
| CviAII | CATG | 8 cut(s) | 573, 787, 895, 1365, 1407, 1439, 1474, 1852 |
| CviQI | GTAC | 2 cut(s) | 576, 648 |
| DdeI | CTNAG | 2 cut(s) | 990, 1716 |
| DpnI | GATC | 3 cut(s) | 107, 147, 208 |
| DpnII | GATC | 3 cut(s) | 105, 145, 206 |
| DraI | TTTAAA | 1 cut(s) | 1228 |
| EaeI | YGGCCR | 1 cut(s) | 81 |
| Eam1104I | CTCTTC | 3 cut(s) | 56, 864, 1569 |
| EarI | CTCTTC | 3 cut(s) | 56, 864, 1569 |
| EciI | GGCGGA | 1 cut(s) | 132 |
| Eco130I | CCWWGG | 4 cut(s) | 438, 1148, 1251, 1828 |
| Eco147I | AGGCCT | 2 cut(s) | 981, 1084 |
| Eco24I | GRGCYC | 1 cut(s) | 1108 |
| Eco47I | GGWCC | 2 cut(s) | 1158, 1845 |
| Eco57I | CTGAAG | 1 cut(s) | 1119 |
| Eco81I | CCTNAGG | 1 cut(s) | 990 |
| Eco88I | CYCGRG | 1 cut(s) | 579 |
| Eco91I | GGTNACC | 1 cut(s) | 1042 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 117 |
| EcoO65I | GGTNACC | 1 cut(s) | 1042 |
| EcoRI | GAATTC | 1 cut(s) | 285 |
| EcoRII | CCWGG | 5 cut(s) | 112, 530, 1024, 1432, 1642 |
| EcoT14I | CCWWGG | 4 cut(s) | 438, 1148, 1251, 1828 |
| EcoT22I | ATGCAT | 1 cut(s) | 1066 |
| EcoT38I | GRGCYC | 1 cut(s) | 1108 |
| ErhI | CCWWGG | 4 cut(s) | 438, 1148, 1251, 1828 |
| FaeI | CATG | 8 cut(s) | 576, 790, 898, 1368, 1410, 1442, 1477, 1855 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 905, 937, 1493, 1525 |
| FaqI | GGGAC | 1 cut(s) | 1638 |
| FatI | CATG | 8 cut(s) | 572, 786, 894, 1364, 1406, 1438, 1473, 1851 |
| FauI | CCCGC | 2 cut(s) | 1759, 1800 |
| FauNDI | CATATG | 2 cut(s) | 517, 1066 |
| FbaI | TGATCA | 2 cut(s) | 105, 145 |
| FblI | GTMKAC | 1 cut(s) | 1538 |
| FokI | GGATG | 8 cut(s) | 82, 194, 221, 365, 404, 1199, 1745, 1854 |
| FriOI | GRGCYC | 1 cut(s) | 1108 |
| FspBI | CTAG | 2 cut(s) | 278, 1080 |
| GlaI | GCGC | 1 cut(s) | 24 |
| GsuI | CTGGAG | 1 cut(s) | 1503 |
| HaeIII | GGCC | 6 cut(s) | 83, 981, 1084, 1469, 1811, 1886 |
| HapII | CCGG | 2 cut(s) | 84, 1161 |
| HgaI | GACGC | 1 cut(s) | 791 |
| HhaI | GCGC | 1 cut(s) | 25 |
| Hin1I | GRCGYC | 1 cut(s) | 802 |
| Hin1II | CATG | 8 cut(s) | 576, 790, 898, 1368, 1410, 1442, 1477, 1855 |
| Hin6I | GCGC | 1 cut(s) | 23 |
| HinP1I | GCGC | 1 cut(s) | 23 |
| HincII | GTYRAC | 2 cut(s) | 940, 1539 |
| HindII | GTYRAC | 2 cut(s) | 940, 1539 |
| HindIII | AAGCTT | 1 cut(s) | 88 |
| HinfI | GANTC | 5 cut(s) | 125, 228, 500, 898, 1339 |
| HpaII | CCGG | 2 cut(s) | 84, 1161 |
| HphI | GGTGA | 8 cut(s) | 134, 155, 317, 359, 848, 986, 1036, 1040 |
| Hpy166II | GTNNAC | 5 cut(s) | 340, 766, 940, 1539, 1699 |
| Hpy8I | GTNNAC | 5 cut(s) | 340, 766, 940, 1539, 1699 |
| Hpy99I | CGWCG | 1 cut(s) | 1543 |
| HpyCH4III | ACNGT | 2 cut(s) | 169, 1825 |
| HpyCH4IV | ACGT | 2 cut(s) | 1092, 1290 |
| HpyCH4V | TGCA | 9 cut(s) | 298, 314, 340, 1064, 1364, 1389, 1410, 1553, 1691 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 31, 548, 1085, 1475, 1559, 1772 |
| HpyF3I | CTNAG | 2 cut(s) | 990, 1716 |
| HpySE526I | ACGT | 2 cut(s) | 1092, 1290 |
| Hsp92I | GRCGYC | 1 cut(s) | 802 |
| Hsp92II | CATG | 8 cut(s) | 576, 790, 898, 1368, 1410, 1442, 1477, 1855 |
| HspAI | GCGC | 1 cut(s) | 23 |
| Ksp22I | TGATCA | 2 cut(s) | 105, 145 |
| Kzo9I | GATC | 3 cut(s) | 105, 145, 206 |
| LguI | GCTCTTC | 1 cut(s) | 1569 |
| LmnI | GCTCC | 2 cut(s) | 376, 757 |
| Lsp1109I | GCAGC | 6 cut(s) | 1008, 1348, 1465, 1546, 1591, 1675 |
| LweI | GCATC | 3 cut(s) | 1008, 1134, 1540 |
| MaeI | CTAG | 2 cut(s) | 278, 1080 |
| MaeII | ACGT | 2 cut(s) | 1092, 1290 |
| MaeIII | GTNAC | 2 cut(s) | 1042, 1505 |
| MalI | GATC | 3 cut(s) | 107, 147, 208 |
| MbiI | CCGCTC | 1 cut(s) | 1778 |
| MboI | GATC | 3 cut(s) | 105, 145, 206 |
| MhlI | GDGCHC | 3 cut(s) | 342, 1108, 1717 |
| MluCI | AATT | 9 cut(s) | 285, 309, 642, 1238, 1280, 1616, 1650, 1861, 1909 |
| MmeI | TCCRAC | 4 cut(s) | 250, 314, 594, 1642 |
| Mph1103I | ATGCAT | 1 cut(s) | 1066 |
| MroXI | GAANNNNTTC | 3 cut(s) | 285, 741, 1616 |
| MslI | CAYNNNNRTG | 3 cut(s) | 345, 1353, 1376 |
| MspA1I | CMGCKG | 1 cut(s) | 1559 |
| MspI | CCGG | 2 cut(s) | 84, 1161 |
| MspR9I | CCNGG | 5 cut(s) | 114, 532, 1026, 1434, 1644 |
| Mva1269I | GAATGC | 2 cut(s) | 1391, 1777 |
| MvaI | CCWGG | 5 cut(s) | 114, 532, 1026, 1434, 1644 |
| MvnI | CGCG | 1 cut(s) | 23 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 31, 548, 1085, 1475, 1559, 1772 |
| NdeI | CATATG | 2 cut(s) | 517, 1066 |
| NdeII | GATC | 3 cut(s) | 105, 145, 206 |
| NlaIII | CATG | 8 cut(s) | 576, 790, 898, 1368, 1410, 1442, 1477, 1855 |
| NlaIV | GGNNCC | 3 cut(s) | 513, 1545, 1666 |
| NmuCI | GTSAC | 2 cut(s) | 1042, 1505 |
| NsiI | ATGCAT | 1 cut(s) | 1066 |
| NspI | RCATGY | 3 cut(s) | 790, 1368, 1410 |
| NspV | TTCGAA | 1 cut(s) | 999 |
| OliI | CACNNNNGTG | 1 cut(s) | 345 |
| PaeI | GCATGC | 1 cut(s) | 1368 |
| PaeR7I | CTCGAG | 1 cut(s) | 579 |
| PceI | AGGCCT | 2 cut(s) | 981, 1084 |
| PciSI | GCTCTTC | 1 cut(s) | 1569 |
| PctI | GAATGC | 2 cut(s) | 1391, 1777 |
| PdmI | GAANNNNTTC | 3 cut(s) | 285, 741, 1616 |
| PfeI | GAWTC | 5 cut(s) | 125, 228, 500, 898, 1339 |
| PinAI | ACCGGT | 1 cut(s) | 1160 |
| PshBI | ATTAAT | 1 cut(s) | 1908 |
| PsiI | TTATAA | 1 cut(s) | 1175 |
| Psp1406I | AACGTT | 1 cut(s) | 1092 |
| Psp6I | CCWGG | 5 cut(s) | 112, 530, 1024, 1432, 1642 |
| PspEI | GGTNACC | 1 cut(s) | 1042 |
| PspGI | CCWGG | 5 cut(s) | 112, 530, 1024, 1432, 1642 |
| PspN4I | GGNNCC | 3 cut(s) | 513, 1545, 1666 |
| PspPI | GGNCC | 3 cut(s) | 1158, 1809, 1845 |
| PstI | CTGCAG | 1 cut(s) | 1693 |
| PvuII | CAGCTG | 1 cut(s) | 1559 |
| RsaI | GTAC | 2 cut(s) | 577, 649 |
| RsaNI | GTAC | 2 cut(s) | 576, 648 |
| RseI | CAYNNNNRTG | 3 cut(s) | 345, 1353, 1376 |
| SalI | GTCGAC | 1 cut(s) | 1537 |
| SapI | GCTCTTC | 1 cut(s) | 1569 |
| Sau3AI | GATC | 3 cut(s) | 105, 145, 206 |
| Sau96I | GGNCC | 3 cut(s) | 1158, 1809, 1845 |
| ScrFI | CCNGG | 5 cut(s) | 114, 532, 1026, 1434, 1644 |
| SduI | GDGCHC | 3 cut(s) | 342, 1108, 1717 |
| SfaNI | GCATC | 3 cut(s) | 1008, 1134, 1540 |
| SfcI | CTRYAG | 1 cut(s) | 1689 |
| Sfr274I | CTCGAG | 1 cut(s) | 579 |
| SfuI | TTCGAA | 1 cut(s) | 999 |
| SinI | GGWCC | 2 cut(s) | 1158, 1845 |
| SlaI | CTCGAG | 1 cut(s) | 579 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 345, 1353, 1376 |
| SmlI | CTYRAG | 3 cut(s) | 333, 579, 632 |
| SmoI | CTYRAG | 3 cut(s) | 333, 579, 632 |
| SphI | GCATGC | 1 cut(s) | 1368 |
| Sse9I | AATT | 9 cut(s) | 285, 309, 642, 1238, 1280, 1616, 1650, 1861, 1909 |
| SseBI | AGGCCT | 2 cut(s) | 981, 1084 |
| SsiI | CCGC | 9 cut(s) | 18, 21, 117, 219, 540, 1456, 1766, 1776, 1793 |
| SspMI | CTAG | 2 cut(s) | 278, 1080 |
| StuI | AGGCCT | 2 cut(s) | 981, 1084 |
| StyD4I | CCNGG | 5 cut(s) | 112, 530, 1024, 1432, 1642 |
| StyI | CCWWGG | 4 cut(s) | 438, 1148, 1251, 1828 |
| TaaI | ACNGT | 2 cut(s) | 169, 1825 |
| TaiI | ACGT | 2 cut(s) | 1095, 1293 |
| TaqI | TCGA | 6 cut(s) | 128, 580, 781, 999, 1125, 1538 |
| TasI | AATT | 9 cut(s) | 285, 309, 642, 1238, 1280, 1616, 1650, 1861, 1909 |
| TatI | WGTACW | 1 cut(s) | 575 |
| TauI | GCSGC | 4 cut(s) | 20, 23, 222, 1778 |
| TfiI | GAWTC | 5 cut(s) | 125, 228, 500, 898, 1339 |
| TscAI | CASTG | 3 cut(s) | 108, 172, 1907 |
| TseFI | GTSAC | 2 cut(s) | 1042, 1505 |
| TseI | GCWGC | 6 cut(s) | 1021, 1361, 1478, 1559, 1579, 1688 |
| Tsp45I | GTSAC | 2 cut(s) | 1042, 1505 |
| TspGWI | ACGGA | 3 cut(s) | 1556, 1624, 1849 |
| TspRI | CASTG | 3 cut(s) | 108, 172, 1907 |
| VneI | GTGCAC | 1 cut(s) | 338 |
| VpaK11BI | GGWCC | 2 cut(s) | 1158, 1845 |
| VspI | ATTAAT | 1 cut(s) | 1908 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 117 |
| XapI | RAATTY | 4 cut(s) | 285, 1238, 1280, 1650 |
| XceI | RCATGY | 3 cut(s) | 790, 1368, 1410 |
| XhoI | CTCGAG | 1 cut(s) | 579 |
| XmiI | GTMKAC | 1 cut(s) | 1538 |
| XmnI | GAANNNNTTC | 3 cut(s) | 285, 741, 1616 |
| XspI | CTAG | 2 cut(s) | 278, 1080 |
| Zsp2I | ATGCAT | 1 cut(s) | 1066 |