Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0007723

Physical Location & Seq

Genomic Coordinates Reverse (-)

20108207 .. 20110883

Gene Structure 2677 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G54300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAGTCAAAAGGGTTTGATATATAGCTTTGTTGCTAAAGGAACAGTTGTTCTAGCAGAGCATACTCCTTATTCAGGAAACTTTAGCACCATTGCTGTTCAATGTCTGCAGAAGCTACCCACAAATAGCAGCAAGTATACTTACTCTTGCGATGGTCATACTTTCAATTTCCTTGTTGACAATGGCTTTGTGTTTCTAGTGGTTGCTGATGAGTCCACCGGAAGAAGTGTTCCTTTCGTGTTTCTCGAACGGGTCAAGGAAGACTTTAAGAAGCGGTATGAAGCGAGTATAAAGAATGATGAGCGACATCCTCTTGCGGATGAGGACGAAGATGATGATTTGTTTGGAGATCGGTTTAGCGTTGCATACAATCTTGACAGGGAGTTCGGGCCCATACTAAAGGAGCATATGCAGTATTGTATGAGCCATCCAGAAGAGATGAGCAAACTTTCTAAGTTGAAGGCCCAAATAACTGAGGTCAAGGGGATCATGATGGACAACATTGAGAAGGTTCTGGACAGAGGAGAGAAGATCGAACTTCTGGTTGACAAAACCGAGAACCTACAGTTCCAGGCAGATAGCTTCCAGAGACAAGGAAGGCAGTTAAGAAGGAAGATGTGGCTACAGAGTCTGCAGATGAAGCTGATGGTGGCTGGTGCTGTTTTCTCTTTTATTCTCATCGTTTGGGTTGTTGCTTGTGGAGGTTTCAAATGCTCATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006887 GO:0006906 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0033263 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin MMtag Synaptobrevin

Protein Analysis

240

Amino Acids

27.46

Weight (kDa)

6.0

Isoelectric Point (pI)

41.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 100	7.8e-20	Regulated-SNARE-like domain
Synaptobrevin	PF00957	149 - 229	8.7e-29	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54300 AT3G54300 AT3G54300
fragaria_vesca	FvH4_7g05140
malus_domestica	MD02G1261900.v1.1 MD07G1058500.v1.1
prunus_persica	Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1
pyrus_communis	pycom02g22390 pycom07g04470
rosa_chinensis	RchiOBHm_Chr1g0331711
rosa_laevigata	RLG00000029720
rosa_multiflora	Rmu_sc0005044.1_g000001 Rmu_sc0034229.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318860
rosa_rugosa	Rorug01G0095900 Rorug01G0095900
rosa_samantha	Rh1AG119500 Rh1BG091100 Rh1CG114600 Rh1DG125000
rosa_wichuraiana	Rw1G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	137
AciI	CCGC	2 cut(s)	274, 317
AclWI	GGATC	1 cut(s)	494
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	4 cut(s)	101, 166, 460, 709
AjnI	CCWGG	1 cut(s)	570
AloI	GAACNNNNNNTCC	4 cut(s)	33, 65, 213, 245
AluBI	AGCT	4 cut(s)	27, 115, 582, 643
AluI	AGCT	4 cut(s)	27, 115, 582, 643
Alw26I	GTCTC	1 cut(s)	583
AlwI	GGATC	1 cut(s)	494
AlwNI	CAGNNNCTG	1 cut(s)	631
AoxI	GGCC	2 cut(s)	389, 462
ApaI	GGGCCC	1 cut(s)	393
ApeKI	GCWGC	1 cut(s)	129
ArsI	GACNNNNNNTTYG	4 cut(s)	170, 202, 368, 400
AspS9I	GGNCC	3 cut(s)	389, 390, 463
BaeGI	GKGCMC	1 cut(s)	393
BanII	GRGCYC	1 cut(s)	393
BbsI	GAAGAC	1 cut(s)	267
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	4 cut(s)	146, 435, 487, 640
BciT130I	CCWGG	1 cut(s)	572
BcoDI	GTCTC	1 cut(s)	583
BfaI	CTAG	2 cut(s)	53, 197
BfmI	CTRYAG	4 cut(s)	107, 563, 623, 632
BisI	GCNGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	131
Bme1390I	CCNGG	1 cut(s)	572
BmgT120I	GGNCC	3 cut(s)	389, 390, 463
BmiI	GGNNCC	1 cut(s)	391
BmrFI	CCNGG	1 cut(s)	572
BpiI	GAAGAC	1 cut(s)	267
BsaWI	WCCGGW	1 cut(s)	218
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
Bse3DI	GCAATG	1 cut(s)	90
BseBI	CCWGG	1 cut(s)	572
BseGI	GGATG	3 cut(s)	307, 325, 427
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	90
BseMII	CTCAG	1 cut(s)	465
BseRI	GAGGAG	1 cut(s)	537
BseSI	GKGCMC	1 cut(s)	393
BseXI	GCAGC	1 cut(s)	141
BshFI	GGCC	2 cut(s)	391, 464
BsiSI	CCGG	1 cut(s)	219
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmAI	GTCTC	1 cut(s)	583
BsnI	GGCC	2 cut(s)	391, 464
Bsp120I	GGGCCC	1 cut(s)	389
Bsp1286I	GDGCHC	1 cut(s)	393
Bsp143I	GATC	3 cut(s)	349, 486, 531
BspACI	CCGC	2 cut(s)	274, 317
BspANI	GGCC	2 cut(s)	391, 464
BspCNI	CTCAG	1 cut(s)	466
BspHI	TCATGA	2 cut(s)	489, 719
BspLI	GGNNCC	1 cut(s)	391
BspMAI	CTGCAG	2 cut(s)	111, 636
BspPI	GGATC	1 cut(s)	494
BsrDI	GCAATG	1 cut(s)	90
BssMI	GATC	3 cut(s)	349, 486, 531
BssNAI	GTATAC	1 cut(s)	138
Bst1107I	GTATAC	1 cut(s)	138
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	2 cut(s)	46, 567
Bst6I	CTCTTC	1 cut(s)	429
BstDEI	CTNAG	2 cut(s)	453, 474
BstENI	CCTNNNNNAGG	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	307, 325, 427
BstKTI	GATC	3 cut(s)	352, 489, 534
BstMAI	GTCTC	1 cut(s)	583
BstMBI	GATC	3 cut(s)	349, 486, 531
BstMWI	GCNNNNNNNGC	1 cut(s)	640
BstNI	CCWGG	1 cut(s)	572
BstSCI	CCNGG	1 cut(s)	570
BstSFI	CTRYAG	4 cut(s)	107, 563, 623, 632
BstSLI	GKGCMC	1 cut(s)	393
BstV1I	GCAGC	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	267
BstZ17I	GTATAC	1 cut(s)	138
BsuRI	GGCC	2 cut(s)	391, 464
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	3 cut(s)	307, 325, 427
CaiI	CAGNNNCTG	1 cut(s)	631
CciI	TCATGA	2 cut(s)	489, 719
Cfr13I	GGNCC	3 cut(s)	389, 390, 463
CviAII	CATG	2 cut(s)	490, 720
DdeI	CTNAG	2 cut(s)	453, 474
DpnI	GATC	3 cut(s)	351, 488, 533
DpnII	GATC	3 cut(s)	349, 486, 531
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	393
EcoNI	CCTNNNNNAGG	1 cut(s)	72
EcoRII	CCWGG	1 cut(s)	570
EcoT38I	GRGCYC	1 cut(s)	393
FaeI	CATG	2 cut(s)	493, 723
FalI	AAGNNNNNCTT	4 cut(s)	217, 249, 248, 280
FatI	CATG	2 cut(s)	489, 719
FauNDI	CATATG	1 cut(s)	408
FblI	GTMKAC	1 cut(s)	137
Fnu4HI	GCNGC	1 cut(s)	130
FokI	GGATG	3 cut(s)	294, 332, 414
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	1 cut(s)	130
FspBI	CTAG	2 cut(s)	53, 197
GluI	GCNGC	1 cut(s)	130
HaeIII	GGCC	2 cut(s)	391, 464
HapII	CCGG	1 cut(s)	219
Hin1II	CATG	2 cut(s)	493, 723
HincII	GTYRAC	2 cut(s)	178, 547
HindII	GTYRAC	2 cut(s)	178, 547
HinfI	GANTC	3 cut(s)	4, 212, 628
HpaII	CCGG	1 cut(s)	219
Hpy166II	GTNNAC	4 cut(s)	138, 178, 216, 547
Hpy188III	TCNNGA	8 cut(s)	75, 245, 374, 431, 490, 515, 586, 720
Hpy8I	GTNNAC	4 cut(s)	138, 178, 216, 547
HpyAV	CCTTC	4 cut(s)	454, 502, 591, 603
HpyCH4III	ACNGT	2 cut(s)	46, 567
HpyCH4V	TGCA	4 cut(s)	109, 365, 412, 634
HpyF10VI	GCNNNNNNNGC	1 cut(s)	640
HpyF3I	CTNAG	2 cut(s)	453, 474
Hsp92II	CATG	2 cut(s)	493, 723
Kzo9I	GATC	3 cut(s)	349, 486, 531
LmnI	GCTCC	1 cut(s)	403
Lsp1109I	GCAGC	1 cut(s)	141
MaeI	CTAG	2 cut(s)	53, 197
MalI	GATC	3 cut(s)	351, 488, 533
MboI	GATC	3 cut(s)	349, 486, 531
MboII	GAAGA	6 cut(s)	234, 272, 341, 446, 541, 625
MhlI	GDGCHC	1 cut(s)	393
MluCI	AATT	1 cut(s)	166
MlyI	GAGTC	3 cut(s)	13, 221, 637
MnlI	CCTC	5 cut(s)	316, 321, 469, 515, 695
MseI	TTAA	2 cut(s)	267, 605
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	1 cut(s)	572
MvaI	CCWGG	1 cut(s)	572
MwoI	GCNNNNNNNGC	1 cut(s)	640
NdeI	CATATG	1 cut(s)	408
NdeII	GATC	3 cut(s)	349, 486, 531
NlaIII	CATG	2 cut(s)	493, 723
NlaIV	GGNNCC	1 cut(s)	391
PagI	TCATGA	2 cut(s)	489, 719
PcsI	WCGNNNNNNNCGW	1 cut(s)	243
PkrI	GCNGC	1 cut(s)	131
PleI	GAGTC	3 cut(s)	12, 220, 636
PpsI	GAGTC	3 cut(s)	12, 220, 636
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspN4I	GGNNCC	1 cut(s)	391
PspOMI	GGGCCC	1 cut(s)	389
PspPI	GGNCC	3 cut(s)	389, 390, 463
PstI	CTGCAG	2 cut(s)	111, 636
PstNI	CAGNNNCTG	1 cut(s)	631
SaqAI	TTAA	2 cut(s)	267, 605
SatI	GCNGC	1 cut(s)	130
Sau3AI	GATC	3 cut(s)	349, 486, 531
Sau96I	GGNCC	3 cut(s)	389, 390, 463
SchI	GAGTC	3 cut(s)	13, 221, 637
ScrFI	CCNGG	1 cut(s)	572
SduI	GDGCHC	1 cut(s)	393
SetI	ASST	8 cut(s)	29, 117, 480, 513, 564, 584, 645, 706
SfcI	CTRYAG	4 cut(s)	107, 563, 623, 632
Sse9I	AATT	1 cut(s)	166
SsiI	CCGC	2 cut(s)	274, 317
SspMI	CTAG	2 cut(s)	53, 197
StyD4I	CCNGG	1 cut(s)	570
TaaI	ACNGT	2 cut(s)	46, 567
TaqI	TCGA	2 cut(s)	246, 534
TasI	AATT	1 cut(s)	166
Tru1I	TTAA	2 cut(s)	267, 605
Tru9I	TTAA	2 cut(s)	267, 605
TseI	GCWGC	1 cut(s)	129
TspDTI	ATGAA	2 cut(s)	294, 653
XagI	CCTNNNNNAGG	1 cut(s)	72
XmiI	GTMKAC	1 cut(s)	137
XspI	CTAG	2 cut(s)	53, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.