Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0007723

Physical Location & Seq

Genomic Coordinates Reverse (-)

31613890 .. 31617623

Gene Structure 3734 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1261900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGTCACAGAGGATTAATATATAGCTTTGTTGCAAAAGGAAGTGTTGTTTTAGCAGAACACACGTCCTTCTCCGGAAACTTTAGTACTCTTGCTGTTCAGTGCTTACAGAAGCTACCTTCCAGTAACAGCAAGTACACCTACTCGTGTGACGGCCACACTTTTAACTTCCTACTTGACAGTGGATTTGTGTTTCTTGTTGTTGCTGATGAATCTGCCGGGAGGACTGTACCGTTTGTGTTCCTTGAACGAGTGAAAGAGGATTTCAAGCATCGGTATGGTCCAGATATTAAGAATGCAGGGTCACATCCTCTTGCTGATGGTGACGAAGACGATGACTTATTTGAAGATCGTTTTAGCATTGCATACAATCTTGACAGAGAATTTGGGCCAAGGCTTAAGGAGCACATGCAATATTGCATGGAGCATCCAGAAGAAATAAGTAAGCTTTCCAAATTGAAGGCCCAAATCACGGAGGTCAAAGGTGTGATGATGGACAATATTGAGAAGGTTTTGGATCGTGGGGAGAGAATTGAACTTTTGGTTGATAAAACAGAAAATCTGCAGTTCCAGGCTGACAGCTTCCAGAGGCAAGGCAGGCAATTGCGACGTAAGATGTGGCTGCAGAGTCTCCAAATGAAGCTAATGATTGGAGGTGGAGTCCTTATCCTGATCATCGTACTATGGCTTATTGCCTGCGGAGGTTTCAAATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006887 GO:0006906 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0033263 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin MMtag Synaptobrevin

Protein Analysis

239

Amino Acids

27.11

Weight (kDa)

6.18

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 100	2.4e-19	Regulated-SNARE-like domain
Synaptobrevin	PF00957	149 - 229	1.6e-29	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54300 AT3G54300 AT3G54300
fragaria_vesca	FvH4_7g05140
malus_domestica	MD02G1261900.v1.1 MD07G1058500.v1.1
prunus_persica	Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1
pyrus_communis	pycom02g22390 pycom07g04470
rosa_chinensis	RchiOBHm_Chr1g0331711
rosa_laevigata	RLG00000029720
rosa_multiflora	Rmu_sc0005044.1_g000001 Rmu_sc0034229.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318860
rosa_rugosa	Rorug01G0095900 Rorug01G0095900
rosa_samantha	Rh1AG119500 Rh1BG091100 Rh1CG114600 Rh1DG125000
rosa_wichuraiana	Rw1G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	1 cut(s)	699
AclWI	GGATC	1 cut(s)	525
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	383
AfaI	GTAC	4 cut(s)	88, 137, 231, 681
AfiI	CCNNNNNNNGG	1 cut(s)	472
AflII	CTTAAG	1 cut(s)	398
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	6 cut(s)	248, 268, 347, 460, 536, 709
AjiI	CACGTC	1 cut(s)	66
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	5 cut(s)	27, 115, 448, 582, 643
AluI	AGCT	5 cut(s)	27, 115, 448, 582, 643
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	1 cut(s)	525
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	3 cut(s)	154, 389, 462
ApeKI	GCWGC	1 cut(s)	622
ApoI	RAATTY	1 cut(s)	383
ArsI	GACNNNNNNTTYG	4 cut(s)	170, 202, 368, 400
AseI	ATTAAT	1 cut(s)	17
AspS9I	GGNCC	3 cut(s)	281, 389, 463
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	281
BauI	CACGAG	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	1 cut(s)	609
BccI	CCATC	2 cut(s)	314, 487
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	572
BclI	TGATCA	1 cut(s)	672
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	635
BfmI	CTRYAG	2 cut(s)	563, 623
BfrI	CTTAAG	1 cut(s)	398
BisI	GCNGC	1 cut(s)	623
BlsI	GCNGC	1 cut(s)	624
BmcAI	AGTACT	1 cut(s)	88
Bme1390I	CCNGG	2 cut(s)	220, 572
Bme18I	GGWCC	1 cut(s)	281
BmgBI	CACGTC	1 cut(s)	66
BmgT120I	GGNCC	3 cut(s)	281, 389, 463
BmrFI	CCNGG	2 cut(s)	220, 572
BmsI	GCATC	2 cut(s)	280, 436
BpiI	GAAGAC	1 cut(s)	336
BpuMI	CCSGG	1 cut(s)	220
BsaJI	CCNNGG	1 cut(s)	392
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	645, 675
Bsc4I	CCNNNNNNNGG	1 cut(s)	472
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	1 cut(s)	360
BseAI	TCCGGA	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	572
BseDI	CCNNGG	1 cut(s)	392
BseGI	GGATG	2 cut(s)	307, 427
BseLI	CCNNNNNNNGG	1 cut(s)	472
BseMI	GCAATG	1 cut(s)	360
BseNI	ACTGG	1 cut(s)	123
BseXI	GCAGC	1 cut(s)	609
BshFI	GGCC	3 cut(s)	156, 391, 464
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	2 cut(s)	75, 219
BslI	CCNNNNNNNGG	1 cut(s)	472
BsmAI	GTCTC	1 cut(s)	635
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	3 cut(s)	156, 391, 464
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	3 cut(s)	349, 517, 672
BspACI	CCGC	1 cut(s)	699
BspANI	GGCC	3 cut(s)	156, 391, 464
BspEI	TCCGGA	1 cut(s)	74
BspMAI	CTGCAG	2 cut(s)	567, 627
BspPI	GGATC	1 cut(s)	525
BspTI	CTTAAG	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	1 cut(s)	123
BssECI	CCNNGG	1 cut(s)	392
BssMI	GATC	3 cut(s)	349, 517, 672
BssSI	CACGAG	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	392
Bst2BI	CACGAG	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	3 cut(s)	182, 229, 234
BstAFI	CTTAAG	1 cut(s)	398
BstC8I	GCNNGC	2 cut(s)	599, 697
BstF5I	GGATG	2 cut(s)	307, 427
BstKTI	GATC	3 cut(s)	352, 520, 675
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	3 cut(s)	349, 517, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	403, 598
BstNI	CCWGG	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	2 cut(s)	218, 570
BstSFI	CTRYAG	2 cut(s)	563, 623
BstV1I	GCAGC	1 cut(s)	609
BstV2I	GAAGAC	1 cut(s)	336
BsuRI	GGCC	3 cut(s)	156, 391, 464
BtrI	CACGTC	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	307, 427
BtsIMutI	CAGTG	2 cut(s)	107, 187
Cac8I	GCNNGC	2 cut(s)	599, 697
Cfr13I	GGNCC	3 cut(s)	281, 389, 463
Csp6I	GTAC	4 cut(s)	87, 136, 230, 680
CviAII	CATG	2 cut(s)	409, 421
CviQI	GTAC	4 cut(s)	87, 136, 230, 680
DpnI	GATC	3 cut(s)	351, 519, 674
DpnII	GATC	3 cut(s)	349, 517, 672
EaeI	YGGCCR	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	392
Eco47I	GGWCC	1 cut(s)	281
EcoRII	CCWGG	1 cut(s)	570
EcoT14I	CCWWGG	1 cut(s)	392
ErhI	CCWWGG	1 cut(s)	392
FaeI	CATG	2 cut(s)	412, 424
FaiI	YATR	7 cut(s)	22, 24, 279, 367, 410, 422, 685
FatI	CATG	2 cut(s)	408, 420
FbaI	TGATCA	1 cut(s)	672
Fnu4HI	GCNGC	1 cut(s)	623
FokI	GGATG	2 cut(s)	294, 414
Fsp4HI	GCNGC	1 cut(s)	623
GluI	GCNGC	1 cut(s)	623
HaeIII	GGCC	3 cut(s)	156, 391, 464
HapII	CCGG	2 cut(s)	75, 219
Hin1II	CATG	2 cut(s)	412, 424
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	4 cut(s)	4, 212, 628, 660
HpaII	CCGG	2 cut(s)	75, 219
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	138
Hpy188III	TCNNGA	6 cut(s)	75, 284, 374, 431, 586, 670
Hpy8I	GTNNAC	1 cut(s)	138
Hpy99I	CGWCG	1 cut(s)	612
HpyAV	CCTTC	4 cut(s)	79, 129, 454, 502
HpyCH4III	ACNGT	3 cut(s)	182, 229, 234
HpyCH4IV	ACGT	2 cut(s)	65, 610
HpyCH4V	TGCA	7 cut(s)	35, 299, 365, 412, 420, 565, 625
HpyF10VI	GCNNNNNNNGC	2 cut(s)	403, 598
HpySE526I	ACGT	2 cut(s)	65, 610
Hsp92II	CATG	2 cut(s)	412, 424
Kpn2I	TCCGGA	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	3 cut(s)	349, 517, 672
LmnI	GCTCC	2 cut(s)	403, 424
Lsp1109I	GCAGC	1 cut(s)	609
LweI	GCATC	2 cut(s)	280, 436
MaeII	ACGT	2 cut(s)	65, 610
MaeIII	GTNAC	5 cut(s)	5, 125, 149, 303, 323
MalI	GATC	3 cut(s)	351, 519, 674
MboI	GATC	3 cut(s)	349, 517, 672
MboII	GAAGA	3 cut(s)	341, 359, 446
MfeI	CAATTG	1 cut(s)	602
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	4 cut(s)	383, 455, 531, 602
MlyI	GAGTC	3 cut(s)	13, 637, 669
MnlI	CCTC	8 cut(s)	5, 216, 253, 321, 469, 582, 647, 695
MroI	TCCGGA	1 cut(s)	74
MseI	TTAA	5 cut(s)	17, 165, 291, 399, 715
MslI	CAYNNNNRTG	1 cut(s)	276
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	2 cut(s)	75, 219
MspR9I	CCNGG	2 cut(s)	220, 572
MunI	CAATTG	1 cut(s)	602
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	1 cut(s)	572
MwoI	GCNNNNNNNGC	2 cut(s)	403, 598
NciI	CCSGG	1 cut(s)	220
NdeII	GATC	3 cut(s)	349, 517, 672
NlaIII	CATG	2 cut(s)	412, 424
NmuCI	GTSAC	4 cut(s)	5, 149, 303, 323
NspI	RCATGY	1 cut(s)	412
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	1 cut(s)	624
PleI	GAGTC	3 cut(s)	12, 636, 668
PpsI	GAGTC	3 cut(s)	12, 636, 668
PshBI	ATTAAT	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspPI	GGNCC	3 cut(s)	281, 389, 463
PstI	CTGCAG	2 cut(s)	567, 627
RsaI	GTAC	4 cut(s)	88, 137, 231, 681
RsaNI	GTAC	4 cut(s)	87, 136, 230, 680
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	5 cut(s)	17, 165, 291, 399, 715
SatI	GCNGC	1 cut(s)	623
Sau3AI	GATC	3 cut(s)	349, 517, 672
Sau96I	GGNCC	3 cut(s)	281, 389, 463
ScaI	AGTACT	1 cut(s)	88
SchI	GAGTC	3 cut(s)	13, 637, 669
ScrFI	CCNGG	2 cut(s)	220, 572
SduI	GDGCHC	1 cut(s)	408
SfaNI	GCATC	2 cut(s)	280, 436
SfcI	CTRYAG	2 cut(s)	563, 623
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	4 cut(s)	383, 455, 531, 602
SsiI	CCGC	1 cut(s)	699
SspI	AATATT	2 cut(s)	416, 502
StyD4I	CCNGG	2 cut(s)	218, 570
StyI	CCWWGG	1 cut(s)	392
TaaI	ACNGT	3 cut(s)	182, 229, 234
TaiI	ACGT	2 cut(s)	68, 613
TasI	AATT	4 cut(s)	383, 455, 531, 602
TatI	WGTACW	2 cut(s)	86, 135
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	5 cut(s)	17, 165, 291, 399, 715
Tru9I	TTAA	5 cut(s)	17, 165, 291, 399, 715
TscAI	CASTG	2 cut(s)	107, 187
TseFI	GTSAC	4 cut(s)	5, 149, 303, 323
TseI	GCWGC	1 cut(s)	622
Tsp45I	GTSAC	4 cut(s)	5, 149, 303, 323
TspDTI	ATGAA	2 cut(s)	225, 653
TspGWI	ACGGA	1 cut(s)	488
TspRI	CASTG	2 cut(s)	107, 187
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	281
VspI	ATTAAT	1 cut(s)	17
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	1 cut(s)	412
ZrmI	AGTACT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.