Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0007723

Physical Location & Seq

Genomic Coordinates Reverse (-)

5513238 .. 5516201

Gene Structure 2964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g05140.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGAGTCATAAAGGATTGATATATAGCTTCGTTGCCAAAGGAAGTGTTGTCTTAGCAGAGCACACCTCCTTCTCCGGAAACTTCAGCACCATTGCTGTTCAATGCTTACAGAAGCTCCCTTCCAGTACCACCAAGTCCACCTACTCGTGTGATGGCCACACATTTAACTTCCTCCTTGATAATGGGTTTGTTTTTCTGGTTGTTGCGGATGAATCGGTTGGCAGGAGTGTCCCCTTTGTTTTCCTTGAACGAGTAAAAGCTGATTTTATGCAGCGTTATGCTCCAAGTATTAAAAATGAAGGTCCACATCCGCTCGCTGATGAAGATGAAGATGATGCCTTATTTGAAGACCGATTTAGCATTGCATACAATCTGGACAGAGAATTCGGGCCAAAGCTTAAGGAGCACATGCAATACTGCATGGAGCACCCAGAAGAAATGAGTAAACTTTCCAAACTAAAGGCTCAAATCACAGAGGTCAAAGGCGTTATGATGGACAATATTGAGAAGGTTTTGGATCGTGGGGAGAAAATTGAACTTCTGGTGGACAAATCTGAAAATCTGCAGTTCCAAGCTGACAGCTTCCAGAGGCAAGGAAGGCAATTGCGACGCAAGATGTGGCTGCAGAGTCTCCAAATGAAGCTACTGATAGGAGGAGGAATCTTTGTTCTGATCATCATACTATGGCTTATTGCCTGTGGAGGTTTCAAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006887 GO:0006906 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0033263 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

239

Amino Acids

27.05

Weight (kDa)

6.09

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	32 - 103	1.7e-19	Regulated-SNARE-like domain
Synaptobrevin	PF00957	149 - 229	7.2e-29	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54300 AT3G54300 AT3G54300
fragaria_vesca	FvH4_7g05140
malus_domestica	MD02G1261900.v1.1 MD07G1058500.v1.1
prunus_persica	Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1
pyrus_communis	pycom02g22390 pycom07g04470
rosa_chinensis	RchiOBHm_Chr1g0331711
rosa_laevigata	RLG00000029720
rosa_multiflora	Rmu_sc0005044.1_g000001 Rmu_sc0034229.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318860
rosa_rugosa	Rorug01G0095900 Rorug01G0095900
rosa_samantha	Rh1AG119500 Rh1BG091100 Rh1CG114600 Rh1DG125000
rosa_wichuraiana	Rw1G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	313
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	2 cut(s)	206, 311
AclWI	GGATC	1 cut(s)	525
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	67
AfaI	GTAC	1 cut(s)	127
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	5 cut(s)	101, 248, 347, 536, 709
AloI	GAACNNNNNNTCC	2 cut(s)	651, 683
AluBI	AGCT	7 cut(s)	27, 115, 260, 397, 575, 582, 643
AluI	AGCT	7 cut(s)	27, 115, 260, 397, 575, 582, 643
Alw21I	GWGCWC	3 cut(s)	63, 408, 429
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	1 cut(s)	525
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	2 cut(s)	154, 389
ApeKI	GCWGC	2 cut(s)	271, 622
ApoI	RAATTY	1 cut(s)	383
ArsI	GACNNNNNNTTYG	2 cut(s)	368, 400
AspS9I	GGNCC	2 cut(s)	302, 389
AvaII	GGWCC	1 cut(s)	302
BalI	TGGCCA	1 cut(s)	156
BauI	CACGAG	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	354
Bbv12I	GWGCWC	3 cut(s)	63, 408, 429
BbvI	GCAGC	2 cut(s)	283, 609
BccI	CCATC	2 cut(s)	146, 487
BclI	TGATCA	1 cut(s)	672
BcoDI	GTCTC	1 cut(s)	635
BfmI	CTRYAG	2 cut(s)	563, 623
BfrI	CTTAAG	1 cut(s)	398
BisI	GCNGC	2 cut(s)	272, 623
BlsI	GCNGC	2 cut(s)	273, 624
Bme18I	GGWCC	1 cut(s)	302
BmgT120I	GGNCC	2 cut(s)	302, 389
BmsI	GCATC	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	354
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bse1I	ACTGG	1 cut(s)	123
Bse3DI	GCAATG	2 cut(s)	90, 360
BseAI	TCCGGA	1 cut(s)	74
BseGI	GGATG	2 cut(s)	214, 307
BseMI	GCAATG	2 cut(s)	90, 360
BseNI	ACTGG	1 cut(s)	123
BseRI	GAGGAG	1 cut(s)	669
BseXI	GCAGC	2 cut(s)	283, 609
BshFI	GGCC	2 cut(s)	156, 391
BsiHKAI	GWGCWC	3 cut(s)	63, 408, 429
BsiSI	CCGG	1 cut(s)	75
BslFI	GGGAC	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	635
BsmFI	GGGAC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	156, 391
Bsp1286I	GDGCHC	3 cut(s)	63, 408, 429
Bsp13I	TCCGGA	1 cut(s)	74
Bsp143I	GATC	2 cut(s)	517, 672
BspACI	CCGC	2 cut(s)	206, 311
BspANI	GGCC	2 cut(s)	156, 391
BspEI	TCCGGA	1 cut(s)	74
BspMAI	CTGCAG	2 cut(s)	567, 627
BspPI	GGATC	1 cut(s)	525
BspTI	CTTAAG	1 cut(s)	398
BsrBI	CCGCTC	1 cut(s)	313
BsrDI	GCAATG	2 cut(s)	90, 360
BsrI	ACTGG	1 cut(s)	123
BssMI	GATC	2 cut(s)	517, 672
BssSI	CACGAG	1 cut(s)	145
Bst2BI	CACGAG	1 cut(s)	145
BstAFI	CTTAAG	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	52
BstF5I	GGATG	2 cut(s)	214, 307
BstKTI	GATC	2 cut(s)	520, 675
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	2 cut(s)	517, 672
BstMWI	GCNNNNNNNGC	2 cut(s)	403, 598
BstNSI	RCATGY	1 cut(s)	412
BstSFI	CTRYAG	2 cut(s)	563, 623
BstV1I	GCAGC	2 cut(s)	283, 609
BstV2I	GAAGAC	1 cut(s)	354
BsuRI	GGCC	2 cut(s)	156, 391
BtsCI	GGATG	2 cut(s)	214, 307
Cac8I	GCNNGC	1 cut(s)	315
Cfr13I	GGNCC	2 cut(s)	302, 389
CseI	GACGC	1 cut(s)	618
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	2 cut(s)	409, 421
CviQI	GTAC	1 cut(s)	126
DdeI	CTNAG	1 cut(s)	52
DpnI	GATC	2 cut(s)	519, 674
DpnII	GATC	2 cut(s)	517, 672
EaeI	YGGCCR	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	302
Eco57I	CTGAAG	1 cut(s)	67
EcoRI	GAATTC	1 cut(s)	383
FaeI	CATG	2 cut(s)	412, 424
FaqI	GGGAC	1 cut(s)	215
FatI	CATG	2 cut(s)	408, 420
FbaI	TGATCA	1 cut(s)	672
Fnu4HI	GCNGC	2 cut(s)	272, 623
FokI	GGATG	2 cut(s)	221, 294
Fsp4HI	GCNGC	2 cut(s)	272, 623
GluI	GCNGC	2 cut(s)	272, 623
HaeIII	GGCC	2 cut(s)	156, 391
HapII	CCGG	1 cut(s)	75
HgaI	GACGC	1 cut(s)	618
Hin1II	CATG	2 cut(s)	412, 424
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	4 cut(s)	4, 212, 628, 660
HpaII	CCGG	1 cut(s)	75
Hpy166II	GTNNAC	4 cut(s)	138, 305, 446, 547
Hpy188I	TCNGA	2 cut(s)	556, 672
Hpy188III	TCNNGA	3 cut(s)	75, 374, 586
Hpy8I	GTNNAC	4 cut(s)	138, 305, 446, 547
Hpy99I	CGWCG	1 cut(s)	612
HpyAV	CCTTC	5 cut(s)	79, 129, 293, 502, 591
HpyCH4V	TGCA	6 cut(s)	271, 365, 412, 420, 565, 625
HpyF10VI	GCNNNNNNNGC	2 cut(s)	403, 598
HpyF3I	CTNAG	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	412, 424
Kpn2I	TCCGGA	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	672
Kzo9I	GATC	2 cut(s)	517, 672
LmnI	GCTCC	4 cut(s)	120, 286, 403, 424
LpnPI	CCDG	9 cut(s)	88, 136, 182, 208, 359, 444, 527, 599, 709
Lsp1109I	GCAGC	2 cut(s)	283, 609
LweI	GCATC	1 cut(s)	325
MalI	GATC	2 cut(s)	519, 674
MbiI	CCGCTC	1 cut(s)	313
MboI	GATC	2 cut(s)	517, 672
MboII	GAAGA	4 cut(s)	335, 341, 359, 446
MfeI	CAATTG	1 cut(s)	602
MhlI	GDGCHC	3 cut(s)	63, 408, 429
MlsI	TGGCCA	1 cut(s)	156
MluCI	AATT	3 cut(s)	383, 531, 602
MluNI	TGGCCA	1 cut(s)	156
MlyI	GAGTC	2 cut(s)	13, 637
MnlI	CCTC	7 cut(s)	76, 182, 469, 582, 647, 650, 695
Mox20I	TGGCCA	1 cut(s)	156
MroI	TCCGGA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	156
MseI	TTAA	3 cut(s)	165, 291, 399
Msp20I	TGGCCA	1 cut(s)	156
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	1 cut(s)	75
MunI	CAATTG	1 cut(s)	602
MwoI	GCNNNNNNNGC	2 cut(s)	403, 598
NdeII	GATC	2 cut(s)	517, 672
NlaIII	CATG	2 cut(s)	412, 424
NspI	RCATGY	1 cut(s)	412
PfeI	GAWTC	2 cut(s)	212, 660
PkrI	GCNGC	2 cut(s)	273, 624
PleI	GAGTC	2 cut(s)	12, 636
PpsI	GAGTC	2 cut(s)	12, 636
PspPI	GGNCC	2 cut(s)	302, 389
PstI	CTGCAG	2 cut(s)	567, 627
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SaqAI	TTAA	3 cut(s)	165, 291, 399
SatI	GCNGC	2 cut(s)	272, 623
Sau3AI	GATC	2 cut(s)	517, 672
Sau96I	GGNCC	2 cut(s)	302, 389
SchI	GAGTC	2 cut(s)	13, 637
SduI	GDGCHC	3 cut(s)	63, 408, 429
SfaNI	GCATC	1 cut(s)	325
SfcI	CTRYAG	2 cut(s)	563, 623
SinI	GGWCC	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	3 cut(s)	383, 531, 602
SsiI	CCGC	2 cut(s)	206, 311
SspI	AATATT	1 cut(s)	502
TaqII	GACCGA	1 cut(s)	366
TasI	AATT	3 cut(s)	383, 531, 602
TfiI	GAWTC	2 cut(s)	212, 660
Tru1I	TTAA	3 cut(s)	165, 291, 399
Tru9I	TTAA	3 cut(s)	165, 291, 399
TseI	GCWGC	2 cut(s)	271, 622
TspDTI	ATGAA	5 cut(s)	225, 312, 336, 342, 653
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	302
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.