Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr2

Orthogroup ID

OG0007723

Physical Location & Seq

Genomic Coordinates Reverse (-)

20499201 .. 20501960

Gene Structure 2760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom02g22390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGAATCACAGAGGATTAATATATAGCTTTGTTGCAAAAGGAAGTGTTGTTTTAGCAGAACACACGTCCTTCTCCGGAAACTTTAGTACTCTTGCTGTTCAGTGCTTACAGAAGCTACCTTCCAGTAGCAGCAAGTACACCTACTCGTGTGACGGCCACACTTTTAACTTCCTACTTGACAGTGGATTTGTGTTTCTTGTTGTTGCTGATGAATCTGCCGGGAGGACTGTACCGTTTGTGTTCCTTGAACGAGTGAAAGAGGATTTCAAGCATCGGTATGGTCCAGATATTAAGAATGCAGGGCCACATCCTCTTGCAGATGGTGACGAAGACGATGACTTATTTGAAGATCGGTTTAACATTGCATACAATCTTGACAGAGAATTTGGGCCAAGGCTTAAGGAGCACATGCAATATTGCATGGAGCATCCAGAAGAAATAAGTAAGCTTTCCAAACTGAAGGCCCAAATCACGGAGGTCAAAGGTGTGATGATGGACAATATTGAGAAGGTTTTGGATCGTGGGGAGAGAATTGAACTTCTGGTTGATAAAACAGAAAATCTGCAGTTCCAGGCTGACAGCTTCCAGAGGCAAGGCAGGCAATTGCGACGTAAGATGTGGCTGCAGAGTCTCCAAATGAAGCTAATGATTGGAGGTGGAGTCCTTGGATCGGATCGATCATCGTACTATGGCTTATTGCCTGCGGAGGTTTCAAATGTTAAGGTGCTAAGCAACACGGAATCGTCAATTATTAGCCATATGTTGTCCAGTTGGTGTACAAAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006887 GO:0006906 GO:0006996 GO:0007033 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0031410 GO:0031982 GO:0032940 GO:0032991 GO:0033036 GO:0033263 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098796 GO:0099023

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Longin MMtag Synaptobrevin

Protein Analysis

263

Amino Acids

29.74

Weight (kDa)

6.08

Isoelectric Point (pI)

41.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007723)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54300 AT3G54300 AT3G54300
fragaria_vesca	FvH4_7g05140
malus_domestica	MD02G1261900.v1.1 MD07G1058500.v1.1
prunus_persica	Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1 Prupe.2G070100_v2.0.a1
pyrus_communis	pycom02g22390 pycom07g04470
rosa_chinensis	RchiOBHm_Chr1g0331711
rosa_laevigata	RLG00000029720
rosa_multiflora	Rmu_sc0005044.1_g000001 Rmu_sc0034229.1_g000001
rosa_roxburghii	Rroxscaffold_4G00318860
rosa_rugosa	Rorug01G0095900 Rorug01G0095900
rosa_samantha	Rh1AG119500 Rh1BG091100 Rh1CG114600 Rh1DG125000
rosa_wichuraiana	Rw1G009660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	74
AciI	CCGC	1 cut(s)	704
AclWI	GGATC	3 cut(s)	525, 676, 681
AcoI	YGGCCR	1 cut(s)	154
AcsI	RAATTY	1 cut(s)	383
AcuI	CTGAAG	1 cut(s)	479
AfaI	GTAC	5 cut(s)	88, 137, 231, 686, 778
AfiI	CCNNNNNNNGG	2 cut(s)	472, 670
AflII	CTTAAG	1 cut(s)	398
AflIII	ACRYGT	1 cut(s)	63
AgsI	TTSAA	5 cut(s)	248, 268, 347, 536, 714
AjiI	CACGTC	1 cut(s)	66
AjnI	CCWGG	1 cut(s)	570
AluBI	AGCT	5 cut(s)	27, 115, 448, 582, 643
AluI	AGCT	5 cut(s)	27, 115, 448, 582, 643
Alw21I	GWGCWC	1 cut(s)	408
Alw26I	GTCTC	1 cut(s)	635
AlwI	GGATC	3 cut(s)	525, 676, 681
Aor13HI	TCCGGA	1 cut(s)	74
AoxI	GGCC	4 cut(s)	154, 302, 389, 462
ApeKI	GCWGC	2 cut(s)	129, 622
ApoI	RAATTY	1 cut(s)	383
ArsI	GACNNNNNNTTYG	4 cut(s)	170, 202, 368, 400
AseI	ATTAAT	1 cut(s)	17
AspS9I	GGNCC	4 cut(s)	281, 302, 389, 463
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	281
BauI	CACGAG	1 cut(s)	145
BbsI	GAAGAC	1 cut(s)	336
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	2 cut(s)	141, 609
BccI	CCATC	2 cut(s)	314, 487
BceAI	ACGGC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	572
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	1 cut(s)	635
BfmI	CTRYAG	2 cut(s)	563, 623
BfrI	CTTAAG	1 cut(s)	398
BisI	GCNGC	2 cut(s)	130, 623
BlpI	GCTNAGC	1 cut(s)	728
BlsI	GCNGC	2 cut(s)	131, 624
BmcAI	AGTACT	1 cut(s)	88
Bme1390I	CCNGG	2 cut(s)	220, 572
Bme18I	GGWCC	1 cut(s)	281
BmgBI	CACGTC	1 cut(s)	66
BmgT120I	GGNCC	4 cut(s)	281, 302, 389, 463
BmrFI	CCNGG	2 cut(s)	220, 572
BmsI	GCATC	2 cut(s)	280, 436
BpiI	GAAGAC	1 cut(s)	336
Bpu1102I	GCTNAGC	1 cut(s)	728
BpuMI	CCSGG	1 cut(s)	220
Bsa29I	ATCGAT	1 cut(s)	676
BsaJI	CCNNGG	2 cut(s)	392, 664
BsaWI	WCCGGW	1 cut(s)	74
BsaXI	ACNNNNNCTCC	2 cut(s)	645, 675
Bsc4I	CCNNNNNNNGG	2 cut(s)	472, 670
Bse1I	ACTGG	2 cut(s)	123, 768
Bse3DI	GCAATG	1 cut(s)	360
BseAI	TCCGGA	1 cut(s)	74
BseBI	CCWGG	1 cut(s)	572
BseCI	ATCGAT	1 cut(s)	676
BseDI	CCNNGG	2 cut(s)	392, 664
BseGI	GGATG	2 cut(s)	307, 427
BseLI	CCNNNNNNNGG	2 cut(s)	472, 670
BseMI	GCAATG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	123, 768
BseXI	GCAGC	2 cut(s)	141, 609
BshFI	GGCC	4 cut(s)	156, 304, 391, 464
BshVI	ATCGAT	1 cut(s)	676
BsiHKAI	GWGCWC	1 cut(s)	408
BsiSI	CCGG	2 cut(s)	75, 219
BslI	CCNNNNNNNGG	2 cut(s)	472, 670
BsmAI	GTCTC	1 cut(s)	635
BsmI	GAATGC	1 cut(s)	301
BsnI	GGCC	4 cut(s)	156, 304, 391, 464
Bsp1286I	GDGCHC	1 cut(s)	408
Bsp13I	TCCGGA	1 cut(s)	74
Bsp1407I	TGTACA	1 cut(s)	776
Bsp143I	GATC	5 cut(s)	349, 517, 668, 673, 677
Bsp1720I	GCTNAGC	1 cut(s)	728
BspACI	CCGC	1 cut(s)	704
BspANI	GGCC	4 cut(s)	156, 304, 391, 464
BspDI	ATCGAT	1 cut(s)	676
BspEI	TCCGGA	1 cut(s)	74
BspMAI	CTGCAG	2 cut(s)	567, 627
BspPI	GGATC	3 cut(s)	525, 676, 681
BspTI	CTTAAG	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	360
BsrGI	TGTACA	1 cut(s)	776
BsrI	ACTGG	2 cut(s)	123, 768
BssECI	CCNNGG	2 cut(s)	392, 664
BssMI	GATC	5 cut(s)	349, 517, 668, 673, 677
BssSI	CACGAG	1 cut(s)	145
BssT1I	CCWWGG	2 cut(s)	392, 664
Bst2BI	CACGAG	1 cut(s)	145
Bst2UI	CCWGG	1 cut(s)	572
Bst4CI	ACNGT	3 cut(s)	182, 229, 234
BstAFI	CTTAAG	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	776
BstC8I	GCNNGC	2 cut(s)	599, 702
BstDEI	CTNAG	1 cut(s)	728
BstF5I	GGATG	2 cut(s)	307, 427
BstKTI	GATC	5 cut(s)	352, 520, 671, 676, 680
BstMAI	GTCTC	1 cut(s)	635
BstMBI	GATC	5 cut(s)	349, 517, 668, 673, 677
BstMWI	GCNNNNNNNGC	2 cut(s)	403, 598
BstNI	CCWGG	1 cut(s)	572
BstNSI	RCATGY	1 cut(s)	412
BstSCI	CCNGG	2 cut(s)	218, 570
BstSFI	CTRYAG	2 cut(s)	563, 623
BstV1I	GCAGC	2 cut(s)	141, 609
BstV2I	GAAGAC	1 cut(s)	336
Bsu15I	ATCGAT	1 cut(s)	676
BsuRI	GGCC	4 cut(s)	156, 304, 391, 464
BsuTUI	ATCGAT	1 cut(s)	676
BtrI	CACGTC	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	307, 427
BtsIMutI	CAGTG	2 cut(s)	107, 187
Cac8I	GCNNGC	2 cut(s)	599, 702
Cfr13I	GGNCC	4 cut(s)	281, 302, 389, 463
ClaI	ATCGAT	1 cut(s)	676
Csp6I	GTAC	5 cut(s)	87, 136, 230, 685, 777
CviAII	CATG	2 cut(s)	409, 421
CviQI	GTAC	5 cut(s)	87, 136, 230, 685, 777
DdeI	CTNAG	1 cut(s)	728
DpnI	GATC	5 cut(s)	351, 519, 670, 675, 679
DpnII	GATC	5 cut(s)	349, 517, 668, 673, 677
EaeI	YGGCCR	1 cut(s)	154
Eco130I	CCWWGG	2 cut(s)	392, 664
Eco47I	GGWCC	1 cut(s)	281
Eco57I	CTGAAG	1 cut(s)	479
EcoRII	CCWGG	1 cut(s)	570
EcoT14I	CCWWGG	2 cut(s)	392, 664
ErhI	CCWWGG	2 cut(s)	392, 664
FaeI	CATG	2 cut(s)	412, 424
FaiI	YATR	9 cut(s)	22, 24, 279, 367, 410, 422, 690, 759, 761
FatI	CATG	2 cut(s)	408, 420
FauNDI	CATATG	1 cut(s)	759
Fnu4HI	GCNGC	2 cut(s)	130, 623
FokI	GGATG	2 cut(s)	294, 414
Fsp4HI	GCNGC	2 cut(s)	130, 623
GluI	GCNGC	2 cut(s)	130, 623
HaeIII	GGCC	4 cut(s)	156, 304, 391, 464
HapII	CCGG	2 cut(s)	75, 219
Hin1II	CATG	2 cut(s)	412, 424
HindIII	AAGCTT	1 cut(s)	446
HinfI	GANTC	5 cut(s)	4, 212, 628, 660, 740
HpaII	CCGG	2 cut(s)	75, 219
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	2 cut(s)	138, 777
Hpy188I	TCNGA	1 cut(s)	673
Hpy188III	TCNNGA	5 cut(s)	75, 284, 374, 431, 586
Hpy8I	GTNNAC	2 cut(s)	138, 777
Hpy99I	CGWCG	1 cut(s)	612
HpyAV	CCTTC	4 cut(s)	79, 129, 454, 502
HpyCH4III	ACNGT	3 cut(s)	182, 229, 234
HpyCH4IV	ACGT	2 cut(s)	65, 610
HpyCH4V	TGCA	8 cut(s)	35, 299, 317, 365, 412, 420, 565, 625
HpyF10VI	GCNNNNNNNGC	2 cut(s)	403, 598
HpyF3I	CTNAG	1 cut(s)	728
HpySE526I	ACGT	2 cut(s)	65, 610
Hsp92II	CATG	2 cut(s)	412, 424
Kpn2I	TCCGGA	1 cut(s)	74
Kzo9I	GATC	5 cut(s)	349, 517, 668, 673, 677
LmnI	GCTCC	2 cut(s)	403, 424
Lsp1109I	GCAGC	2 cut(s)	141, 609
LweI	GCATC	2 cut(s)	280, 436
MaeII	ACGT	2 cut(s)	65, 610
MaeIII	GTNAC	2 cut(s)	149, 323
MalI	GATC	5 cut(s)	351, 519, 670, 675, 679
MboI	GATC	5 cut(s)	349, 517, 668, 673, 677
MboII	GAAGA	3 cut(s)	341, 359, 446
MfeI	CAATTG	1 cut(s)	602
MhlI	GDGCHC	1 cut(s)	408
MluCI	AATT	4 cut(s)	383, 531, 602, 747
MlyI	GAGTC	2 cut(s)	637, 669
MnlI	CCTC	8 cut(s)	5, 216, 253, 321, 469, 582, 647, 700
MroI	TCCGGA	1 cut(s)	74
MseI	TTAA	6 cut(s)	17, 165, 291, 357, 399, 720
MslI	CAYNNNNRTG	1 cut(s)	276
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	2 cut(s)	75, 219
MspR9I	CCNGG	2 cut(s)	220, 572
MunI	CAATTG	1 cut(s)	602
Mva1269I	GAATGC	1 cut(s)	301
MvaI	CCWGG	1 cut(s)	572
MwoI	GCNNNNNNNGC	2 cut(s)	403, 598
NciI	CCSGG	1 cut(s)	220
NdeI	CATATG	1 cut(s)	759
NdeII	GATC	5 cut(s)	349, 517, 668, 673, 677
NlaIII	CATG	2 cut(s)	412, 424
NmuCI	GTSAC	2 cut(s)	149, 323
NspI	RCATGY	1 cut(s)	412
PctI	GAATGC	1 cut(s)	301
PfeI	GAWTC	3 cut(s)	4, 212, 740
PkrI	GCNGC	2 cut(s)	131, 624
PleI	GAGTC	2 cut(s)	636, 668
PpsI	GAGTC	2 cut(s)	636, 668
PshBI	ATTAAT	1 cut(s)	17
Psp6I	CCWGG	1 cut(s)	570
PspGI	CCWGG	1 cut(s)	570
PspPI	GGNCC	4 cut(s)	281, 302, 389, 463
PstI	CTGCAG	2 cut(s)	567, 627
RsaI	GTAC	5 cut(s)	88, 137, 231, 686, 778
RsaNI	GTAC	5 cut(s)	87, 136, 230, 685, 777
RseI	CAYNNNNRTG	1 cut(s)	276
SaqAI	TTAA	6 cut(s)	17, 165, 291, 357, 399, 720
SatI	GCNGC	2 cut(s)	130, 623
Sau3AI	GATC	5 cut(s)	349, 517, 668, 673, 677
Sau96I	GGNCC	4 cut(s)	281, 302, 389, 463
ScaI	AGTACT	1 cut(s)	88
SchI	GAGTC	2 cut(s)	637, 669
ScrFI	CCNGG	2 cut(s)	220, 572
SduI	GDGCHC	1 cut(s)	408
SfaNI	GCATC	2 cut(s)	280, 436
SfcI	CTRYAG	2 cut(s)	563, 623
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	1 cut(s)	276
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	4 cut(s)	383, 531, 602, 747
SsiI	CCGC	1 cut(s)	704
SspI	AATATT	2 cut(s)	416, 502
StyD4I	CCNGG	2 cut(s)	218, 570
StyI	CCWWGG	2 cut(s)	392, 664
TaaI	ACNGT	3 cut(s)	182, 229, 234
TaiI	ACGT	2 cut(s)	68, 613
TaqI	TCGA	1 cut(s)	676
TasI	AATT	4 cut(s)	383, 531, 602, 747
TatI	WGTACW	3 cut(s)	86, 135, 776
TfiI	GAWTC	3 cut(s)	4, 212, 740
Tru1I	TTAA	6 cut(s)	17, 165, 291, 357, 399, 720
Tru9I	TTAA	6 cut(s)	17, 165, 291, 357, 399, 720
TscAI	CASTG	2 cut(s)	107, 187
TseFI	GTSAC	2 cut(s)	149, 323
TseI	GCWGC	2 cut(s)	129, 622
Tsp45I	GTSAC	2 cut(s)	149, 323
TspDTI	ATGAA	3 cut(s)	17, 225, 653
TspGWI	ACGGA	2 cut(s)	488, 752
TspRI	CASTG	2 cut(s)	107, 187
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	1 cut(s)	281
VspI	ATTAAT	1 cut(s)	17
XapI	RAATTY	1 cut(s)	383
XceI	RCATGY	1 cut(s)	412
ZrmI	AGTACT	1 cut(s)	88

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.